# HG changeset patch
# User rnateam
# Date 1520459789 18000
# Node ID 6260e42c7d49ced9da7e662a6035b79eef636405
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/epicseg commit 560df98ab92af885e9d2e909ee8709885e52cbd3
diff -r 000000000000 -r 6260e42c7d49 epicseg.R
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/epicseg.R Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,4 @@
+#!/usr/bin/env Rscript
+
+library(epicseg)
+epicseg:::CLI(args=commandArgs(trailingOnly=TRUE), epicseg:::getProg())
diff -r 000000000000 -r 6260e42c7d49 epicseg.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/epicseg.xml Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,358 @@
+
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+ macros.xml
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diff -r 000000000000 -r 6260e42c7d49 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,15 @@
+
+ 1.0
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+ epicseg
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+ 10.1186/s13059-015-0708-z
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diff -r 000000000000 -r 6260e42c7d49 test-data/chr1.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/chr1.bed Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,1 @@
+chr1 1000000 1500000
diff -r 000000000000 -r 6260e42c7d49 test-data/chr1_h1hesc_h3k27me3.bam
Binary file test-data/chr1_h1hesc_h3k27me3.bam has changed
diff -r 000000000000 -r 6260e42c7d49 test-data/chr1_h1hesc_h3k4me1.bam
Binary file test-data/chr1_h1hesc_h3k4me1.bam has changed
diff -r 000000000000 -r 6260e42c7d49 test-data/chr1_h1hesc_h3k4me1_rep2.bam
Binary file test-data/chr1_h1hesc_h3k4me1_rep2.bam has changed
diff -r 000000000000 -r 6260e42c7d49 test-data/chr1_h1hesc_h3k4me3.bam
Binary file test-data/chr1_h1hesc_h3k4me3.bam has changed
diff -r 000000000000 -r 6260e42c7d49 test-data/cpgIslandExt.hg19.bed
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cpgIslandExt.hg19.bed Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,2462 @@
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diff -r 000000000000 -r 6260e42c7d49 test-data/report.html
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/report.html Wed Mar 07 16:56:29 2018 -0500
@@ -0,0 +1,16 @@
+
+EpiCSeg report
+EpiCSeg report
+
+1. Model parameters
+
+
EpiCSeg report
+
+1. Model parameters
+
+
EpiCSeg report
+
+1. Model parameters
+
+
3. Genomic annotations
+ |
+
EpiCSeg report
+
+1. Model parameters
+
+
EpiCSeg report
+
+1. Model parameters
+
+
3. Genomic annotations
+ |
+
EpiCSeg report
+
+1. Model parameters
+
+
3. Genomic annotations
+ |
+
