view test-data/alignment2.rnaz.out @ 0:c05c83b3ef0f draft

planemo upload for repository https://github.com/bgruening/galaxytools/tools/GraphClust/AlignCluster commit 4406735e44aba20859c252be39f4e99df28c7a92
author rnateam
date Sat, 27 Oct 2018 13:21:39 -0400
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############################  RNAz 2.1  ##############################

 Sequences: 5
 Columns: 70
 Reading direction: forward
 Mean pairwise identity:  99.43
 Shannon entropy: 0.01031
 G+C content: 0.49714
 Mean single sequence MFE: -14.75
 Consensus MFE: -14.41
 Energy contribution: -14.41
 Covariance contribution:   0.00
 Combinations/Pair:   1.00
 Mean z-score:  -0.20
 Structure conservation index:   0.98
 Background model: dinucleotide
 Decision model: structural RNA alignment quality
 SVM decision value:  -1.57
 SVM RNA-class probability: 0.014380
 Prediction: OTHER

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>SEQ4_526_595_+
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
>SEQ5_526_595_+
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
>SEQ16_526_595_+
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
>SEQ19_523_592_+
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((...((((((((((....))))).......))))))))))))............((....)).. ( -14.41, z-score =  -0.08, R)
>SEQ14_529_598_+
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUUCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((.((((..((((((....)))))).....))))..)))))))............((....)).. ( -16.10, z-score =  -0.67, R)
>consensus
CUUUGUCCCUGACUGACUAUGCUUGUGGUUCUCCUCCAGUUGAUAGAGAAAAACAACCCAGCGAAGGCGC
(((((((...((((((((((....))))).......))))))))))))............((....)).. (-14.41 = -14.41 +   0.00)