# HG changeset patch
# User rnateam
# Date 1411475635 14400
# Node ID 59e321cafca750ba4e5f4bf67777fdcf810ef5d6
# Parent  a1c8462330942d467ce4262cb58e237fe354aec2
Uploaded

diff -r a1c846233094 -r 59e321cafca7 blockclust_workflow_clustering.ga
--- a/blockclust_workflow_clustering.ga	Wed Jul 09 07:49:36 2014 -0400
+++ b/blockclust_workflow_clustering.ga	Tue Sep 23 08:33:55 2014 -0400
@@ -18,7 +18,7 @@
             "outputs": [], 
             "position": {
                 "left": 217, 
-                "top": 282.5
+                "top": 289.5
             }, 
             "tool_errors": null, 
             "tool_id": null, 
@@ -74,7 +74,7 @@
             ], 
             "position": {
                 "left": 446.5, 
-                "top": 239.5
+                "top": 246.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -144,7 +144,7 @@
             ], 
             "position": {
                 "left": 740, 
-                "top": 271
+                "top": 278
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -179,7 +179,7 @@
             ], 
             "position": {
                 "left": 961.5, 
-                "top": 219.5
+                "top": 226.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionoutput": {
@@ -246,8 +246,8 @@
                 }
             ], 
             "position": {
-                "left": 1220.5, 
-                "top": 375.5
+                "left": 1268.5, 
+                "top": 260.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -273,7 +273,7 @@
             }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 
-            "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
+            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
             "user_outputs": []
diff -r a1c846233094 -r 59e321cafca7 blockclust_workflow_complete.ga
--- a/blockclust_workflow_complete.ga	Wed Jul 09 07:49:36 2014 -0400
+++ b/blockclust_workflow_complete.ga	Tue Sep 23 08:33:55 2014 -0400
@@ -17,8 +17,8 @@
             "name": "Input dataset", 
             "outputs": [], 
             "position": {
-                "left": 217, 
-                "top": 276.5
+                "left": 240, 
+                "top": 315.5
             }, 
             "tool_errors": null, 
             "tool_id": null, 
@@ -73,8 +73,8 @@
                 }
             ], 
             "position": {
-                "left": 446.5, 
-                "top": 233.5
+                "left": 469.5, 
+                "top": 272.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -143,8 +143,8 @@
                 }
             ], 
             "position": {
-                "left": 740, 
-                "top": 265
+                "left": 763, 
+                "top": 304
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -178,8 +178,8 @@
                 }
             ], 
             "position": {
-                "left": 961.5, 
-                "top": 213.5
+                "left": 984.5, 
+                "top": 252.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionoutput": {
@@ -246,8 +246,8 @@
                 }
             ], 
             "position": {
-                "left": 1220.5, 
-                "top": 369.5
+                "left": 1287.5, 
+                "top": 294.5
             }, 
             "post_job_actions": {
                 "HideDatasetActioncluster_dist": {
@@ -273,7 +273,7 @@
             }, 
             "tool_errors": null, 
             "tool_id": "toolshed.g2.bx.psu.edu/repos/rnateam/blockclust/blockclust/1.0.0", 
-            "tool_state": "{\"tool_mode\": \"{\\\"pred\\\": {\\\"pred_mode\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"operation\\\": \\\"clust\\\", \\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"__current_case__\\\": 1, \\\"input_bbo\\\": null}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
+            "tool_state": "{\"tool_mode\": \"{\\\"reference\\\": {\\\"__class__\\\": \\\"RuntimeValue\\\"}, \\\"input_bbo\\\": null, \\\"pred\\\": {\\\"pred_mode\\\": \\\"model_based\\\", \\\"enable_pred\\\": \\\"yes\\\", \\\"__current_case__\\\": 0}, \\\"nochr\\\": \\\"False\\\", \\\"__current_case__\\\": 1, \\\"operation\\\": \\\"clust\\\"}\", \"__rerun_remap_job_id__\": null, \"__page__\": 0}", 
             "tool_version": "1.0.0", 
             "type": "tool", 
             "user_outputs": []
@@ -296,8 +296,8 @@
                 }
             ], 
             "position": {
-                "left": 1562, 
-                "top": 204
+                "left": 1588, 
+                "top": 232
             }, 
             "post_job_actions": {
                 "HideDatasetActionout_file1": {
@@ -340,8 +340,8 @@
                 }
             ], 
             "position": {
-                "left": 1857, 
-                "top": 256.5
+                "left": 1880, 
+                "top": 295.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionmultiple_alignment_output": {
@@ -368,7 +368,7 @@
             "input_connections": {
                 "tool_mode|clusters_bed": {
                     "id": 4, 
-                    "output_name": "clusters"
+                    "output_name": "model_based_pred_bed"
                 }, 
                 "tool_mode|cmsearch_out": {
                     "id": 6, 
@@ -416,8 +416,8 @@
                 }
             ], 
             "position": {
-                "left": 2165.5, 
-                "top": 313.5
+                "left": 2184.5, 
+                "top": 338.5
             }, 
             "post_job_actions": {
                 "HideDatasetActionclusters": {
@@ -459,4 +459,4 @@
             "user_outputs": []
         }
     }
-}
+}
\ No newline at end of file
diff -r a1c846233094 -r 59e321cafca7 repository_dependencies.xml
--- a/repository_dependencies.xml	Wed Jul 09 07:49:36 2014 -0400
+++ b/repository_dependencies.xml	Tue Sep 23 08:33:55 2014 -0400
@@ -1,8 +1,8 @@
 <?xml version="1.0"?>
 <repositories description="This workflow requires a number of different repositories.">
-    <repository changeset_revision="27dde42069e0" name="blockclust" owner="rnateam" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="57f66041cc0f" name="blockclust" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
     <!--<repository name="segemehl" owner="rnateam" />-->
-    <repository changeset_revision="6ae946589f04" name="blockbuster" owner="rnateam" toolshed="http://toolshed.g2.bx.psu.edu" />
-    <repository changeset_revision="55bb96edfc07" name="infernal" owner="bgruening" toolshed="http://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="6ae946589f04" name="blockbuster" owner="rnateam" toolshed="https://toolshed.g2.bx.psu.edu" />
+    <repository changeset_revision="55bb96edfc07" name="infernal" owner="bgruening" toolshed="https://toolshed.g2.bx.psu.edu" />
     <!--<repository name="graphclust" owner="rnateam" />-->
 </repositories>