Mercurial > repos > rnateam > chipseeker

annotate test-data/cached_locally/ref.gtf @ 6:b418a1d3585d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit d83142dbe2432fcb0f56dcd6311a05c061628ecc
author rnateam
date Wed, 13 Mar 2019 03:05:16 -0400
parents 95f779f4adb7
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
1 18 pseudogene gene 111568 112005 . + . gene_id "ENSG00000263006"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
2 18 processed_transcript transcript 111568 112005 . + . gene_id "ENSG00000263006"; transcript_id "ENST00000608049"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "ROCK1P1-003"; transcript_source "havana";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
3 18 protein_coding gene 346465 347342 . - . gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
4 18 protein_coding gene 371111 372102 . - . gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
5 18 protein_coding gene 394601 396513 . - . gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
6 18 protein_coding gene 399015 400382 . - . gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
7 18 protein_coding transcript 346465 347342 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
8 18 protein_coding transcript 371111 372102 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
9 18 protein_coding transcript 394601 396513 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
10 18 protein_coding transcript 399015 400382 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
11 18 protein_coding exon 346465 347341 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; exon_id "ENSE00003544566";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
12 18 protein_coding CDS 346465 347341 . - 2 gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; protein_id "ENSP00000383115";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
13 18 retained_intron transcript 346465 347342 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
14 18 retained_intron transcript 371111 372102 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
15 18 retained_intron transcript 394601 396513 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
16 18 retained_intron transcript 399015 400382 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
95f779f4adb7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 3419a5a5e19a93369c8c20a39babe5636a309292
rnateam
parents:
diff changeset
17 18 retained_intron exon 346465 347341 . - . gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana"; exon_id "ENSE00003660294";