Mercurial > repos > rnateam > chipseeker

view test-data/cached_locally/ref.gtf @ 7:1b9a9409831d draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/chipseeker commit e07ee851144e07fde91877727d6a39a1906f7639
author rnateam
date Sat, 27 Apr 2019 11:04:35 -0400
parents 95f779f4adb7
children
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18	pseudogene	gene	111568	112005	.	+	.	gene_id "ENSG00000263006"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene";
18	processed_transcript	transcript	111568	112005	.	+	.	gene_id "ENSG00000263006"; transcript_id "ENST00000608049"; gene_name "ROCK1P1"; gene_source "havana"; gene_biotype "pseudogene"; transcript_name "ROCK1P1-003"; transcript_source "havana";
18	protein_coding	gene	346465	347342	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
18	protein_coding	gene	371111	372102	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
18	protein_coding	gene	394601	396513	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
18	protein_coding	gene	399015	400382	.	-	.	gene_id "ENSG00000158270"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding";
18	protein_coding	transcript	346465	347342	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
18	protein_coding	transcript	371111	372102	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
18	protein_coding	transcript	394601	396513	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
18	protein_coding	transcript	399015	400382	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782";
18	protein_coding	exon	346465	347341	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; exon_id "ENSE00003544566";
18	protein_coding	CDS	346465	347341	.	-	2	gene_id "ENSG00000158270"; transcript_id "ENST00000400256"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-001"; transcript_source "ensembl_havana"; tag "CCDS"; ccds_id "CCDS32782"; protein_id "ENSP00000383115";
18	retained_intron	transcript	346465	347342	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
18	retained_intron	transcript	371111	372102	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
18	retained_intron	transcript	394601	396513	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
18	retained_intron	transcript	399015	400382	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana";
18	retained_intron	exon	346465	347341	.	-	.	gene_id "ENSG00000158270"; transcript_id "ENST00000582147"; exon_number "5"; gene_name "COLEC12"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "COLEC12-002"; transcript_source "havana"; exon_id "ENSE00003660294";