# HG changeset patch
# User rnateam
# Date 1411477893 14400
# Node ID 47a0bcb1188d1a060e2d31950f2842d9a9f88bbc
# Parent  59e321cafca750ba4e5f4bf67777fdcf810ef5d6
Uploaded

diff -r 59e321cafca7 -r 47a0bcb1188d blockclust_workflow_clustering.ga
--- a/blockclust_workflow_clustering.ga	Tue Sep 23 08:33:55 2014 -0400
+++ b/blockclust_workflow_clustering.ga	Tue Sep 23 09:11:33 2014 -0400
@@ -2,7 +2,7 @@
     "a_galaxy_workflow": "true", 
     "annotation": "Until clustering step. No post processing included.", 
     "format-version": "0.1", 
-    "name": "BlockClustWorkflow_clustering", 
+    "name": "imported: BlockClustWorkflow_clustering", 
     "steps": {
         "0": {
             "annotation": "", 
@@ -18,7 +18,7 @@
             "outputs": [], 
             "position": {
                 "left": 217, 
-                "top": 289.5
+                "top": 334.5
             }, 
             "tool_errors": null, 
             "tool_id": null, 
@@ -74,7 +74,7 @@
             ], 
             "position": {
                 "left": 446.5, 
-                "top": 246.5
+                "top": 291.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -144,7 +144,7 @@
             ], 
             "position": {
                 "left": 740, 
-                "top": 278
+                "top": 323
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -179,7 +179,7 @@
             ], 
             "position": {
                 "left": 961.5, 
-                "top": 226.5
+                "top": 271.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionoutput": {
@@ -208,6 +208,10 @@
                 {
                     "description": "runtime parameter for tool BlockClust", 
                     "name": "tool_mode"
+                }, 
+                {
+                    "description": "runtime parameter for tool BlockClust", 
+                    "name": "tool_mode"
                 }
             ], 
             "name": "BlockClust", 
@@ -247,7 +251,7 @@
             ], 
             "position": {
                 "left": 1268.5, 
-                "top": 260.5
+                "top": 305.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -273,7 +277,7 @@
             }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 
-            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
+            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
             "user_outputs": []
diff -r 59e321cafca7 -r 47a0bcb1188d blockclust_workflow_complete.ga
--- a/blockclust_workflow_complete.ga	Tue Sep 23 08:33:55 2014 -0400
+++ b/blockclust_workflow_complete.ga	Tue Sep 23 09:11:33 2014 -0400
@@ -2,7 +2,7 @@
     "a_galaxy_workflow": "true", 
     "annotation": "", 
     "format-version": "0.1", 
-    "name": "BlockClustWorkflow_complete", 
+    "name": "imported: BlockClustWorkflow_complete", 
     "steps": {
         "0": {
             "annotation": "", 
@@ -18,7 +18,7 @@
             "outputs": [], 
             "position": {
                 "left": 240, 
-                "top": 315.5
+                "top": 349.5
             }, 
             "tool_errors": null, 
             "tool_id": null, 
@@ -74,7 +74,7 @@
             ], 
             "position": {
                 "left": 469.5, 
-                "top": 272.5
+                "top": 306.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -144,7 +144,7 @@
             ], 
             "position": {
                 "left": 763, 
-                "top": 304
+                "top": 338
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -179,7 +179,7 @@
             ], 
             "position": {
                 "left": 984.5, 
-                "top": 252.5
+                "top": 286.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionoutput": {
@@ -208,6 +208,10 @@
                 {
                     "description": "runtime parameter for tool BlockClust", 
                     "name": "tool_mode"
+                }, 
+                {
+                    "description": "runtime parameter for tool BlockClust", 
+                    "name": "tool_mode"
                 }
             ], 
             "name": "BlockClust", 
@@ -247,7 +251,7 @@
             ], 
             "position": {
                 "left": 1287.5, 
-                "top": 294.5
+                "top": 328.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -273,7 +277,7 @@
             }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 
-            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
+            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
             "user_outputs": []
@@ -297,7 +301,7 @@
             ], 
             "position": {
                 "left": 1588, 
-                "top": 232
+                "top": 266
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -341,7 +345,7 @@
             ], 
             "position": {
                 "left": 1880, 
-                "top": 295.5
+                "top": 329.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionmultiple_alignment_output": {
@@ -417,7 +421,7 @@
             ], 
             "position": {
                 "left": 2184.5, 
-                "top": 338.5
+                "top": 372.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionclusters": {