# HG changeset patch # User rnateam # Date 1508488303 14400 # Node ID fccb17c9e7efa6752cce914f02cbf649121a063d planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv commit 3bc676ca60e837f8aca261d0b7860128b3474a5c diff -r 000000000000 -r fccb17c9e7ef cmcv.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/cmcv.xml Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,56 @@ + + visualization of comparisons between RNA family models (CM) + + macros.xml + + + + + + + + + +
+ +
+ + + + + + + + + + + + + + + + + + + + diff -r 000000000000 -r fccb17c9e7ef macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,86 @@ + + 1.0.6 + + + + cmv + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + common['output_format'] == 'pdf' + + + + common['output_format'] == 'svg' + + + + common['output_format'] == 'png' + + + + common['output_format'] == 'ps' + + + + + -d $common.model_details + -e $common.emission_layout + -n $common.n + -w $common.w + -c $common.c + -t $common.t + -f $common.output_format + #if $common.alignment_filepath + -s $common.alignment_filepath + #end if + + + + + 10.1093/nar/gkt329 + + + + diff -r 000000000000 -r fccb17c9e7ef tRNA.pdf Binary file tRNA.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_1.pdf Binary file test-data/Hammerhead_1.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_3.pdf Binary file test-data/Hammerhead_3.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_HH10.pdf Binary file test-data/Hammerhead_HH10.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_HH9.cm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/Hammerhead_HH9.cm Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,598 @@ +INFERNAL1/a [1.1 | October 2013] +NAME Hammerhead_HH9 +ACC RF02275 +STATES 240 +NODES 65 +CLEN 77 +W 103 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Fri Feb 28 01:30:52 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 33 +EFFN 1.567017 +CKSUM 796486396 +NULL 0.000 0.000 0.000 0.000 +GA 52.00 +TC 52.40 +NC 51.90 +EFP7GF -8.3103 0.71890 +ECMLC 0.69960 -5.09380 2.60784 1600000 262533 0.004571 +ECMGC 0.43156 -15.39797 -3.48915 1600000 68246 0.005861 +ECMLI 0.73853 -2.62455 4.04692 1600000 165569 0.007248 +ECMGI 0.51255 -9.59123 -0.17571 1600000 49879 0.008019 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 103 135 -6.791 -6.998 -0.308 -2.513 + IL 1 1 2 1 4 4 30 105 138 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 3 30 105 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 1 ] 1 - u - - - + ML 3 2 3 5 3 3 29 103 136 -7.602 -0.027 -6.257 -0.234 -0.123 -0.914 0.766 + D 4 2 3 5 3 1 26 101 134 -7.290 -2.048 -0.412 + IL 5 5 3 5 3 3 29 104 137 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 2 ] 2 - u - - - + ML 6 5 3 8 3 2 28 102 135 -7.645 -0.026 -6.299 -0.229 -0.080 -0.850 0.719 + D 7 5 3 8 3 1 25 100 133 -7.141 -0.628 -1.532 + IL 8 8 3 8 3 2 28 103 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 3 ] 3 - g - - - + ML 9 8 3 11 3 1 27 101 134 -8.220 -0.291 -2.481 0.177 -0.839 0.571 -0.278 + D 10 8 3 11 3 0 24 99 132 -5.620 -0.734 -1.403 + IL 11 11 3 11 3 2 28 101 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 4 ] - 84 - u - - + MR 12 11 3 14 3 3 29 100 133 -7.954 -0.025 -6.271 0.090 -0.349 -0.887 0.687 + D 13 11 3 14 3 0 22 97 130 -7.578 -2.756 -0.240 + IR 14 14 3 14 3 2 28 100 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 5 ] - 83 - a - - + MR 15 14 3 17 3 2 28 99 132 -7.954 -0.025 -6.271 0.182 -0.063 -0.261 0.103 + D 16 14 3 17 3 0 22 97 130 -7.578 -1.489 -0.647 + IR 17 17 3 17 3 2 27 99 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 6 ] - 82 - a - - + MR 18 17 3 20 3 2 28 98 131 -8.058 -0.023 -6.376 0.400 -0.418 -0.083 -0.018 + D 19 17 3 20 3 0 21 95 128 -7.241 -2.419 -0.310 + IR 20 20 3 20 3 2 27 98 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 7 ] - 81 - u - - + MR 21 20 3 23 3 2 27 97 130 -8.058 -0.023 -6.376 0.287 -0.181 -0.578 0.297 + D 22 20 3 23 3 0 21 94 127 -7.241 -2.419 -0.310 + IR 23 23 3 23 3 2 26 97 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 8 ] - 80 - a - - + MR 24 23 3 26 3 2 27 96 129 -8.058 -0.023 -6.376 0.651 -0.505 -0.299 -0.132 + D 25 23 3 26 3 0 20 93 126 -7.241 -2.419 -0.310 + IR 26 26 3 26 3 1 26 96 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 9 ] - 79 - g - - + MR 27 26 3 29 3 2 26 95 128 -8.058 -0.023 -6.376 0.106 -0.685 0.234 0.170 + D 28 26 3 29 3 0 20 93 125 -7.241 -2.419 -0.310 + IR 29 29 3 29 3 1 25 95 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 10 ] - 78 - a - - + MR 30 29 3 32 3 2 25 94 127 -8.058 -0.023 -6.376 0.761 -0.594 -0.542 -0.065 + D 31 29 3 32 3 0 20 92 125 -7.241 -2.419 -0.310 + IR 32 32 3 32 3 1 24 94 127 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 11 ] - 77 - a - - + MR 33 32 3 35 3 1 25 93 126 -8.058 -0.023 -6.376 0.768 -1.014 0.040 -0.369 + D 34 32 3 35 3 0 19 92 124 -7.241 -0.661 -1.471 + IR 35 35 3 35 3 1 23 93 126 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 12 ] - 76 - u - - + MR 36 35 3 38 5 1 24 92 125 -6.968 -0.043 -6.783 -6.995 -7.887 -0.230 -0.756 -0.646 0.938 + D 37 35 3 38 5 0 17 90 123 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 38 38 3 38 5 1 21 92 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 13 ] 4 75 g c - - + MP 39 38 3 43 6 2 25 91 124 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -2.590 -2.180 -1.964 1.850 -2.759 -3.476 1.187 -2.998 -2.797 2.192 -3.287 0.312 0.916 -2.754 -0.463 -1.764 + ML 40 38 3 43 6 1 19 89 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 41 38 3 43 6 1 19 89 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 42 38 3 43 6 0 15 86 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 43 43 5 43 6 1 21 90 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 44 44 6 44 5 1 21 90 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 14 ] 5 74 G C - - + MP 45 44 6 49 6 2 24 89 122 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.253 -2.836 -4.324 0.557 -4.803 -4.534 -0.228 -4.617 -4.028 3.497 -4.405 -0.223 -0.550 -4.133 -2.239 -3.215 + ML 46 44 6 49 6 1 19 87 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 47 44 6 49 6 1 18 87 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 48 44 6 49 6 0 15 84 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 49 49 5 49 6 1 20 88 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 50 50 6 50 5 1 20 88 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 15 ] 6 73 C G - - + MP 51 50 6 55 6 2 23 87 120 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 52 50 6 55 6 1 18 85 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 53 50 6 55 6 1 18 85 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 54 50 6 55 6 0 14 82 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 55 55 5 55 6 1 20 86 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 56 56 6 56 5 1 20 86 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 7 72 C G - - + MP 57 56 6 61 6 2 21 85 118 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.856 -3.773 -2.271 -0.203 -3.042 -4.470 3.435 -3.702 -3.874 0.101 -4.273 -1.830 0.571 -4.056 -0.830 -2.814 + ML 58 56 6 61 6 1 18 84 116 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 59 56 6 61 6 1 16 83 116 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 60 56 6 61 6 0 14 81 114 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 61 61 5 61 6 1 19 84 117 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 62 62 6 62 5 1 19 84 117 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 8 71 g u - - + MP 63 62 6 67 4 2 19 83 116 -4.765 -6.998 -0.102 -5.412 -2.697 -1.788 -2.960 1.337 -3.159 -3.556 0.836 -3.099 -2.727 1.766 -1.214 2.166 0.520 -3.064 -0.980 -1.882 + ML 64 62 6 67 4 1 17 82 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 65 62 6 67 4 1 15 82 114 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 66 62 6 67 4 0 14 80 113 -4.568 -4.250 -2.265 -0.520 + IL 67 67 5 67 4 1 18 83 116 -1.835 -2.518 -0.960 -5.004 0.000 0.000 0.000 0.000 + IR 68 68 6 68 3 1 18 83 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 18 ] 10 - U - - - + ML 69 68 6 71 3 1 18 81 114 -7.819 -0.023 -6.474 -1.223 -1.267 -1.942 1.534 + D 70 68 6 71 3 0 13 79 112 -6.174 -1.687 -0.566 + IL 71 71 3 71 3 1 17 82 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 11 - U - - - + ML 72 71 3 74 3 1 17 80 113 -7.819 -0.023 -6.474 -1.223 -1.267 -1.942 1.534 + D 73 71 3 74 3 0 13 78 111 -6.174 -1.687 -0.566 + IL 74 74 3 74 3 1 16 81 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 20 ] 12 - A - - - + ML 75 74 3 77 3 1 17 79 112 -7.819 -0.023 -6.474 1.503 -1.738 -1.177 -1.240 + D 76 74 3 77 3 0 12 77 110 -6.174 -1.687 -0.566 + IL 77 77 3 77 3 1 16 80 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 21 ] 13 - C - - - + ML 78 77 3 80 3 1 16 78 111 -8.220 -0.021 -6.537 -1.396 1.516 -2.205 -0.881 + D 79 77 3 80 3 0 11 76 109 -5.620 -0.734 -1.403 + IL 80 80 3 80 3 1 15 78 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 22 ] - 70 - C - - + MR 81 80 3 83 3 1 16 77 110 -8.220 -0.021 -6.537 -0.799 1.038 -1.595 0.058 + D 82 80 3 83 3 0 10 75 108 -6.390 -1.568 -0.620 + IR 83 83 3 83 3 1 14 77 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 23 ] - 69 - A - - + MR 84 83 3 86 3 1 15 76 109 -8.220 -0.021 -6.537 1.648 -2.082 -1.743 -1.597 + D 85 83 3 86 3 0 9 74 107 -6.390 -1.568 -0.620 + IR 86 86 3 86 3 1 14 76 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 24 ] - 68 - U - - + MR 87 86 3 89 5 1 15 75 108 -6.968 -0.043 -6.783 -6.995 -7.887 -1.223 -1.267 -1.942 1.534 + D 88 86 3 89 5 0 8 73 106 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 89 89 3 89 5 1 12 75 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 25 ] 14 67 C G - - + MP 90 89 3 94 6 2 16 74 107 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 91 89 3 94 6 1 10 72 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 92 89 3 94 6 1 10 72 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 93 89 3 94 6 0 6 69 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 94 94 5 94 6 1 11 73 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 95 95 6 95 5 1 12 73 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 26 ] 15 66 U A - - + MP 96 95 6 100 6 2 15 72 105 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.898 -3.712 -3.767 -0.030 -2.775 -4.358 1.546 -3.449 -3.776 0.273 -4.163 -1.620 3.167 -4.059 -0.458 -2.627 + ML 97 95 6 100 6 1 10 70 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 98 95 6 100 6 1 10 70 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 99 95 6 100 6 0 6 67 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 100 100 5 100 6 1 11 71 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 101 101 6 101 5 1 11 71 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 27 ] 16 65 G C - - + MP 102 101 6 106 6 2 15 70 103 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.732 -2.590 -3.763 1.442 -4.162 -4.378 0.313 -4.046 -3.690 3.177 -4.112 -0.237 -0.013 -3.778 -1.669 -2.665 + ML 103 101 6 106 6 1 9 68 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 104 101 6 106 6 1 9 68 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 105 101 6 106 6 0 6 65 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 106 106 5 106 6 1 11 69 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 107 107 6 107 5 1 11 69 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 28 ] 17 64 C G - - + MP 108 107 6 112 6 2 14 68 101 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 109 107 6 112 6 1 9 66 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 110 107 6 112 6 1 8 66 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 111 107 6 112 6 0 5 63 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 112 112 5 112 6 1 10 67 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 113 113 6 113 5 1 10 67 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 18 63 A U - - + MP 114 113 6 118 6 2 12 66 99 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.821 -4.865 0.465 -3.651 -3.498 1.328 -4.034 -0.171 0.046 -4.090 -1.478 -2.444 + ML 115 113 6 118 6 1 8 65 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 116 113 6 118 6 1 7 64 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 117 113 6 118 6 0 5 62 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 118 118 5 118 6 1 9 65 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 119 119 6 119 5 1 9 65 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 19 62 G C - - + MP 120 119 6 124 4 2 10 64 97 -6.791 -6.998 -0.059 -5.412 -4.462 -2.962 -4.540 0.383 -4.839 -4.581 -0.272 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 + ML 121 119 6 124 4 1 8 63 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 122 119 6 124 4 1 6 63 95 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 123 119 6 124 4 0 5 61 94 -4.568 -4.250 -2.265 -0.520 + IL 124 124 5 124 4 1 9 64 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 125 125 6 125 3 1 9 64 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 31 ] 20 - C - - - + ML 126 125 6 128 3 1 9 62 95 -7.819 -0.023 -6.474 -1.396 1.516 -2.205 -0.881 + D 127 125 6 128 3 0 4 60 93 -6.174 -1.687 -0.566 + IL 128 128 3 128 3 1 8 63 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 32 ] 21 - U - - - + ML 129 128 3 131 3 1 8 61 94 -7.819 -0.023 -6.474 -1.223 -1.267 -1.942 1.534 + D 130 128 3 131 3 0 4 59 92 -6.174 -1.687 -0.566 + IL 131 131 3 131 3 1 7 62 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 33 ] 22 - G - - - + ML 132 131 3 134 3 1 7 60 93 -7.819 -0.023 -6.474 -1.271 -2.440 1.641 -1.825 + D 133 131 3 134 3 0 4 58 91 -6.174 -1.687 -0.566 + IL 134 134 3 134 3 1 7 61 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 34 ] 23 - A - - - + ML 135 134 3 137 3 1 6 59 92 -7.819 -0.023 -6.474 1.648 -2.082 -1.743 -1.597 + D 136 134 3 137 3 0 3 57 90 -6.174 -1.687 -0.566 + IL 137 137 3 137 3 1 6 60 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 35 ] 24 - U - - - + ML 138 137 3 140 3 1 5 58 91 -7.819 -0.023 -6.474 -1.223 -1.267 -1.942 1.534 + D 139 137 3 140 3 0 3 56 89 -6.174 -1.687 -0.566 + IL 140 140 3 140 3 1 5 59 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 25 - G - - - + ML 141 140 3 143 3 1 5 57 90 -7.819 -0.023 -6.474 -1.271 -2.440 1.641 -1.825 + D 142 140 3 143 3 0 2 55 88 -6.174 -1.687 -0.566 + IL 143 143 3 143 3 1 5 58 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 26 - A - - - + ML 144 143 3 146 3 1 4 56 89 -8.220 -0.021 -6.537 1.648 -2.082 -1.743 -1.597 + D 145 143 3 146 3 0 2 55 87 -5.620 -0.734 -1.403 + IL 146 146 3 146 3 1 4 56 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 38 ] - 61 - C - - + MR 147 146 3 149 2 1 3 55 88 -8.181 -0.005 -1.396 1.516 -2.205 -0.881 + D 148 146 3 149 2 0 2 54 87 -4.432 -0.068 + IR 149 149 3 149 2 1 3 55 88 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ BIF 39 ] - - - - - - + B 150 149 3 151 195 0 2 54 87 + [ BEGL 40 ] - - - - - - + S 151 150 1 152 4 0 0 28 47 -0.047 -6.756 -6.164 -6.804 + [ MATP 41 ] 27 40 G C - - + MP 152 151 1 156 6 2 2 28 47 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.462 -2.962 -4.540 0.383 -4.839 -4.581 -0.272 -4.759 -4.139 3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 + ML 153 151 1 156 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 154 151 1 156 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 155 151 1 156 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 156 156 5 156 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 157 157 6 157 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 42 ] 28 39 C G - - + MP 158 157 6 162 6 2 2 26 45 -9.050 -8.989 -0.028 -6.843 -8.045 -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 159 157 6 162 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 160 157 6 162 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 161 157 6 162 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 162 162 5 162 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 163 163 6 163 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 43 ] 29 38 U A - - + MP 164 163 6 168 6 2 2 24 43 -9.044 -8.983 -0.022 -7.760 -8.039 -8.434 -3.869 -3.681 -3.741 -0.001 -2.756 -4.334 1.564 -3.428 -3.750 0.307 -4.139 -1.590 3.149 -4.031 -0.440 -2.604 + ML 165 163 6 168 6 1 1 23 42 -6.324 -6.670 -1.208 -1.079 -6.520 -4.049 0.267 -0.365 -0.305 0.276 + MR 166 163 6 168 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 167 163 6 168 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 168 168 5 168 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 169 169 6 169 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 44 ] 30 37 C G - - + MP 170 169 6 174 4 2 2 22 41 -6.791 -6.998 -0.059 -5.412 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 171 169 6 174 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 172 169 6 174 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 173 169 6 174 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 + IL 174 174 5 174 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 175 175 6 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 45 ] 31 - C - - - + ML 176 175 6 178 3 1 1 19 38 -7.819 -0.023 -6.474 -1.396 1.516 -2.205 -0.881 + D 177 175 6 178 3 0 0 18 37 -6.174 -1.687 -0.566 + IL 178 178 3 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 46 ] 32 - A - - - + ML 179 178 3 181 3 1 1 18 36 -7.819 -0.023 -6.474 1.648 -2.082 -1.743 -1.597 + D 180 178 3 181 3 0 0 17 36 -6.174 -1.687 -0.566 + IL 181 181 3 181 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 47 ] 33 - A - - - + ML 182 181 3 184 3 1 1 16 35 -7.819 -0.023 -6.474 1.648 -2.082 -1.743 -1.597 + D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 48 ] 34 - a - - - + ML 185 184 3 187 3 1 1 15 33 -7.819 -0.023 -6.474 0.962 -0.927 -0.359 -0.424 + D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 49 ] 35 - A - - - + ML 188 187 3 190 3 1 1 13 32 -7.819 -0.023 -6.474 1.648 -2.082 -1.743 -1.597 + D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 50 ] 36 - A - - - + ML 191 190 3 193 2 1 1 1 1 * 0.000 1.648 -2.082 -1.743 -1.597 + D 192 190 3 193 2 0 0 0 0 * 0.000 + IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 51 ] - - - - - - + E 194 193 3 -1 0 0 0 0 0 + [ BEGR 52 ] - - - - - - + S 195 150 1 196 3 0 0 40 73 -7.819 -0.023 -6.474 + IL 196 196 2 196 3 1 1 42 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 41 - G - - - + ML 197 196 2 199 3 1 1 40 73 -7.819 -0.023 -6.474 -1.271 -2.440 1.641 -1.825 + D 198 196 2 199 3 0 0 38 71 -6.174 -1.687 -0.566 + IL 199 199 3 199 3 1 1 41 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 42 - A - - - + ML 200 199 3 202 3 1 1 39 72 -7.819 -0.023 -6.474 1.648 -2.082 -1.743 -1.597 + D 201 199 3 202 3 0 0 37 70 -6.174 -1.687 -0.566 + IL 202 202 3 202 3 1 1 40 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 55 ] 43 - A - - - + ML 203 202 3 205 5 1 1 38 71 -6.968 -0.043 -6.783 -6.995 -7.887 1.648 -2.082 -1.743 -1.597 + D 204 202 3 205 5 0 0 36 69 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 205 205 3 205 5 1 1 38 71 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 56 ] 44 60 A U - - + MP 206 205 3 210 6 2 2 37 70 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -3.561 -2.654 -3.595 3.158 -3.821 -4.865 0.465 -3.651 -3.498 1.328 -4.034 -0.171 0.046 -4.090 -1.478 -2.444 + ML 207 205 3 210 6 1 1 35 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 208 205 3 210 6 1 1 35 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 209 205 3 210 6 0 0 32 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 210 210 5 210 6 1 1 36 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 211 211 6 211 5 1 1 36 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 57 ] 45 59 C G - - + MP 212 211 6 216 6 2 2 35 68 -9.050 -8.989 -0.022 -7.765 -8.045 -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 213 211 6 216 6 1 1 33 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 214 211 6 216 6 1 1 33 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 215 211 6 216 6 0 0 30 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 216 216 5 216 6 1 1 34 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 217 217 6 217 5 1 1 34 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 58 ] 46 58 C G - - + MP 218 217 6 222 4 2 2 33 66 -3.294 -6.998 -0.206 -5.412 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447 3.451 -3.563 -4.039 -0.114 -4.329 -2.083 0.758 -4.348 -0.484 -2.889 + ML 219 217 6 222 4 1 1 31 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 220 217 6 222 4 1 1 30 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 221 217 6 222 4 0 0 29 62 -4.568 -4.250 -2.265 -0.520 + IL 222 222 5 222 4 1 1 35 68 -0.807 -3.667 -2.415 -2.623 0.000 0.000 0.000 0.000 + IR 223 223 6 223 3 1 1 23 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 59 ] 51 - u - - - + ML 224 223 6 226 3 1 1 18 38 -7.690 -0.025 -6.344 0.203 -0.679 -0.354 0.528 + D 225 223 6 226 3 0 0 21 42 -1.234 -2.466 -1.344 + IL 226 226 3 226 3 1 1 22 43 -1.311 -0.849 -4.585 0.000 0.000 0.000 0.000 + [ MATL 60 ] 54 - a - - - + ML 227 226 3 229 3 1 1 16 35 -7.819 -0.023 -6.474 0.772 -1.070 0.068 -0.383 + D 228 226 3 229 3 0 0 16 34 -6.174 -1.687 -0.566 + IL 229 229 3 229 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 61 ] 55 - u - - - + ML 230 229 3 232 3 1 1 15 33 -7.819 -0.023 -6.474 0.149 -0.323 -0.997 0.669 + D 231 229 3 232 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 232 232 3 232 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 62 ] 56 - u - - - + ML 233 232 3 235 3 1 1 13 32 -7.819 -0.023 -6.474 -0.263 -0.478 -1.036 0.972 + D 234 232 3 235 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 235 235 3 235 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 63 ] 57 - A - - - + ML 236 235 3 238 2 1 1 1 1 * 0.000 1.475 -1.688 -1.087 -1.185 + D 237 235 3 238 2 0 0 0 0 * 0.000 + IL 238 238 3 238 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 64 ] - - - - - - + E 239 238 3 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | October 2013] +NAME Hammerhead_HH9 +ACC RF02275 +LENG 77 +MAXL 166 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Fri Feb 28 01:30:53 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +NSEQ 33 +EFFN 2.219604 +CKSUM 796486396 +STATS LOCAL MSV -8.8496 0.71890 +STATS LOCAL VITERBI -9.3336 0.71890 +STATS LOCAL FORWARD -4.0471 0.71890 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.31725 1.38958 1.36177 1.48394 + 1.38629 1.38629 1.38629 1.38629 + 0.23584 3.90062 1.66143 1.46634 0.26236 0.00000 * + 1 1.62034 1.46101 2.09577 0.80477 1 u - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04995 3.71472 3.71472 1.46634 0.26236 1.50249 0.25177 + 2 1.61228 1.42275 2.03579 0.84644 2 u - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 0.22692 1.59448 + 3 1.29816 2.02841 0.90551 1.65503 3 g - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 4 1.27128 1.88516 0.94878 1.71196 4 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 5 2.39214 3.09549 0.20715 2.98743 5 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 6 3.13217 0.25594 2.90124 2.06174 6 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 7 2.87265 0.24622 2.80962 2.28795 7 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 8 1.68120 2.27610 0.51345 2.18268 8 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.07418 2.97076 3.90062 0.66121 0.72613 1.09861 0.40547 + 9 2.55429 2.52778 3.06936 0.22820 10 U - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 10 2.55429 2.52778 3.06936 0.22820 11 U - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 11 0.26628 2.83571 2.35745 2.52026 12 A - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 12 2.77408 0.21654 3.34930 2.33116 13 C - - - + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 13 3.13218 0.25594 2.90125 2.06175 14 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 14 2.90343 1.85418 2.64627 0.33175 15 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 15 1.64887 2.63991 0.42081 2.52761 16 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 16 3.13571 0.25552 2.90290 2.06235 17 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 17 0.36748 2.70007 1.78040 2.63452 18 A - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 18 2.54639 3.17803 0.17945 3.11808 19 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 19 2.77408 0.21654 3.34930 2.33116 20 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 20 2.55429 2.52778 3.06936 0.22820 21 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 21 2.63875 3.50800 0.15924 3.08351 22 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 22 0.16531 3.17973 2.90967 2.87749 23 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 23 2.55429 2.52778 3.06936 0.22820 24 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 24 2.63875 3.50800 0.15924 3.08351 25 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 25 0.16531 3.17973 2.90967 2.87749 26 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 26 2.55311 3.18579 0.17787 3.12896 27 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 27 3.14279 0.25469 2.90619 2.06356 28 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 28 2.86110 1.83249 2.61025 0.34353 29 U - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 29 3.12324 0.25699 2.89707 2.06021 30 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 30 2.77408 0.21654 3.34930 2.33116 31 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 31 0.16531 3.17973 2.90967 2.87749 32 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 32 0.16531 3.17973 2.90967 2.87749 33 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 33 0.66660 2.09592 1.64667 1.76667 34 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 34 0.16531 3.17973 2.90967 2.87749 35 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 35 0.16531 3.17973 2.90967 2.87749 36 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 36 2.33798 3.06863 0.22125 2.89182 37 G - 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- ) + 1.38629 1.38629 1.38629 1.38629 + 0.04130 3.90062 3.90062 1.46634 0.26236 1.09861 0.40547 + 69 1.61663 2.00825 1.87483 0.66586 76 U - - : + 1.38629 1.38629 1.38629 1.38629 + 0.19731 3.90062 1.83991 1.46634 0.26236 1.09861 0.40547 + 70 0.81558 2.17566 1.32970 1.71742 77 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 2.28762 0.10704 + 71 0.81612 1.82472 1.79275 1.46927 78 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 2.28762 0.10704 + 72 1.34010 1.90825 1.16493 1.28051 79 g - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 2.28762 0.10704 + 73 0.90336 1.74956 1.59163 1.52624 80 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 2.28762 0.10704 + 74 1.18139 1.49660 1.80689 1.18714 81 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.04811 3.75142 3.75142 1.46634 0.26236 2.28762 0.10704 + 75 1.10246 1.68127 1.41247 1.43435 82 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.15306 3.75142 2.13335 1.46634 0.26236 2.28762 0.10704 + 76 1.27283 1.40257 1.54710 1.34272 83 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05329 3.65165 3.65165 1.46634 0.26236 2.63151 0.07469 + 77 1.34601 1.64433 2.07238 0.86584 84 u - - : + 1.38629 1.38629 1.38629 1.38629 + 0.49277 0.94400 * 0.13173 2.09216 0.00000 * +// diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_HH9.pdf Binary file test-data/Hammerhead_HH9.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/Hammerhead_II.pdf Binary file test-data/Hammerhead_II.pdf has changed diff -r 000000000000 -r fccb17c9e7ef test-data/hammerheadClan.cm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hammerheadClan.cm Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,1447 @@ +INFERNAL1/a [1.1 | October 2013] +NAME Hammerhead_HH10 +ACC RF02277 +STATES 384 +NODES 97 +CLEN 125 +W 144 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Thu Feb 20 19:56:21 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 18 +EFFN 0.962402 +CKSUM 3402290674 +NULL 0.000 0.000 0.000 0.000 +GA 75.00 +TC 83.00 +NC 68.00 +EFP7GF -5.2222 0.71834 +ECMLC 0.67226 -5.99835 2.14435 1600000 286094 0.004194 +ECMGC 0.39225 -16.80988 -7.07053 1600000 18247 0.021921 +ECMLI 0.60414 -4.80295 3.82929 1600000 220830 0.005434 +ECMGI 0.45551 -9.18438 -0.78188 1600000 18377 0.021766 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 1 1 144 166 -6.485 -6.692 -0.074 -5.106 + IL 1 1 2 1 4 27 71 148 169 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 27 70 147 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 1 ] 1 - u - - - + ML 3 2 3 5 3 27 70 144 166 -7.540 -0.028 -6.194 0.306 -0.505 -0.844 0.587 + D 4 2 3 5 3 22 65 143 164 -6.174 -1.687 -0.566 + IL 5 5 3 5 3 26 69 146 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 2 ] 2 - a - - - + ML 6 5 3 8 3 26 69 143 165 -7.540 -0.028 -6.194 0.988 -1.096 -0.227 -0.526 + D 7 5 3 8 3 21 64 142 163 -6.174 -1.687 -0.566 + IL 8 8 3 8 3 25 68 145 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 3 ] 3 - a - - - + ML 9 8 3 11 3 25 68 142 164 -7.540 -0.028 -6.194 0.990 -0.979 -0.488 -0.332 + D 10 8 3 11 3 20 63 141 162 -6.174 -1.687 -0.566 + IL 11 11 3 11 3 25 68 144 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 4 ] 4 - a - - - + ML 12 11 3 14 3 24 67 141 163 -7.540 -0.028 -6.194 0.838 -0.660 -0.654 -0.083 + D 13 11 3 14 3 20 62 140 161 -6.174 -1.687 -0.566 + IL 14 14 3 14 3 24 67 143 164 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 5 ] 5 - A - - - + ML 15 14 3 17 3 24 66 140 162 -7.540 -0.028 -6.194 1.114 -1.046 -0.756 -0.397 + D 16 14 3 17 3 19 62 139 160 -6.174 -1.687 -0.566 + IL 17 17 3 17 3 23 66 142 163 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 6 ] 6 - A - - - + ML 18 17 3 20 3 23 65 139 161 -7.540 -0.028 -6.194 1.323 -1.350 -0.895 -0.815 + D 19 17 3 20 3 18 61 138 159 -6.174 -1.687 -0.566 + IL 20 20 3 20 3 22 65 141 162 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 7 ] 7 - a - - - + ML 21 20 3 23 3 22 65 138 159 -7.962 -0.025 -6.280 0.557 -0.700 -0.383 0.197 + D 22 20 3 23 3 18 60 137 158 -5.620 -0.734 -1.403 + IL 23 23 3 23 3 21 64 139 160 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 8 ] - 133 - a - - + MR 24 23 3 26 3 22 64 137 158 -7.962 -0.025 -6.280 0.727 -0.433 -0.471 -0.179 + D 25 23 3 26 3 16 58 135 157 -6.390 -1.568 -0.620 + IR 26 26 3 26 3 21 63 138 159 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 9 ] - 132 - a - - + MR 27 26 3 29 3 21 63 136 157 -7.962 -0.025 -6.280 0.594 -0.566 -0.806 0.314 + D 28 26 3 29 3 15 57 134 156 -6.390 -1.568 -0.620 + IR 29 29 3 29 3 20 62 137 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 10 ] - 131 - a - - + MR 30 29 3 32 3 21 63 135 156 -7.962 -0.025 -6.280 0.736 -0.172 -0.837 -0.174 + D 31 29 3 32 3 15 55 134 155 -6.390 -1.568 -0.620 + IR 32 32 3 32 3 19 61 136 157 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 11 ] - 130 - g - - + MR 33 32 3 35 5 20 62 134 155 -6.730 -0.050 -6.546 -6.758 -7.650 0.482 -1.086 0.502 -0.484 + D 34 32 3 35 5 14 54 133 154 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 35 35 3 35 5 18 59 134 156 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 12 ] 8 129 u a - - + MP 36 35 3 40 6 22 62 133 154 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -1.947 -2.633 -2.808 0.807 -2.371 -3.585 1.735 -2.862 -2.845 1.182 -3.351 -0.760 2.451 -2.957 -0.044 -1.833 + ML 37 35 3 40 6 16 56 132 153 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 38 35 3 40 6 15 56 131 153 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 39 35 3 40 6 11 50 129 150 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 40 40 5 40 6 17 58 133 154 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 41 41 6 41 5 17 59 132 154 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 13 ] 9 128 G C - - + MP 42 41 6 46 6 21 61 131 152 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.358 -2.490 -3.421 0.958 -3.514 -4.008 0.762 -3.659 -2.238 3.103 -3.811 -0.262 0.413 -3.427 -1.177 -2.392 + ML 43 41 6 46 6 15 56 130 151 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 44 41 6 46 6 15 55 129 151 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 45 41 6 46 6 11 50 127 148 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 46 46 5 46 6 17 57 131 152 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 47 47 6 47 5 17 58 130 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 14 ] 10 127 u a - - + MP 48 47 6 52 6 20 60 129 150 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.350 -3.208 -3.275 0.418 -2.399 -3.891 1.896 -3.049 -3.307 0.811 -3.717 -1.205 2.692 -3.504 0.163 -2.197 + ML 49 47 6 52 6 15 55 128 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 50 47 6 52 6 15 54 127 149 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 51 47 6 52 6 11 49 125 146 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 52 52 5 52 6 16 57 129 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 53 53 6 53 5 17 57 128 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 15 ] 11 126 u a - - + MP 54 53 6 58 6 19 58 127 148 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.458 -3.230 -3.368 0.410 -2.487 -3.992 1.818 -3.122 -3.384 0.828 -3.788 -1.143 2.793 -3.627 -0.182 -2.268 + ML 55 53 6 58 6 14 54 126 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 56 53 6 58 6 14 53 126 147 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 57 53 6 58 6 10 49 123 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 58 58 5 58 6 16 55 127 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 59 59 6 59 5 16 56 126 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 16 ] 12 125 u a - - + MP 60 59 6 64 6 18 56 125 146 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.179 -3.125 -3.162 0.447 -1.584 -3.825 1.873 -3.001 -3.190 0.745 -3.634 -1.207 2.712 -3.370 -0.108 -2.113 + ML 61 59 6 64 6 14 53 124 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 62 59 6 64 6 13 52 124 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 63 59 6 64 6 10 48 121 143 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 64 64 5 64 6 15 54 125 146 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 65 65 6 65 5 15 54 125 146 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 17 ] 13 124 C G - - + MP 66 65 6 70 6 16 54 123 144 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 67 65 6 70 6 13 52 122 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 68 65 6 70 6 12 50 122 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 69 65 6 70 6 10 48 120 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 70 70 5 70 6 14 53 123 144 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 71 71 6 71 5 14 53 123 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 18 ] 14 123 u a - - + MP 72 71 6 76 4 15 52 121 142 -6.485 -6.692 -0.074 -5.106 -3.458 -3.230 -3.368 0.410 -2.487 -3.992 1.818 -3.122 -3.384 0.828 -3.788 -1.143 2.793 -3.627 -0.182 -2.268 + ML 73 71 6 76 4 12 51 121 142 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 74 71 6 76 4 11 49 121 142 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 75 71 6 76 4 9 48 119 141 -4.568 -4.250 -2.265 -0.520 + IL 76 76 5 76 4 14 52 122 144 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 77 77 6 77 3 13 51 122 143 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 19 ] 15 - u - - - + ML 78 77 6 80 5 13 50 119 140 -6.730 -0.050 -6.546 -6.758 -7.650 -0.341 -0.517 -0.874 0.975 + D 79 77 6 80 5 9 47 118 139 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 80 80 3 80 5 12 50 119 140 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 20 ] 16 122 G C - - + MP 81 80 3 85 6 13 50 118 139 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.931 -2.716 -3.988 0.711 -4.091 -4.346 0.358 -4.146 -3.747 3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 + ML 82 80 3 85 6 10 47 116 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 83 80 3 85 6 10 47 116 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 84 80 3 85 6 7 44 114 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 85 85 5 85 6 11 48 118 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 86 86 6 86 5 11 48 117 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 21 ] 17 121 a u - - + MP 87 86 6 91 6 11 48 116 137 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.218 -2.412 -3.266 2.739 -3.316 -4.351 0.957 -3.331 -3.190 1.721 -3.706 -0.001 0.529 -3.635 -0.992 -2.142 + ML 88 86 6 91 6 9 46 115 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 89 86 6 91 6 9 46 114 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 90 86 6 91 6 6 43 112 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 91 91 5 91 6 10 47 116 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 92 92 6 92 5 10 47 115 136 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 22 ] 18 120 C G - - + MP 93 92 6 97 4 9 46 114 135 -6.445 -7.690 -0.170 -3.399 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 94 92 6 97 4 8 45 113 134 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 + MR 95 92 6 97 4 8 45 113 134 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 + D 96 92 6 97 4 6 43 111 132 -12.737 -14.007 -2.036 -0.404 + IL 97 97 5 97 4 8 45 113 134 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 + IR 98 98 6 98 3 8 45 114 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 23 ] - 119 - U - - + MR 99 98 6 101 2 7 44 112 133 -7.756 -0.007 -0.662 -0.821 -1.334 1.266 + D 100 98 6 101 2 6 43 111 132 -4.737 -0.055 + IR 101 101 3 101 2 7 44 113 134 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ BIF 24 ] - - - - - - + B 102 101 3 103 153 6 43 111 132 + [ BEGL 25 ] - - - - - - + S 103 102 1 104 4 0 0 30 49 -0.052 -6.618 -6.025 -6.665 + [ MATP 26 ] 19 34 C G - - + MP 104 103 1 108 6 2 2 30 49 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.411 -3.264 -2.373 0.303 -2.666 -4.057 3.146 -3.280 -3.436 0.703 -3.858 -1.283 0.984 -3.599 -0.423 -2.368 + ML 105 103 1 108 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 106 103 1 108 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 107 103 1 108 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 108 108 5 108 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 109 109 6 109 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 27 ] 20 33 a u - - + MP 110 109 6 114 6 2 2 28 47 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.124 -2.311 -3.201 2.668 -3.406 -4.324 0.849 -3.329 -3.125 1.827 -3.656 0.283 0.506 -3.543 -1.086 -2.084 + ML 111 109 6 114 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 112 109 6 114 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 113 109 6 114 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 114 114 5 114 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 115 115 6 115 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 28 ] 21 32 G C - - + MP 116 115 6 120 6 2 2 26 45 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.931 -2.716 -3.988 0.711 -4.091 -4.346 0.358 -4.146 -3.747 3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 + ML 117 115 6 120 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 118 115 6 120 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 119 115 6 120 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 120 120 5 120 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 121 121 6 121 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 22 31 u g - - + MP 122 121 6 126 6 2 2 24 43 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.330 -3.202 -3.198 0.384 -2.228 -3.754 2.032 -2.913 -3.233 0.733 -3.606 -1.221 1.312 -3.477 2.260 -2.144 + ML 123 121 6 126 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 124 121 6 126 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 125 121 6 126 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 126 126 5 126 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 127 127 6 127 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 23 30 u a - - + MP 128 127 6 132 6 2 2 22 41 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.458 -3.230 -3.368 0.410 -2.487 -3.992 1.818 -3.122 -3.384 0.828 -3.788 -1.143 2.793 -3.627 -0.182 -2.268 + ML 129 127 6 132 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 130 127 6 132 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 131 127 6 132 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 132 132 5 132 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 133 133 6 133 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 31 ] 24 29 G C - - + MP 134 133 6 138 4 2 2 20 39 -6.485 -6.692 -0.074 -5.106 -3.616 -1.822 -3.677 0.897 -3.953 -4.168 0.418 -3.959 -3.570 3.254 -3.987 -0.263 0.096 -3.625 -1.539 -2.621 + ML 135 133 6 138 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 136 133 6 138 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 137 133 6 138 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 + IL 138 138 5 138 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 139 139 6 139 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 32 ] 25 - C - - - + ML 140 139 6 142 3 1 1 17 35 -7.540 -0.028 -6.194 -0.791 1.219 -1.560 -0.406 + D 141 139 6 142 3 0 0 16 35 -6.174 -1.687 -0.566 + IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 33 ] 26 - C - - - + ML 143 142 3 145 3 1 1 15 34 -7.540 -0.028 -6.194 -0.791 1.219 -1.560 -0.406 + D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 34 ] 27 - U - - - + ML 146 145 3 148 3 1 1 13 32 -7.540 -0.028 -6.194 -0.752 -0.890 -1.433 1.320 + D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 35 ] 28 - A - - - + ML 149 148 3 151 2 1 1 1 1 * 0.000 1.208 -1.231 -0.642 -0.684 + D 150 148 3 151 2 0 0 0 0 * 0.000 + IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 36 ] - - - - - - + E 152 151 3 -1 0 0 0 0 0 + [ BEGR 37 ] - - - - - - + S 153 102 1 154 3 0 30 95 115 -7.540 -0.028 -6.194 + IL 154 154 2 154 3 1 30 97 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 35 - A - - - + ML 155 154 2 157 3 1 30 95 115 -7.540 -0.028 -6.194 1.458 -1.546 -1.259 -1.020 + D 156 154 2 157 3 0 24 93 114 -6.174 -1.687 -0.566 + IL 157 157 3 157 3 1 29 96 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 39 ] 36 - U - - - + ML 158 157 3 160 3 1 29 94 114 -7.540 -0.028 -6.194 -0.595 -0.605 -1.294 1.185 + D 159 157 3 160 3 0 24 92 113 -6.174 -1.687 -0.566 + IL 160 160 3 160 3 1 28 95 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 40 ] 37 - G - - - + ML 161 160 3 163 3 1 28 92 113 -7.540 -0.028 -6.194 -0.695 -1.750 1.395 -1.138 + D 162 160 3 163 3 0 23 91 112 -6.174 -1.687 -0.566 + IL 163 163 3 163 3 1 28 94 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 41 ] 38 - A - - - + ML 164 163 3 166 3 1 28 91 112 -7.540 -0.028 -6.194 1.458 -1.546 -1.259 -1.020 + D 165 163 3 166 3 0 22 90 111 -6.174 -1.687 -0.566 + IL 166 166 3 166 3 1 27 93 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 42 ] 39 - G - - - + ML 167 166 3 169 3 1 27 90 111 -7.540 -0.028 -6.194 -0.695 -1.750 1.395 -1.138 + D 168 166 3 169 3 0 21 89 110 -6.174 -1.687 -0.566 + IL 169 169 3 169 3 1 26 92 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 43 ] 40 - C - - - + ML 170 169 3 172 3 1 26 89 110 -7.540 -0.028 -6.194 -0.791 1.219 -1.560 -0.406 + D 171 169 3 172 3 0 20 88 109 -6.174 -1.687 -0.566 + IL 172 172 3 172 3 1 25 91 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 44 ] 41 - U - - - + ML 173 172 3 175 3 1 26 88 109 -7.540 -0.028 -6.194 -0.752 -0.890 -1.433 1.320 + D 174 172 3 175 3 0 19 87 108 -6.174 -1.687 -0.566 + IL 175 175 3 175 3 1 25 90 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 45 ] 42 - C - - - + ML 176 175 3 178 5 1 25 87 108 -6.730 -0.100 -4.534 -6.758 -7.650 -0.791 1.219 -1.560 -0.406 + D 177 175 3 178 5 0 18 86 107 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 178 178 3 178 5 1 23 88 108 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 46 ] 43 118 C G - - + MP 179 178 3 183 6 2 26 86 107 -8.928 -8.868 -0.024 -7.644 -7.924 -8.319 -3.677 -3.473 -3.500 0.193 -2.451 -4.020 3.140 -3.163 -3.533 0.628 -3.874 -1.407 1.132 -3.793 -0.149 -2.408 + ML 180 178 3 183 6 1 20 85 106 -6.462 -6.808 -1.045 -1.216 -6.658 -4.187 0.129 0.154 -0.550 0.151 + MR 181 178 3 183 6 1 20 85 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 182 178 3 183 6 0 15 82 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 183 183 5 183 6 1 22 86 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 184 184 6 184 5 1 22 86 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 47 ] 44 117 a u - - + MP 185 184 6 189 6 2 24 84 105 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.218 -2.412 -3.266 2.739 -3.316 -4.351 0.957 -3.331 -3.190 1.721 -3.706 -0.001 0.529 -3.635 -0.992 -2.142 + ML 186 184 6 189 6 1 20 83 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 187 184 6 189 6 1 19 83 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 188 184 6 189 6 0 15 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 189 189 5 189 6 1 21 84 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 190 190 6 190 5 1 21 84 104 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 48 ] 45 116 G C - - + MP 191 190 6 195 6 2 23 82 103 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.931 -2.716 -3.988 0.711 -4.091 -4.346 0.358 -4.146 -3.747 3.360 -4.149 -0.400 -0.057 -3.923 -1.643 -2.878 + ML 192 190 6 195 6 1 19 81 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 193 190 6 195 6 1 18 81 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 194 190 6 195 6 0 14 78 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 195 195 5 195 6 1 20 82 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 196 196 6 196 5 1 20 82 102 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 49 ] 46 115 u a - - + MP 197 196 6 201 6 2 21 80 101 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.179 -3.125 -3.162 0.447 -1.584 -3.825 1.873 -3.001 -3.190 0.745 -3.634 -1.207 2.712 -3.370 -0.108 -2.113 + ML 198 196 6 201 6 1 18 79 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 199 196 6 201 6 1 16 79 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 200 196 6 201 6 0 14 77 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 201 201 5 201 6 1 19 80 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 202 202 6 202 5 1 19 80 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 50 ] 47 114 a u - - + MP 203 202 6 207 4 2 19 78 99 -6.485 -6.692 -0.074 -5.106 -2.915 -2.457 -2.979 2.605 -2.881 -3.901 1.229 -2.051 -3.013 1.519 -3.522 -0.284 0.845 -3.206 -0.668 -1.981 + ML 204 202 6 207 4 1 17 78 99 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 205 202 6 207 4 1 15 78 99 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 206 202 6 207 4 0 13 77 98 -4.568 -4.250 -2.265 -0.520 + IL 207 207 5 207 4 1 18 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 208 208 6 208 3 1 18 79 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 51 ] 48 - A - - - + ML 209 208 6 211 3 1 17 76 96 -7.540 -0.028 -6.194 1.458 -1.546 -1.259 -1.020 + D 210 208 6 211 3 0 13 74 95 -6.174 -1.687 -0.566 + IL 211 211 3 211 3 1 17 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 49 - G - - - + ML 212 211 3 214 3 1 16 75 95 -7.540 -0.028 -6.194 -0.695 -1.750 1.395 -1.138 + D 213 211 3 214 3 0 12 73 94 -6.174 -1.687 -0.566 + IL 214 214 3 214 3 1 16 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 50 - A - - - + ML 215 214 3 217 3 1 16 74 94 -7.962 -0.025 -6.280 1.458 -1.546 -1.259 -1.020 + D 216 214 3 217 3 0 11 73 93 -5.620 -0.734 -1.403 + IL 217 217 3 217 3 1 15 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 54 ] - 113 - G - - + MR 218 217 3 220 3 1 15 73 93 -7.962 -0.025 -6.280 -0.695 -1.750 1.395 -1.138 + D 219 217 3 220 3 0 9 71 92 -6.390 -1.568 -0.620 + IR 220 220 3 220 3 1 14 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 55 ] - 112 - A - - + MR 221 220 3 223 5 1 14 72 92 -6.730 -0.050 -6.546 -6.758 -7.650 1.458 -1.546 -1.259 -1.020 + D 222 220 3 223 5 0 8 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 223 223 3 223 5 1 12 72 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 56 ] 51 111 g u - - + MP 224 223 3 228 6 2 14 71 91 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.140 -2.145 -3.259 1.373 -3.578 -4.354 0.714 -3.356 -3.076 1.990 -3.579 2.293 0.351 -3.633 -1.221 -2.081 + ML 225 223 3 228 6 1 10 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 226 223 3 228 6 1 9 69 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 227 223 3 228 6 0 5 67 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 228 228 5 228 6 1 11 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 229 229 6 229 5 1 11 70 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 57 ] 52 110 C G - - + MP 230 229 6 234 6 2 12 69 89 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 231 229 6 234 6 1 9 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 232 229 6 234 6 1 8 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 233 229 6 234 6 0 5 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 234 234 5 234 6 1 10 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 235 235 6 235 5 1 10 68 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 58 ] 53 109 g u - - + MP 236 235 6 240 4 2 11 67 87 -6.485 -6.692 -0.074 -5.106 -3.140 -2.145 -3.259 1.373 -3.578 -4.354 0.714 -3.356 -3.076 1.990 -3.579 2.293 0.351 -3.633 -1.221 -2.081 + ML 237 235 6 240 4 1 8 67 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 238 235 6 240 4 1 6 66 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 239 235 6 240 4 0 5 65 86 -4.568 -4.250 -2.265 -0.520 + IL 240 240 5 240 4 1 10 68 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 241 241 6 241 3 1 9 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 59 ] 54 - A - - - + ML 242 241 6 244 3 1 9 65 85 -7.540 -0.028 -6.194 1.458 -1.546 -1.259 -1.020 + D 243 241 6 244 3 0 4 63 83 -6.174 -1.687 -0.566 + IL 244 244 3 244 3 1 8 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 60 ] 55 - A - - - + ML 245 244 3 247 3 1 8 64 84 -7.962 -0.025 -6.280 1.458 -1.546 -1.259 -1.020 + D 246 244 3 247 3 0 3 62 82 -5.620 -0.734 -1.403 + IL 247 247 3 247 3 1 7 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 61 ] - 108 - C - - + MR 248 247 3 250 3 1 8 63 83 -7.962 -0.025 -6.280 -0.791 1.219 -1.560 -0.406 + D 249 247 3 250 3 0 2 61 81 -6.390 -1.568 -0.620 + IR 250 250 3 250 3 1 7 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 62 ] - 107 - C - - + MR 251 250 3 253 5 1 8 62 82 -6.730 -0.050 -6.546 -6.758 -7.650 -0.791 1.219 -1.560 -0.406 + D 252 250 3 253 5 0 1 60 80 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 253 253 3 253 5 1 5 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 63 ] 56 106 a u - - + MP 254 253 3 258 6 2 8 61 81 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.218 -2.412 -3.266 2.739 -3.316 -4.351 0.957 -3.331 -3.190 1.721 -3.706 -0.001 0.529 -3.635 -0.992 -2.142 + ML 255 253 3 258 6 1 3 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 256 253 3 258 6 1 3 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 257 253 3 258 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 258 258 5 258 6 1 4 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 259 259 6 259 5 1 5 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 64 ] 57 105 C G - - + MP 260 259 6 264 6 2 7 59 79 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 261 259 6 264 6 1 3 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 262 259 6 264 6 1 3 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 263 259 6 264 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 264 264 5 264 6 1 4 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 265 265 6 265 5 1 4 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 65 ] 58 104 C G - - + MP 266 265 6 270 6 2 6 57 77 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 267 265 6 270 6 1 2 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 268 265 6 270 6 1 2 55 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 269 265 6 270 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 270 270 5 270 6 1 3 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 271 271 6 271 5 1 3 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 66 ] 59 103 a u - - + MP 272 271 6 276 4 2 4 55 75 -6.485 -6.692 -0.074 -5.106 -3.218 -2.412 -3.266 2.739 -3.316 -4.351 0.957 -3.331 -3.190 1.721 -3.706 -0.001 0.529 -3.635 -0.992 -2.142 + ML 273 271 6 276 4 1 1 55 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 274 271 6 276 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 275 271 6 276 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 + IL 276 276 5 276 4 1 3 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 277 277 6 277 3 1 2 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 67 ] 60 - g - - - + ML 278 277 6 280 3 1 2 52 72 -7.962 -0.025 -6.280 -0.052 -0.640 0.664 -0.306 + D 279 277 6 280 3 0 0 51 71 -5.620 -0.734 -1.403 + IL 280 280 3 280 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 68 ] - 102 - U - - + MR 281 280 3 283 5 1 2 51 71 -6.730 -0.050 -6.546 -6.758 -7.650 -0.752 -0.890 -1.433 1.320 + D 282 280 3 283 5 0 0 50 70 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 283 283 3 283 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 69 ] 61 101 u a - - + MP 284 283 3 288 6 2 4 50 70 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -2.847 -2.728 -2.924 0.709 -2.493 -3.685 1.611 -2.982 -2.969 1.171 -3.466 -0.838 2.623 -2.038 -0.300 -1.945 + ML 285 283 3 288 6 1 1 49 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 286 283 3 288 6 1 1 49 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 287 283 3 288 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 288 288 5 288 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 289 289 6 289 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 70 ] 62 100 u a - - + MP 290 289 6 294 6 2 3 48 68 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.335 -3.198 -3.263 0.427 -2.391 -3.881 1.902 -3.041 -3.295 0.816 -3.706 -1.199 2.675 -3.490 0.206 -2.187 + ML 291 289 6 294 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 292 289 6 294 6 1 1 47 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 293 289 6 294 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 294 294 5 294 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 295 295 6 295 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 71 ] 63 99 C G - - + MP 296 295 6 300 4 2 2 46 66 -6.485 -6.692 -0.074 -5.106 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 297 295 6 300 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 298 295 6 300 4 1 1 46 66 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 299 295 6 300 4 0 0 45 65 -4.568 -4.250 -2.265 -0.520 + IL 300 300 5 300 4 1 1 48 68 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 301 301 6 301 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 72 ] 64 - U - - - + ML 302 301 6 304 3 1 1 44 63 -7.962 -0.025 -6.280 -0.752 -0.890 -1.433 1.320 + D 303 301 6 304 3 0 0 43 62 -5.620 -0.734 -1.403 + IL 304 304 3 304 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 73 ] - 98 - U - - + MR 305 304 3 307 5 1 1 43 62 -6.730 -0.050 -6.546 -6.758 -7.650 -0.536 -0.468 -1.240 1.114 + D 306 304 3 307 5 0 0 41 61 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 307 307 3 307 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 74 ] 65 97 C G - - + MP 308 307 3 312 6 2 2 42 61 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 309 307 3 312 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 310 307 3 312 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 311 307 3 312 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 312 312 5 312 6 1 1 41 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 313 313 6 313 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 75 ] 66 96 a u - - + MP 314 313 6 318 6 2 2 40 59 -8.948 -8.887 -0.024 -7.664 -7.943 -8.338 -3.218 -2.412 -3.266 2.739 -3.316 -4.351 0.957 -3.331 -3.190 1.721 -3.706 -0.001 0.529 -3.635 -0.992 -2.142 + ML 315 313 6 318 6 1 1 38 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 316 313 6 318 6 1 1 38 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 317 313 6 318 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 318 318 5 318 6 1 1 39 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 319 319 6 319 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 76 ] 67 95 C G - - + MP 320 319 6 324 4 2 2 38 57 -2.383 -6.692 -0.415 -4.366 -3.764 -3.576 -3.575 0.101 -2.498 -4.085 3.200 -3.222 -3.609 0.506 -3.943 -1.514 1.080 -3.877 -0.196 -2.480 + ML 321 319 6 324 4 1 1 37 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 322 319 6 324 4 1 1 36 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 323 319 6 324 4 0 0 35 55 -4.568 -4.250 -2.265 -0.520 + IL 324 324 5 324 4 1 1 37 57 -2.339 -3.023 -0.605 -5.508 0.000 0.000 0.000 0.000 + IR 325 325 6 325 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 77 ] 74 - c - - - + ML 326 325 6 328 3 1 1 34 54 -5.313 -0.057 -6.168 -0.279 0.575 -0.890 0.198 + D 327 325 6 328 3 0 0 33 52 -6.339 -1.377 -0.731 + IL 328 328 3 328 3 1 1 36 56 -1.489 -0.764 -4.189 0.000 0.000 0.000 0.000 + [ MATL 78 ] 76 - c - - - + ML 329 328 3 331 3 1 1 33 52 -5.308 -0.057 -6.194 -0.442 0.667 -1.194 0.310 + D 330 328 3 331 3 0 0 31 51 -6.174 -1.687 -0.566 + IL 331 331 3 331 3 1 1 35 54 -1.491 -0.763 -4.191 0.000 0.000 0.000 0.000 + [ MATL 79 ] 78 - A - - - + ML 332 331 3 334 3 1 1 32 51 -7.540 -0.028 -6.194 1.018 -1.109 -0.278 -0.542 + D 333 331 3 334 3 0 0 30 50 -6.174 -1.687 -0.566 + IL 334 334 3 334 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 80 ] 79 - c - - - + ML 335 334 3 337 3 1 1 31 50 -7.540 -0.028 -6.194 -0.574 0.956 -1.338 -0.010 + D 336 334 3 337 3 0 0 29 49 -6.174 -1.687 -0.566 + IL 337 337 3 337 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 81 ] 80 - u - - - + ML 338 337 3 340 3 1 1 29 49 -7.540 -0.028 -6.194 -0.214 -0.625 -0.780 0.931 + D 339 337 3 340 3 0 0 28 48 -6.174 -1.687 -0.566 + IL 340 340 3 340 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 82 ] 81 - G - - - + ML 341 340 3 343 3 1 1 28 48 -7.540 -0.028 -6.194 -0.695 -1.750 1.395 -1.138 + D 342 340 3 343 3 0 0 27 46 -6.174 -1.687 -0.566 + IL 343 343 3 343 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 83 ] 82 - A - - - + ML 344 343 3 346 3 1 1 27 46 -7.540 -0.028 -6.194 1.458 -1.546 -1.259 -1.020 + D 345 343 3 346 3 0 0 26 45 -6.174 -1.687 -0.566 + IL 346 346 3 346 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 84 ] 83 - A - - - + ML 347 346 3 349 3 1 1 26 45 -7.540 -0.057 -4.915 1.250 -1.182 -1.046 -0.523 + D 348 346 3 349 3 0 0 25 44 -6.174 -1.687 -0.566 + IL 349 349 3 349 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 85 ] 84 - A - - - + ML 350 349 3 352 3 1 1 25 44 -7.511 -0.028 -6.165 1.240 -1.247 -0.732 -0.703 + D 351 349 3 352 3 0 0 24 43 -6.356 -1.869 -0.486 + IL 352 352 3 352 3 1 1 27 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 86 ] 85 - c - - - + ML 353 352 3 355 3 1 1 24 43 -7.511 -0.028 -6.165 -0.419 0.648 -1.167 0.309 + D 354 352 3 355 3 0 0 23 42 -6.356 -1.351 -0.747 + IL 355 355 3 355 3 1 1 26 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 87 ] 86 - A - - - + ML 356 355 3 358 3 1 1 23 42 -7.540 -0.028 -6.194 1.059 -1.129 -0.353 -0.566 + D 357 355 3 358 3 0 0 22 41 -6.174 -1.687 -0.566 + IL 358 358 3 358 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 88 ] 87 - a - - - + ML 359 358 3 361 3 1 1 22 40 -7.540 -0.028 -6.194 0.741 -0.687 -0.298 -0.162 + D 360 358 3 361 3 0 0 20 39 -6.174 -1.687 -0.566 + IL 361 361 3 361 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 89 ] 88 - U - - - + ML 362 361 3 364 3 1 1 20 39 -7.540 -0.028 -6.194 -0.752 -0.890 -1.433 1.320 + D 363 361 3 364 3 0 0 19 38 -6.174 -1.687 -0.566 + IL 364 364 3 364 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 90 ] 89 - u - - - + ML 365 364 3 367 3 1 1 19 38 -7.540 -0.028 -6.194 -0.286 -0.403 -1.064 0.960 + D 366 364 3 367 3 0 0 18 37 -6.174 -1.687 -0.566 + IL 367 367 3 367 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 91 ] 90 - U - - - + ML 368 367 3 370 3 1 1 18 36 -7.540 -0.028 -6.194 -0.752 -0.890 -1.433 1.320 + D 369 367 3 370 3 0 0 17 36 -6.174 -1.687 -0.566 + IL 370 370 3 370 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 92 ] 91 - u - - - + ML 371 370 3 373 3 1 1 17 35 -7.540 -0.028 -6.194 -0.268 -0.346 -1.049 0.925 + D 372 370 3 373 3 0 0 16 35 -6.174 -1.687 -0.566 + IL 373 373 3 373 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 93 ] 92 - G - - - + ML 374 373 3 376 3 1 1 15 34 -7.540 -0.028 -6.194 -0.180 -1.406 1.113 -0.794 + D 375 373 3 376 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 376 376 3 376 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 94 ] 93 - A - - - + ML 377 376 3 379 3 1 1 13 32 -7.540 -0.028 -6.194 1.326 -1.353 -0.902 -0.819 + D 378 376 3 379 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 379 379 3 379 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 95 ] 94 - A - - - + ML 380 379 3 382 2 1 1 1 1 * 0.000 1.458 -1.546 -1.259 -1.020 + D 381 379 3 382 2 0 0 0 0 * 0.000 + IL 382 382 3 382 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 96 ] - - - - - - + E 383 382 3 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | October 2013] +NAME Hammerhead_HH10 +ACC RF02277 +LENG 125 +MAXL 234 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Thu Feb 20 19:56:21 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +NSEQ 18 +EFFN 1.305176 +CKSUM 3402290674 +STATS LOCAL MSV -9.6646 0.71834 +STATS LOCAL VITERBI -11.1251 0.71834 +STATS LOCAL FORWARD -3.3883 0.71834 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.31993 1.46967 1.39447 1.36696 + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 0.00000 * + 1 1.17390 1.76507 2.02746 0.94676 1 u - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 2 0.64831 2.23977 1.54517 1.84952 2 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 3 0.65295 2.13248 1.75167 1.67417 3 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 4 0.76528 1.87250 1.88046 1.47605 4 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 5 0.55779 2.19202 1.97470 1.73143 5 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 6 0.39413 2.47350 2.11236 2.11617 6 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 7 0.98084 1.91173 1.65934 1.24856 7 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 8 1.96420 1.50462 1.74504 0.77004 8 u - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 9 1.99781 2.27848 0.42994 2.19482 9 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 10 2.38041 1.44557 2.07312 0.60498 10 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 11 2.42360 1.52021 2.09512 0.56269 11 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 12 2.33723 1.42387 2.08460 0.61940 12 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 13 2.65196 0.42513 2.34404 1.71554 13 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 14 2.42307 1.52023 2.09497 0.56279 14 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 15 1.71613 1.80130 2.07339 0.63602 15 U - - - + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 16 2.22878 2.63319 0.29402 2.58719 16 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 17 0.65542 2.16514 1.40212 2.12056 17 A - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 18 2.65149 0.42523 2.34387 1.71548 18 C - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 19 2.43373 0.44509 2.20523 1.82448 19 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 20 0.70874 2.23169 1.26747 2.12995 20 a - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 21 2.23256 2.63635 0.29269 2.59202 21 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 22 2.43372 1.33643 2.14682 0.62988 22 U - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 23 2.42426 1.52018 2.09532 0.56255 23 U - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 24 1.99566 2.52831 0.36273 2.42470 24 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 25 2.17379 0.40915 2.72472 1.85487 25 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 26 2.17379 0.40915 2.72472 1.85487 26 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 27 2.09629 2.15268 2.58468 0.37761 27 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 28 0.48113 2.36115 1.88928 1.99197 28 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 29 2.65038 0.40696 2.34838 1.78272 29 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 30 0.64330 2.26742 1.35639 2.17794 30 A - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 31 1.79770 2.31365 0.47282 2.18769 31 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 32 2.81004 0.34137 2.46196 1.93981 32 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 33 2.34859 1.54152 2.04266 0.57847 33 U - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 34 2.06324 2.36206 0.39023 2.28446 34 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 35 0.29131 2.67390 2.45444 2.32461 35 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 36 1.93373 1.88311 2.42906 0.48588 36 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 37 2.09976 2.87883 0.30760 2.45216 37 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 38 0.29131 2.67390 2.45444 2.32461 38 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 39 2.09976 2.87883 0.30760 2.45216 39 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 40 2.17379 0.40915 2.72472 1.85487 40 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 41 2.09629 2.15268 2.58468 0.37761 41 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 42 2.17379 0.40915 2.72472 1.85487 42 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 43 2.48591 0.48475 2.22964 1.64335 43 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 44 0.66105 2.15526 1.40375 2.10255 44 A - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 45 2.21578 2.62235 0.29866 2.57066 45 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 46 2.32823 1.42466 2.08167 0.62135 46 U - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 47 0.72202 1.88963 1.54942 1.89225 47 a - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 48 0.29131 2.67390 2.45444 2.32461 48 A - - - + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 49 2.09976 2.87883 0.30760 2.45216 49 G - 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- ) + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 122 1.03997 2.23062 0.97773 1.81455 130 g - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 123 0.83295 1.48589 2.03402 1.56961 131 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 124 0.94972 1.80591 1.99747 1.16108 132 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.05453 3.62935 3.62935 1.46634 0.26236 1.09861 0.40547 + 125 0.84573 1.69167 1.73001 1.56417 133 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.02763 3.60246 * 1.46634 0.26236 0.00000 * +// +INFERNAL1/a [1.1 | October 2013] +NAME Hammerhead_II +ACC RF02276 +STATES 210 +NODES 56 +CLEN 67 +W 124 +ALPH RNA +RF no +CONS yes +MAP yes +DATE Thu Feb 20 19:56:18 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +PBEGIN 0.05 +PEND 0.05 +WBETA 1e-07 +QDBBETA1 1e-07 +QDBBETA2 1e-15 +N2OMEGA 1.52588e-05 +N3OMEGA 1.52588e-05 +ELSELF -0.08926734 +NSEQ 24 +EFFN 6.688477 +CKSUM 4291876430 +NULL 0.000 0.000 0.000 0.000 +GA 37.00 +TC 37.20 +NC 36.90 +EFP7GF -13.8733 0.71896 +ECMLC 0.62082 -6.61527 2.51165 1600000 346727 0.003461 +ECMGC 0.39165 -17.92510 -4.69636 1600000 71150 0.005622 +ECMLI 0.59885 -5.46981 3.52027 1600000 261397 0.004591 +ECMGI 0.40082 -14.89113 -2.31008 1600000 61958 0.006456 +CM + [ ROOT 0 ] - - - - - - + S 0 -1 0 1 4 0 1 124 193 -8.182 -8.389 -0.022 -6.803 + IL 1 1 2 1 4 3 29 126 195 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 2 2 3 2 3 3 29 126 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 1 ] 1 - A - - - + ML 3 2 3 5 3 3 29 124 193 -9.474 -0.009 -7.792 1.126 -0.944 -0.736 -0.519 + D 4 2 3 5 3 0 24 122 191 -5.620 -0.734 -1.403 + IL 5 5 3 5 3 2 27 124 193 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 2 ] - 81 - g - - + MR 6 5 3 8 3 3 28 123 192 -9.474 -0.009 -7.792 0.250 -0.263 0.358 -0.523 + D 7 5 3 8 3 0 22 121 190 -6.390 -1.568 -0.620 + IR 8 8 3 8 3 2 27 123 192 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 3 ] - 80 - a - - + MR 9 8 3 11 3 3 27 122 191 -9.474 -0.009 -7.792 0.946 -0.837 0.098 -1.173 + D 10 8 3 11 3 0 21 120 189 -6.390 -1.568 -0.620 + IR 11 11 3 11 3 2 26 122 191 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 4 ] - 79 - A - - + MR 12 11 3 14 3 3 26 121 190 -9.474 -0.009 -7.792 1.395 -1.066 -1.183 -1.147 + D 13 11 3 14 3 0 20 119 188 -6.390 -1.568 -0.620 + IR 14 14 3 14 3 1 25 121 190 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 5 ] - 78 - a - - + MR 15 14 3 17 3 2 25 120 189 -9.474 -0.009 -7.792 0.695 -0.286 -0.177 -0.564 + D 16 14 3 17 3 0 19 118 187 -6.390 -1.568 -0.620 + IR 17 17 3 17 3 1 24 120 189 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 6 ] - 77 - C - - + MR 18 17 3 20 3 2 24 119 188 -9.474 -0.009 -7.792 -0.986 1.194 -1.687 -0.157 + D 19 17 3 20 3 0 18 117 186 -6.390 -1.568 -0.620 + IR 20 20 3 20 3 1 23 119 188 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 7 ] - 76 - C - - + MR 21 20 3 23 3 2 23 118 187 -9.474 -0.009 -7.792 -0.429 1.463 -2.895 -1.452 + D 22 20 3 23 3 0 18 116 185 -6.390 -1.568 -0.620 + IR 23 23 3 23 3 1 22 118 187 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 8 ] - 75 - G - - + MR 24 23 3 26 3 2 22 117 186 -9.474 -0.009 -7.792 -2.018 -4.161 1.854 -3.600 + D 25 23 3 26 3 0 17 115 184 -6.390 -1.568 -0.620 + IR 26 26 3 26 3 1 21 117 186 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 9 ] - 74 - A - - + MR 27 26 3 29 5 1 21 116 185 -8.161 -0.019 -7.976 -8.188 -9.080 1.943 -4.572 -4.036 -4.290 + D 28 26 3 29 5 0 16 114 183 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 29 29 3 29 5 1 19 116 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 10 ] 2 73 g c - - + MP 30 29 3 34 6 2 20 115 184 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -2.873 1.113 -3.001 0.720 -3.187 -1.694 0.446 -3.393 -3.093 2.292 -3.559 -0.568 0.244 1.280 -1.183 -2.157 + ML 31 29 3 34 6 1 17 113 182 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 32 29 3 34 6 1 16 113 182 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 33 29 3 34 6 0 13 110 179 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 34 34 5 34 6 1 18 114 183 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 35 35 6 35 5 1 18 114 183 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 11 ] 3 72 G G - - + MP 36 35 6 40 4 2 19 113 182 -8.182 -1.837 -0.499 -6.803 -5.880 -5.839 -5.307 -2.092 -3.773 -5.557 2.064 -4.630 -5.363 -2.122 3.309 -3.814 -0.472 -5.847 -1.471 -4.187 + ML 37 35 6 40 4 1 16 112 181 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 38 35 6 40 4 1 14 111 180 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 39 35 6 40 4 0 13 110 178 -4.568 -4.250 -2.265 -0.520 + IL 40 40 5 40 4 1 17 113 182 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 41 41 6 41 3 1 18 112 181 -1.389 -0.735 -5.862 0.000 0.000 0.000 0.000 + [ MATL 12 ] 4 - C - - - + ML 42 41 6 44 3 1 16 111 179 -9.137 -0.009 -7.791 -4.221 1.930 -4.871 -3.293 + D 43 41 6 44 3 0 12 108 177 -6.174 -1.687 -0.566 + IL 44 44 3 44 3 1 16 111 180 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 13 ] 5 - G - - - + ML 45 44 3 47 3 1 15 110 178 -9.137 -0.009 -7.791 -3.671 -5.128 1.943 -4.410 + D 46 44 3 47 3 0 11 107 176 -6.174 -1.687 -0.566 + IL 47 47 3 47 3 1 15 110 179 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 14 ] 6 - A - - - + ML 48 47 3 50 3 1 15 109 177 -9.137 -0.009 -7.791 1.943 -4.572 -4.036 -4.290 + D 49 47 3 50 3 0 11 107 175 -6.174 -1.687 -0.566 + IL 50 50 3 50 3 1 14 109 178 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 15 ] 7 - A - - - + ML 51 50 3 53 3 1 14 108 176 -9.474 -0.009 -7.792 1.943 -4.572 -4.036 -4.290 + D 52 50 3 53 3 0 10 106 175 -5.620 -0.734 -1.403 + IL 53 53 3 53 3 1 13 108 177 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 16 ] - 69 - A - - + MR 54 53 3 56 3 1 13 107 175 -9.474 -0.009 -7.792 1.943 -4.572 -4.036 -4.290 + D 55 53 3 56 3 0 9 104 173 -6.390 -1.568 -0.620 + IR 56 56 3 56 3 1 12 107 176 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 17 ] - 68 - G - - + MR 57 56 3 59 3 1 12 106 174 -9.474 -0.009 -7.792 -3.671 -5.128 1.943 -4.410 + D 58 56 3 59 3 0 8 103 172 -6.390 -1.568 -0.620 + IR 59 59 3 59 3 1 11 106 175 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 18 ] - 67 - U - - + MR 60 59 3 62 3 1 11 105 173 -9.474 -0.009 -7.792 -2.042 0.145 -2.867 1.330 + D 61 59 3 62 3 0 8 102 171 -6.390 -1.568 -0.620 + IR 62 62 3 62 3 1 11 105 174 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 19 ] - 66 - A - - + MR 63 62 3 65 3 1 10 104 172 -9.474 -0.009 -7.792 1.943 -4.572 -4.036 -4.290 + D 64 62 3 65 3 0 7 102 170 -6.390 -1.568 -0.620 + IR 65 65 3 65 3 1 10 104 173 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 20 ] - 65 - G - - + MR 66 65 3 68 3 1 9 103 171 -9.474 -0.009 -7.792 -3.671 -5.128 1.943 -4.410 + D 67 65 3 68 3 0 6 101 170 -6.390 -1.568 -0.620 + IR 68 68 3 68 3 1 9 103 172 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 21 ] - 64 - U - - + MR 69 68 3 71 3 1 8 102 170 -9.474 -0.009 -7.792 -3.607 -3.287 -4.397 1.914 + D 70 68 3 71 3 0 6 100 169 -6.390 -1.568 -0.620 + IR 71 71 3 71 3 1 8 102 171 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 22 ] - 63 - C - - + MR 72 71 3 74 2 1 7 101 169 -9.683 -0.002 -4.221 1.930 -4.871 -3.293 + D 73 71 3 74 2 0 6 100 169 -4.432 -0.068 + IR 74 74 3 74 2 1 7 101 170 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ BIF 23 ] - - - - - - + B 75 74 3 76 138 0 6 100 168 + [ BEGL 24 ] - - - - - - + S 76 75 1 77 4 0 0 77 145 -0.026 -7.584 -6.992 -7.632 + [ MATP 25 ] 8 37 A U - - + MP 77 76 1 81 6 2 2 77 145 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -5.223 -0.503 -5.208 3.762 -7.017 -8.009 -2.589 -5.236 -5.012 -0.479 -5.657 -1.246 -2.676 -6.491 -4.448 -3.961 + ML 78 76 1 81 6 1 1 74 143 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 79 76 1 81 6 1 1 74 143 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 80 76 1 81 6 0 0 70 139 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 81 81 5 81 6 1 1 76 145 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 82 82 6 82 5 1 1 76 144 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 26 ] 9 36 C G - - + MP 83 82 6 87 6 2 2 75 143 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -5.794 -5.869 -5.288 -2.023 -3.770 -5.552 3.732 -0.472 -5.359 -1.929 -5.539 -3.926 -0.360 -5.751 -1.469 -4.165 + ML 84 82 6 87 6 1 1 73 141 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 85 82 6 87 6 1 1 72 141 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 86 82 6 87 6 0 0 68 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 87 87 5 87 6 1 1 74 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 88 88 6 88 5 1 1 74 142 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 27 ] 10 35 g c - - + MP 89 88 6 93 6 2 2 73 141 -9.707 -4.620 -0.072 -8.423 -8.703 -9.098 -3.876 -3.043 -3.847 1.160 -3.828 -4.591 2.184 -4.056 -3.994 2.545 -4.412 -0.061 0.348 -3.872 -1.331 -2.750 + ML 90 88 6 93 6 1 1 71 139 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 91 88 6 93 6 1 1 70 139 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 92 88 6 93 6 0 0 67 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 93 93 5 93 6 1 1 72 141 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 94 94 6 94 5 1 1 72 140 -2.848 -0.349 -6.359 -4.526 -5.632 0.000 0.000 0.000 0.000 + [ MATP 28 ] 11 33 c g - - + MP 95 94 6 99 6 2 2 71 139 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -3.361 -3.032 -3.439 0.520 -3.140 -4.239 2.511 -3.545 -3.493 2.141 -1.123 -0.237 0.741 -3.544 -0.860 -2.421 + ML 96 94 6 99 6 1 1 69 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 97 94 6 99 6 1 1 68 137 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 98 94 6 99 6 0 0 65 134 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 99 99 5 99 6 1 1 70 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 100 100 6 100 5 1 1 70 138 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 29 ] 12 32 c g - - + MP 101 100 6 105 6 2 2 69 137 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -2.530 -2.652 -2.695 0.842 -1.309 -1.251 2.429 -2.868 -2.726 1.025 -3.287 -1.035 1.614 -2.843 0.157 -1.824 + ML 102 100 6 105 6 1 1 67 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 103 100 6 105 6 1 1 66 135 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 104 100 6 105 6 0 0 64 133 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 105 105 5 105 6 1 1 68 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 106 106 6 106 5 1 1 68 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 30 ] 13 31 C G - - + MP 107 106 6 111 4 2 2 67 135 -8.182 -8.389 -0.022 -6.803 -4.304 -4.178 -4.245 -0.405 -3.289 -1.391 3.276 -3.954 -4.240 1.269 -4.671 -2.095 0.520 -4.466 -0.941 -3.105 + ML 108 106 6 111 4 1 1 66 134 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 109 106 6 111 4 1 1 64 133 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 110 106 6 111 4 0 0 63 132 -4.568 -4.250 -2.265 -0.520 + IL 111 111 5 111 4 1 1 67 135 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 112 112 6 112 3 1 1 66 135 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 31 ] 14 - c - - - + ML 113 112 6 115 3 1 1 65 133 -9.137 -0.009 -7.791 -1.176 0.964 -0.435 -0.207 + D 114 112 6 115 3 0 0 62 130 -6.174 -1.687 -0.566 + IL 115 115 3 115 3 1 1 65 134 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 32 ] 15 - c - - - + ML 116 115 3 118 3 1 1 64 132 -9.137 -0.062 -4.635 0.067 0.278 -0.618 0.123 + D 117 115 3 118 3 0 0 60 129 -6.174 -1.687 -0.566 + IL 118 118 3 118 3 1 1 64 133 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 33 ] 16 - g - - - + ML 119 118 3 121 3 1 1 63 132 -9.085 -0.009 -7.739 -0.152 0.201 0.268 -0.422 + D 120 118 3 121 3 0 0 56 125 -6.977 -2.490 -0.297 + IL 121 121 3 121 3 1 1 63 132 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 34 ] 17 - c - - - + ML 122 121 3 124 3 1 1 62 131 -1.504 -1.782 -1.488 0.163 0.384 -0.825 0.015 + D 123 121 3 124 3 0 0 47 115 -6.977 -2.490 -0.297 + IL 124 124 3 124 3 1 1 65 134 -0.386 -2.125 -7.497 0.000 0.000 0.000 0.000 + [ MATL 35 ] 27 - u - - - + ML 125 124 3 127 3 1 1 16 34 -8.459 -0.015 -7.113 -0.244 -0.355 0.240 0.254 + D 126 124 3 127 3 0 0 14 33 -9.315 -0.931 -1.077 + IL 127 127 3 127 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 36 ] 28 - u - - - + ML 128 127 3 130 3 1 1 14 33 -8.872 -0.011 -7.526 -0.069 0.058 -0.135 0.132 + D 129 127 3 130 3 0 0 13 32 -8.346 -0.240 -2.738 + IL 130 130 3 130 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 37 ] 29 - g - - - + ML 131 130 3 133 3 1 1 12 31 -9.137 -0.009 -7.791 -0.092 -1.123 0.652 0.045 + D 132 130 3 133 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 133 133 3 133 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 38 ] 30 - g - - - + ML 134 133 3 136 2 1 1 1 1 * 0.000 -0.247 -0.667 0.925 -0.670 + D 135 133 3 136 2 0 0 0 0 * 0.000 + IL 136 136 3 136 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 39 ] - - - - - - + E 137 136 3 -1 0 0 0 0 0 + [ BEGR 40 ] - - - - - - + S 138 75 1 139 3 0 0 36 55 -9.137 -0.009 -7.791 + IL 139 139 2 139 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 41 ] 38 - C - - - + ML 140 139 2 142 5 1 1 36 55 -8.161 -0.123 -7.976 -3.782 -9.080 -3.310 1.812 -4.113 -1.600 + D 141 139 2 142 5 0 0 35 53 -4.959 -0.803 -4.221 -2.596 -2.508 + IL 142 142 3 142 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 + [ MATP 42 ] 39 62 u a - - + MP 143 142 3 147 6 2 2 35 54 -9.641 -9.580 -0.015 -8.357 -8.636 -9.031 -2.621 -2.655 -2.772 1.527 -2.521 -3.613 1.500 -2.949 -0.990 1.268 -3.362 -0.938 2.255 -2.911 -0.459 -1.884 + ML 144 142 3 147 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 145 142 3 147 6 1 1 34 52 -7.827 -6.556 -0.684 -6.535 -1.668 -4.748 0.317 0.226 -0.785 0.006 + D 146 142 3 147 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 147 147 5 147 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 148 148 6 148 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 43 ] 40 61 g c - - + MP 149 148 6 153 6 2 2 33 52 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -1.908 -1.999 -2.104 1.597 -2.114 -2.919 1.086 -1.140 -2.163 1.605 -1.266 0.516 1.154 -1.467 0.258 -1.354 + ML 150 148 6 153 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 151 148 6 153 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 152 148 6 153 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 153 153 5 153 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 154 154 6 154 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 44 ] 41 60 C G - - + MP 155 154 6 159 6 2 2 31 50 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -4.993 -5.022 -4.745 -1.224 -3.475 -5.199 3.381 -4.260 -4.766 -1.092 -1.292 -3.046 0.114 -5.076 1.411 -3.612 + ML 156 154 6 159 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 157 154 6 159 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 158 154 6 159 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 159 159 5 159 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 160 160 6 160 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 45 ] 42 59 C G - - + MP 161 160 6 165 6 2 2 29 48 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -4.084 -4.030 -4.076 -0.245 -3.156 -1.640 3.227 -3.806 -4.050 0.350 -4.517 -1.972 1.164 -4.288 0.079 -2.933 + ML 162 160 6 165 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 163 160 6 165 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 164 160 6 165 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 165 165 5 165 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 166 166 6 166 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 46 ] 43 58 g c - - + MP 167 166 6 171 6 2 2 27 46 -9.707 -5.150 -0.054 -8.423 -8.703 -9.098 -2.640 -2.486 -1.078 0.782 -2.760 -2.132 2.030 -3.084 -2.872 2.342 -3.393 -0.324 0.719 -2.860 -0.426 -1.921 + ML 168 166 6 171 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 169 166 6 171 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 170 166 6 171 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 171 171 5 171 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 172 172 6 172 5 1 1 26 45 -2.722 -0.385 -6.234 -4.401 -5.507 0.000 0.000 0.000 0.000 + [ MATP 47 ] 44 56 g c - - + MP 173 172 6 177 6 2 2 25 44 -9.707 -9.647 -0.058 -8.423 -4.960 -9.098 -2.977 -2.435 -3.047 1.203 -3.376 -0.015 0.417 -1.252 -3.230 2.742 -3.675 0.467 0.220 -1.459 -1.265 -2.181 + ML 174 172 6 177 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 175 172 6 177 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 176 172 6 177 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 177 177 5 177 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 178 178 6 178 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 48 ] 45 55 G C - - + MP 179 178 6 183 4 2 2 23 42 -1.949 -9.203 -0.475 -5.656 -4.672 -3.183 -4.580 0.883 -5.462 -4.894 0.191 -5.121 -4.650 3.496 -4.935 -0.841 -0.920 -4.352 -2.641 -3.511 + ML 180 178 6 183 4 1 1 22 41 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 + MR 181 178 6 183 4 1 1 22 40 -5.215 -13.642 -0.167 -3.598 -0.239 0.714 -0.957 -0.004 + D 182 178 6 183 4 0 0 20 39 -12.737 -14.007 -2.036 -0.404 + IL 183 183 5 183 4 1 1 22 40 -4.356 -5.859 -0.183 -4.238 0.000 0.000 0.000 0.000 + IR 184 184 6 184 3 1 1 23 41 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 + [ MATR 49 ] - 54 - G - - + MR 185 184 6 187 5 1 1 21 39 -8.161 -0.019 -7.976 -8.188 -9.080 -0.683 -1.429 1.293 -0.848 + D 186 184 6 187 5 0 0 20 38 -5.352 -0.707 -2.978 -4.409 -2.404 + IR 187 187 3 187 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 50 ] 47 53 c g - - + MP 188 187 3 192 6 2 2 20 38 -9.707 -9.647 -0.014 -8.423 -8.703 -9.098 -1.826 -1.039 -1.040 0.872 -1.994 -2.872 2.098 -1.257 -2.086 1.224 -1.184 -0.695 1.063 -2.162 0.561 -1.282 + ML 189 187 3 192 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 + MR 190 187 3 192 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 + D 191 187 3 192 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 + IL 192 192 5 192 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 + IR 193 193 6 193 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 + [ MATP 51 ] 48 52 g c - - + MP 194 193 6 198 4 2 2 18 36 -8.182 -8.389 -0.022 -6.803 -4.155 -2.941 -4.207 1.545 -5.090 -5.040 -0.585 -0.835 -4.210 2.419 -4.596 2.380 -0.835 -4.324 -2.509 -3.079 + ML 195 193 6 198 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 + MR 196 193 6 198 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 + D 197 193 6 198 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 + IL 198 198 5 198 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 + IR 199 199 6 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 52 ] 49 - U - - - + ML 200 199 6 202 3 1 1 14 32 -9.137 -0.009 -7.791 -2.478 -1.076 -3.232 1.696 + D 201 199 6 202 3 0 0 15 33 -6.174 -1.687 -0.566 + IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 53 ] 50 - G - - - + ML 203 202 3 205 3 1 1 12 31 -9.137 -0.009 -7.791 -0.976 -1.947 1.590 -2.166 + D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 + IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 + [ MATL 54 ] 51 - G - - - + ML 206 205 3 208 2 1 1 1 1 * 0.000 -1.130 -3.575 1.740 -3.067 + D 207 205 3 208 2 0 0 0 0 * 0.000 + IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 + [ END 55 ] - - - - - - + E 209 208 3 -1 0 0 0 0 0 +// +HMMER3/f [i1.1 | October 2013] +NAME Hammerhead_II +ACC RF02276 +LENG 67 +MAXL 149 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Thu Feb 20 19:56:18 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM +NSEQ 24 +EFFN 13.543945 +CKSUM 4291876430 +STATS LOCAL MSV -7.8588 0.71896 +STATS LOCAL VITERBI -8.8049 0.71896 +STATS LOCAL FORWARD -3.3776 0.71896 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.53648 1.27419 1.10332 1.75193 + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 0.00000 * + 1 0.51779 2.14969 1.95783 1.92087 1 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 2 1.23372 2.86506 1.07416 1.17045 2 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 3 4.58369 1.39888 0.35324 3.20648 3 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 4 5.05323 0.02311 5.39549 4.42941 4 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 5 4.64450 5.75634 0.01873 5.15426 5 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 6 0.01670 5.42928 5.02297 5.18612 6 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 7 0.01670 5.42928 5.02297 5.18612 7 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 8 0.06526 4.95123 3.08341 4.57572 8 A - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 9 4.64986 0.06387 4.55537 3.17480 9 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 10 1.93989 1.11484 0.77433 2.69858 10 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 11 2.73084 0.81634 0.90276 2.43792 11 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 12 2.19942 0.76308 1.90694 1.29328 12 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 13 3.97621 0.26249 1.86614 2.85791 13 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 14 2.78999 0.58298 1.64387 1.67604 14 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 15 1.37514 1.10748 1.84047 1.35455 15 c - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.05454 4.90265 3.08669 1.46634 0.26236 1.09861 0.40547 + 16 1.60089 1.13974 1.10872 1.90784 16 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01556 4.86368 4.86368 1.46634 0.26236 2.09765 0.13096 + 17 1.28466 1.02177 2.03221 1.45992 17 c - - _ + 1.38629 1.38629 1.38629 1.38629 + 1.46510 0.95745 0.95432 1.64920 0.21345 2.09765 0.13096 + 18 1.71626 1.62868 1.10754 1.22518 27 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02512 4.38990 4.38990 1.46634 0.26236 0.61583 0.77695 + 19 1.51923 1.27163 1.42697 1.34434 28 c - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01828 4.70439 4.70439 1.46634 0.26236 0.07633 2.61064 + 20 1.52758 2.36346 0.82956 1.37593 29 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 21 1.67246 1.85807 0.62873 2.09580 30 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 22 3.12803 1.70239 0.28772 3.73061 31 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 23 1.46381 1.79778 0.74751 2.04456 32 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 24 2.66467 1.15470 0.69905 2.13564 33 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.08752 2.57208 4.90265 0.18428 1.78203 1.09861 0.40547 + 25 2.94396 0.90215 1.07861 1.60157 35 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 26 3.47485 4.67916 0.11268 2.71338 36 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 27 4.68250 2.48451 4.66528 0.10763 37 U - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 28 4.44634 0.08887 4.90503 2.71953 38 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.09845 4.90265 2.44952 1.46634 0.26236 1.09861 0.40547 + 29 1.52746 1.80501 1.58369 0.88377 39 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01626 4.82046 4.82046 1.46634 0.26236 0.15875 1.91873 + 30 1.41197 1.88327 1.01240 1.42338 40 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 31 4.49367 0.31616 3.16684 1.52444 41 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 32 3.46231 0.32484 2.68143 1.72860 42 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 33 2.05061 1.14113 0.83784 2.12659 43 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 34 1.93808 1.73588 0.52116 2.45408 44 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.06920 4.90265 2.82286 1.46634 0.26236 1.09861 0.40547 + 35 2.22599 2.67341 0.23152 3.51674 45 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.34344 1.26287 4.84924 0.05451 2.93659 0.22307 1.60972 + 36 1.74499 1.01522 1.48775 1.43906 47 c - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 37 1.68828 2.76886 0.31372 3.83009 48 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 38 3.79604 2.19895 4.31136 0.15876 49 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 39 2.22541 2.83492 0.22371 3.38997 50 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 40 2.25526 4.55266 0.13981 4.19352 51 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 41 4.06878 1.16374 3.87401 0.43107 52 U - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 42 1.96744 1.59865 0.71740 1.77196 53 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 43 2.05847 2.54076 0.39109 2.14365 54 G - - - + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 44 3.57381 0.26288 2.59975 2.04929 55 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 45 3.03472 0.48166 2.74566 1.30952 56 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.06395 2.90910 4.90265 0.25318 1.49756 1.09861 0.40547 + 46 2.48566 0.89872 0.99191 1.97494 58 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 47 2.13617 2.43801 0.28287 3.19563 59 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 48 3.31779 4.38460 0.06727 4.11340 60 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 49 1.85426 1.37282 1.50755 0.99808 61 u - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 50 0.88929 1.78542 1.68621 1.44347 62 a - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 51 5.05323 0.02311 5.39549 4.42941 63 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 52 4.78480 4.48556 5.35375 0.02466 64 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 53 4.64450 5.75634 0.01873 5.15426 65 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 54 0.01670 5.42928 5.02297 5.18612 66 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 55 3.60942 1.24185 4.20502 0.40173 67 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 56 4.64450 5.75634 0.01873 5.15426 68 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 57 0.01670 5.42928 5.02297 5.18612 69 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.35908 1.22331 4.90265 0.51588 0.90876 1.09861 0.40547 + 58 3.52173 4.67249 0.05344 4.33237 72 G - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 59 3.70014 0.13807 3.35799 2.66739 73 C - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 60 0.01670 5.42928 5.02297 5.18612 74 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 61 2.96959 5.02019 0.07051 4.59033 75 G - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 62 1.71038 0.26874 4.29103 3.19012 76 C - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 63 2.32511 0.45172 2.74721 1.60152 77 C - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 64 0.84725 1.54111 1.47935 2.04422 78 a - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 65 0.32766 2.21587 2.36388 2.57341 79 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 66 0.64240 2.02512 1.25557 2.86334 80 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.01497 4.90265 4.90265 1.46634 0.26236 1.09861 0.40547 + 67 1.22218 1.51879 1.04805 1.99647 81 g - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00751 4.89520 * 1.46634 0.26236 0.00000 * +// diff -r 000000000000 -r fccb17c9e7ef test-data/hammerheadClan.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/hammerheadClan.hmm Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,362 @@ +HMMER3/f [i1.1 | October 2013] +NAME Hammerhead_1 +ACC RF00163 +LENG 46 +MAXL 1024 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Mon Apr 7 16:26:36 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +NSEQ 29 +EFFN 29.000000 +CKSUM 822789652 +STATS LOCAL MSV -7.2434 0.72420 +STATS LOCAL VITERBI -8.0368 0.72420 +STATS LOCAL FORWARD -3.9333 0.72420 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.23160 1.40725 1.36162 1.57448 + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 0.00000 * + 1 1.05150 0.79288 2.10623 2.57240 1 c - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 2 3.57334 2.35748 2.81121 0.20194 2 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 3 2.13788 0.94667 3.09051 0.80165 3 u - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.05509 5.74300 2.98777 1.46634 0.26236 1.09861 0.40547 + 4 4.19719 0.98552 3.95023 0.52346 4 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00675 5.69466 5.69466 1.46634 0.26236 0.11973 2.18181 + 5 1.10187 0.99383 2.32825 1.60881 5 c - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 6 1.81855 1.02498 1.03243 2.09726 6 c - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 7 2.32168 0.15763 4.96854 3.19967 7 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 8 2.51100 2.68275 4.56816 0.17428 8 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 9 5.32753 6.52376 0.00925 5.84922 9 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 10 0.03510 5.34451 5.30287 3.69926 10 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 11 0.78913 1.06413 2.18044 2.43336 11 a - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 12 5.05359 3.99671 0.02921 5.51634 12 G - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 13 0.12729 3.90906 4.06325 2.49775 13 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 14 3.40084 5.71124 0.04079 5.70842 14 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 15 0.87362 3.64062 4.79136 0.60144 15 U - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 16 5.35572 0.12161 3.01897 2.79792 16 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 17 5.34129 0.65767 0.83205 3.17017 17 C - 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- ) + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 42 1.70930 2.45034 0.94884 1.06260 120 g - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 43 0.77268 4.06315 0.76144 2.91805 121 g - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 44 0.93066 2.41528 1.00913 1.88500 122 a - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 45 0.10070 5.28008 2.47777 4.99427 123 A - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00643 5.74300 5.74300 1.46634 0.26236 1.09861 0.40547 + 46 2.80174 2.03993 0.87783 0.93249 124 g - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00322 5.73979 * 1.46634 0.26236 0.00000 * +// +HMMER3/f [i1.1 | October 2013] +NAME Hammerhead_3 +ACC RF00008 +LENG 58 +MAXL 394 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Wed Apr 2 10:16:51 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +NSEQ 82 +EFFN 37.363953 +CKSUM 3010811993 +STATS LOCAL MSV -7.6645 0.71923 +STATS LOCAL VITERBI -8.4297 0.71923 +STATS LOCAL FORWARD -4.3750 0.71923 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.32643 1.47009 1.25645 1.51409 + 1.38629 1.38629 1.38629 1.38629 + 0.43619 6.09683 1.04625 1.46634 0.26236 0.00000 * + 1 1.82145 0.86676 1.49265 1.64443 1 c - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00694 5.66758 5.66758 1.46634 0.26236 0.27423 1.42778 + 2 0.83552 1.66404 2.70673 1.17046 2 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 3 1.15542 1.18053 2.06288 1.38280 3 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 4 1.31675 0.78057 1.36254 4.02643 4 c - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 5 0.28665 2.12273 3.57662 2.28720 5 A - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 6 3.33415 5.75054 0.04308 5.70299 6 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 7 6.47594 6.12952 6.71375 0.00494 7 U - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00491 6.01256 6.01256 1.46634 0.26236 3.66156 0.02603 + 8 2.77356 0.09503 5.28751 3.76519 8 C - - , + 1.38629 1.38629 1.38629 1.38629 + 0.15169 3.77726 2.13826 0.20170 1.70013 0.05275 2.96842 + 9 2.86405 4.59505 0.76223 0.76306 10 g - 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- ) + 1.38629 1.38629 1.38629 1.38629 + 0.36397 6.07598 1.19472 1.46634 0.26236 2.49906 0.08573 + 58 2.20011 1.23892 0.74080 2.09739 85 g - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00330 5.71531 * 1.46634 0.26236 0.00000 * +// diff -r 000000000000 -r fccb17c9e7ef test-data/input.cmcompare --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.cmcompare Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,1 @@ +Hammerhead_HH10 Hammerhead_II -2.968 -0.922 GCGCCCCCGCGGGCGC ((((((....)))))) ((((((....)))))) [26,27,28,29,30,31,32,33,34,35,36] [25,26,27,28,29,30,31,32,33,34,35,36,37,38,39] diff -r 000000000000 -r fccb17c9e7ef test-data/input.hmmcompare --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/input.hmmcompare Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,1 @@ +Hammerhead_1 Hammerhead_3 6.168 5.244 GUCCCAGUAAUAGGAC [17,18,19,20,21,22,23,23,24,25,26,27,28] [36,37,38,39,40,41,42,43,44,45,46,47,48] diff -r 000000000000 -r fccb17c9e7ef test-data/tRNA.hmm --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tRNA.hmm Fri Oct 20 04:31:43 2017 -0400 @@ -0,0 +1,238 @@ +HMMER3/f [i1.1 | October 2013] +NAME tRNA +ACC RF00005 +LENG 71 +MAXL 253 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Tue Mar 18 15:30:04 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +NSEQ 954 +EFFN 559.992432 +CKSUM 1403477983 +STATS LOCAL MSV -9.0828 0.73401 +STATS LOCAL VITERBI -9.6771 0.73401 +STATS LOCAL FORWARD -2.6167 0.73401 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.34376 1.54626 1.34829 1.32272 + 1.38629 1.38629 1.38629 1.38629 + 0.01089 9.16555 4.53501 1.46634 0.26236 0.00000 * + 1 1.77738 2.48413 0.40741 2.49918 1 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.15487 9.15487 1.46634 0.26236 0.01931 3.95671 + 2 1.70723 1.28195 0.88318 2.05828 2 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 3 1.16771 1.50075 1.31207 1.62608 3 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 4 1.45971 1.75541 0.94997 1.56969 4 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 5 0.99705 1.64839 1.41564 1.63013 5 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 6 1.62605 1.74147 1.35530 0.99381 6 u - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 7 0.91594 3.16623 1.01357 1.63590 7 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 8 2.66516 4.88171 3.01992 0.13465 8 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.03342 3.68933 4.84310 0.00835 4.78975 1.09861 0.40547 + 9 0.58939 3.25595 1.00776 3.17602 10 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.02924 3.55044 9.15774 0.00733 4.92001 0.02619 3.65549 + 10 2.41169 2.38509 0.28093 2.76190 12 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 11 3.26023 0.54810 2.54667 1.18668 13 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 12 2.15431 1.47701 1.82444 0.70443 14 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 13 1.60140 1.50019 1.39889 1.11344 15 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00210 9.16555 6.21942 1.46634 0.26236 1.09861 0.40547 + 14 0.13193 5.26257 3.22617 2.54198 16 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00916 9.16366 4.70900 1.46634 0.26236 3.04606 0.04871 + 15 0.89567 3.14554 0.79030 2.35479 17 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.17992 9.15472 1.80452 1.46634 0.26236 4.66400 0.00947 + 16 1.81826 1.59646 3.52093 0.50169 18 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.48849 1.02501 3.58788 0.29781 1.35652 0.17366 1.83622 + 17 2.18421 3.21803 0.23359 2.88757 22 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01313 9.11400 4.34765 1.46634 0.26236 6.18099 0.00207 + 18 2.72437 3.05446 0.23471 2.33861 23 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.16612 9.10109 1.87766 1.46634 0.26236 6.39686 0.00167 + 19 2.54081 1.97700 3.62026 0.27980 24 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.84547 0.56328 6.64183 0.37133 1.17060 0.01129 4.48982 + 20 0.20389 3.95681 2.45766 2.52965 28 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16251 9.16251 1.46634 0.26236 0.06450 2.77317 + 21 0.67070 3.60549 1.12770 1.98271 29 A - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00101 9.16555 7.00724 1.46634 0.26236 1.09861 0.40547 + 22 0.74509 1.80409 1.36106 2.26054 30 a - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16475 9.16475 1.46634 0.26236 0.20786 1.67302 + 23 1.27379 2.51619 0.51274 3.20372 31 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 24 2.96340 0.43847 2.29770 1.59531 32 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01002 9.16555 4.61878 1.46634 0.26236 1.09861 0.40547 + 25 0.88499 3.59117 0.81932 2.12876 33 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.02263 3.80472 9.15574 0.00946 4.66544 0.02098 3.87461 + 26 1.75309 1.15243 1.97170 0.98974 35 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00979 4.64168 9.16555 0.02155 3.84793 1.09861 0.40547 + 27 1.85437 0.99657 2.35852 0.96826 37 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 28 1.30168 2.18037 0.98968 1.41375 38 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00102 9.16555 6.99298 1.46634 0.26236 1.09861 0.40547 + 29 1.80997 1.88357 0.43335 3.32526 39 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00088 9.16474 7.15852 1.46634 0.26236 0.20520 1.68462 + 30 0.90900 1.72612 1.56959 1.55605 40 a - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16488 9.16488 1.46634 0.26236 0.23822 1.55130 + 31 3.65408 0.50544 4.76325 1.01518 41 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01205 4.43341 9.16555 0.01752 4.05299 1.09861 0.40547 + 32 9.00018 3.83708 9.65323 0.02198 43 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 33 2.93223 1.86700 1.05683 0.81063 44 u - 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- > + 1.38629 1.38629 1.38629 1.38629 + 0.01512 4.62725 5.25418 0.02125 3.86212 1.09861 0.40547 + 42 1.07209 2.65235 1.14499 1.31306 54 a - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16042 9.16042 1.46634 0.26236 0.03925 3.25747 + 43 0.80151 1.95751 2.49068 1.11692 55 a - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00354 9.16555 5.67532 1.46634 0.26236 1.09861 0.40547 + 44 1.18719 3.11026 0.79210 1.62231 56 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.35483 1.22280 5.44788 2.52888 0.08311 0.05920 2.85628 + 45 0.94160 3.32903 0.90358 1.77754 81 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.48754 0.95525 6.76795 0.05391 2.94730 0.04759 3.06879 + 46 2.80272 0.69545 2.93113 0.94890 85 c - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16451 9.16451 1.46634 0.26236 0.16775 1.86801 + 47 1.22469 2.17415 0.63431 2.77834 86 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 48 1.42620 1.32668 1.62225 1.21413 87 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 49 1.18971 2.17674 0.87232 1.80607 88 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01813 4.16800 5.99901 0.01345 4.31515 1.09861 0.40547 + 50 1.54892 3.64681 0.35215 2.84261 90 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05447 9.16317 2.93921 1.46634 0.26236 3.24748 0.03965 + 51 2.91904 3.69075 0.10557 3.85142 91 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01926 9.10892 3.96541 1.46634 0.26236 0.47025 0.98042 + 52 2.58713 3.30063 4.12158 0.13733 92 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01335 4.33098 9.12642 0.01645 4.11544 0.02336 3.76823 + 53 2.73380 3.55136 3.10063 0.14929 94 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00117 9.16487 6.84764 1.46634 0.26236 0.23519 1.56264 + 54 1.91909 0.28976 3.93473 2.46202 95 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00089 9.16459 7.15486 1.46634 0.26236 2.49712 0.08591 + 55 0.86370 3.18439 0.73315 2.87167 96 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02538 3.85434 5.55452 0.00986 4.62431 0.11370 2.23049 + 56 0.10751 3.36842 3.61643 3.20375 98 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02690 9.16179 3.63288 1.46634 0.26236 3.66212 0.02601 + 57 0.67201 2.24039 1.88732 1.46350 99 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.10924 3.26538 2.72866 0.25713 1.48400 3.15055 0.04377 + 58 3.03220 2.08118 4.58750 0.20232 102 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02872 9.06899 3.56869 1.46634 0.26236 0.44699 1.02041 + 59 3.62885 0.09251 4.76246 2.93245 103 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00022 9.10519 9.10519 1.46634 0.26236 0.04490 3.12561 + 60 2.82384 0.36562 3.60560 1.51557 104 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16317 9.16317 1.46634 0.26236 0.08093 2.55433 + 61 1.98165 0.93537 2.03138 1.08305 105 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 62 1.41052 1.88381 1.22158 1.17374 106 u - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01727 4.07376 9.16555 0.01225 4.40843 1.09861 0.40547 + 63 2.92352 0.85192 2.12328 0.91624 108 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01067 4.63067 7.04730 0.02132 3.85875 1.09861 0.40547 + 64 1.64302 1.08197 3.15743 0.85533 110 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16479 9.16479 1.46634 0.26236 0.21550 1.64060 + 65 1.19333 1.55287 1.48082 1.35596 111 a - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 66 1.77201 1.52940 1.50476 0.93835 112 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 67 1.68524 1.08580 1.59640 1.29337 113 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 68 1.70095 1.44882 1.44666 1.05760 114 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 69 2.07909 0.95836 1.28069 1.54370 115 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 70 2.48394 0.54896 2.55295 1.34252 116 C - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.02417 9.16555 3.73919 1.46634 0.26236 1.09861 0.40547 + 71 0.68084 2.78597 1.26674 1.89452 118 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00011 9.14149 * 1.46634 0.26236 0.00000 * +// diff -r 000000000000 -r fccb17c9e7ef test-data/tRNA.pdf Binary file test-data/tRNA.pdf has changed