comparison chipseeker.xml @ 4:90fe78a19b55 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/chipseeker commit 6f594126ac7369cc80c30a02a6df57e785dfb45a

3:535321abf9a4

<tool id="chipseeker" name="ChIPseeker" version="1.14.2.2">
    <description>for ChIP peak annotation and visualization</description>
    <requirements>
        <requirement type="package" version="1.14.2">bioconductor-chipseeker</requirement>
        <requirement type="package" version="1.4.4">r-optparse</requirement>
    </requirements>
    <version_command><![CDATA[
echo $(R --version | grep version | grep -v GNU)", ChIPseeker version" $(R --vanilla --slave -e "library(ChIPseeker); cat(sessionInfo()\$otherPkgs\$ChIPseeker\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
    ]]></version_command>

4:90fe78a19b55

<tool id="chipseeker" name="ChIPseeker" version="1.16.1">
    <description>for ChIP peak annotation and visualization</description>
    <requirements>
        <requirement type="package" version="1.16.1">bioconductor-chipseeker</requirement>
        <requirement type="package" version="1.4.4">r-optparse</requirement>
    </requirements>
    <version_command><![CDATA[
echo $(R --version | grep version | grep -v GNU)", ChIPseeker version" $(R --vanilla --slave -e "library(ChIPseeker); cat(sessionInfo()\$otherPkgs\$ChIPseeker\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")
    ]]></version_command>