annotate test-data/alignment1.rnaz.out @ 0:c05c83b3ef0f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92

############################  RNAz 2.1  ##############################

 Sequences: 5
 Columns: 51
 Reading direction: forward
 Mean pairwise identity:  44.05
 Shannon entropy: 1.03471
 G+C content: 0.31965
 Mean single sequence MFE:  -5.08
 Consensus MFE:  -7.64
 Energy contribution:  -3.12
 Covariance contribution:  -4.52
 Combinations/Pair:   2.89
 Mean z-score:   0.22
 Structure conservation index:   1.50
 Background model: dinucleotide
 Decision model: structural RNA alignment quality
 SVM decision value:   3.53
 SVM RNA-class probability: 0.999916
 Prediction: RNA

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>SEQ47_2_50_+
AGGUAU-UAGAAAAAC-CAUUUCAUAACUUUGUCAAAGUUAAAUUAUAGGC
.(((..-.......))-)......((((((.....)))))).......... (  -4.20, z-score =   0.02, S)
>SEQ42_1_50_+
GUAAAUAUAGUUUAAC-CAAAACAUCAGAUUGUGAAUCUGACAACAGAGGC
.........((((...-..)))).((((((.....)))))).......... (  -5.90, z-score =  -0.43, R)
>SEQ41_1_50_+
ACUCUUUUAGUAUAAA-UAGUACCGUUAACUUCCAAUUAACUAGUUUUGAC
.........((((...-..)))).(((((.......))))).......... (  -1.80, z-score =   1.22, R)
>SEQ39_1_50_+
GUUCUUGUAGUUGAAA-UACAACGAUGGUUUUUCAUAUCAUUGGUCGUGGU
....(((((.......-)))))(((((((.......)))))))........ (  -7.30, z-score =  -0.10, R)
>SEQ34_1_51_+
CAGAGAAUAGUUUAAAUUAGAAUCUUAGCUUUGGGUGCUAAUGGUGGAGUU
..............((((...((((((((.......))))).)))..)))) (  -6.20, z-score =   0.37, R)
>consensus
AUGAAUAUAGUUUAAA_UAGAACAUUAGAUUUUCAAACUAAUAGUAGAGGC
.........((((......)))).(((((.......))))).......... ( -7.64 =  -3.12 +  -4.52)