Mercurial > repos > rnateam > cmsearch_deoverlap

diff cmsearch-deoverlap.xml @ 1:3fd3be28a04c draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmsearch_deoverlap commit a9df96eec1bfb4e4d61926b02e8847babd1187ad-dirty
author rnateam
date Mon, 18 Mar 2024 09:34:56 +0000
parents 54b16c794341
children 874ad23526a0
line wrap: on
line diff
--- a/cmsearch-deoverlap.xml	Sat Aug 19 05:37:02 2023 +0000
+++ b/cmsearch-deoverlap.xml	Mon Mar 18 09:34:56 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="cmsearch_deoverlap" name="CMsearch deoverlap" version="0.08+galaxy0" profile="21.05">
+<tool id="cmsearch_deoverlap" name="CMsearch deoverlap" version="0.08+galaxy1" profile="21.05">
     <description>removes lower scoring overlaps from cmsearch results</description>
     <requirements>
         <requirement type="package" version="5.26">perl</requirement>
@@ -13,10 +13,12 @@
         #end if
         #if $dirty:
             $dirty &&
-            mv *.sort '$matches_sort'
+            sed 's/[:blank:]+/,/g' cmsearch_matches.sort > cmsearch_matches.sort.tabular &&
+            mv cmsearch_matches.sort.tabular '$matches_sort'
         #end if
         &&
-        mv *.deoverlapped '$deoverlapped_matches'
+        sed 's/[:blank:]+/,/g' cmsearch_matches.deoverlapped > cmsearch_matches.deoverlapped.tabular &&
+        mv cmsearch_matches.deoverlapped.tabular '$deoverlapped_matches'
 
     ]]></command>
     <inputs>