annotate test-data/model.cmfinder.stk @ 2:ad6c540bb63d draft

planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CMFinder commit 057c2fd398055dc86eb2c00d8a74f301d5c231d9-dirty

# STOCKHOLM 1.0
#=GF AU    CMfinder 0.2

#=GS 7  WT    1.00
#=GS 9  WT    1.00
#=GS 10 WT    1.00
#=GS 15 WT    1.00
#=GS 16 WT    1.00
#=GS 17 WT    1.00
#=GS 18 WT    1.00
#=GS 23 WT    1.00
#=GS 28 WT    1.00
#=GS 30 WT    1.00
#=GS 31 WT    1.00
#=GS 32 WT    1.00
#=GS 33 WT    1.00
#=GS 35 WT    1.00
#=GS 37 WT    1.00
#=GS 46 WT    1.00

#=GS  7 DE      1.. 83	79.124153
#=GS  9 DE      1.. 73	96.426384
#=GS 10 DE      1.. 73	66.977600
#=GS 15 DE      1.. 73	79.247490
#=GS 16 DE      1.. 72	74.848335
#=GS 17 DE      1.. 71	90.305908
#=GS 18 DE      1.. 72	81.752869
#=GS 23 DE      1.. 74	80.096992
#=GS 28 DE      1.. 71	92.405518
#=GS 30 DE      1.. 72	75.032211
#=GS 31 DE      1.. 73	95.823235
#=GS 32 DE      1.. 73	94.321754
#=GS 33 DE      1.. 72	74.710342
#=GS 35 DE      1.. 72	71.951927
#=GS 37 DE      1.. 82	77.369476
#=GS 46 DE      1.. 72	83.877258

7              GUCAGGAUGGCCGAG-CGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCC
#=GR 7  SS     <<<<<<<.....................<<<<<.......>>>>>.....
9              GCUUCUGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA-----
#=GR 9  SS     <<<<<<<.....................<<<<<.......>>>>>.....
10             GCCCGGCUAGCUCAGUCGGU--AGAGCAUGAGACUCUUAAUCUCA-----
#=GR 10 SS     <<<<<<<.....................<<<<<.......>>>>>.....
15             GCCGAAAUAGCUCAGUUGGG--AGAGCGUUAGACUGAAGAUCUAA-----
#=GR 15 SS     <<<<<<<.....................<<<<<.......>>>>>.....
16             GGGGAUGUAGCUCAG-UGGU--AGAGCGCAUGCUUCGCAUGUAUG-----
#=GR 16 SS     <<<<<<<.....................<<<<<.......>>>>>.....
17             GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUCCCACGCGGG-----
#=GR 17 SS     <<<<<<<.....................<<<<<.......>>>>>.....
18             GCGUUGGUGGUAUAG-UGGU-GAGCAUAGCUGCCUUCCAAGCAGU-----
#=GR 18 SS     <<<<<<<.....................<<<<<.......>>>>>.....
23             GGCCGGUUAGCUCAGUUGGU-UAGAGCGUGGUGCUAAUAACGCCA-----
#=GR 23 SS     <<<<-<<.....................<<<<<.......>>>>>.....
28             GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUGCCACGCGGG-----
#=GR 28 SS     <<<<<<<.....................<<<<<.......>>>>>.....
30             GGCUCGUUGGUCUAG-GGGU--AUGAUUCUCGCUUAGGGUGCGAG-----
#=GR 30 SS     <<<<<<<.....................<<<<<.......>>>>>.....
31             GUUUCCGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA-----
#=GR 31 SS     <<<<<<<.....................<<<<<.......>>>>>.....
32             GUUUCCGUAGUGUAG-CGGU-UAUCACAUUCGCCUCACACGCGAA-----
#=GR 32 SS     <<<<<<<.....................<<<<<.......>>>>>.....
33             UCCUCGUUAGUAUAG-UGGU-GAGUAUCCCCGCCUGUCACGCGGG-----
#=GR 33 SS     <<<<<<<.....................<<<<<.......>>>>>.....
35             UCCCUGGUGGUCUAG-UGGC-UAGGAUUCGGCGCUUUCACCGCCG-----
#=GR 35 SS     <-<<<<<.....................<<<<<.......>>>>>.....
37             GGUAGCGUGGCCGAG-CGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCU
#=GR 37 SS     <<<<<<<.....................<<<<<.......>>>>>.....
46             UCCCUGGUGGUCUAG-UGGU-UAGGAUUCGGCGCUCUCACCGCCG-----
#=GR 46 SS     <<<<<<<.....................<<<<<.......>>>>>.....
#=GC SS_cons   (((((((,,,,,,,,,,,,,,,,,,,,,<<<<<_______>>>>>,,,,,
#=GC RF        GuuUuggUAGUuuAGUUGGUCUAGAAcaUUcgcCUcAcAcgcgAAUCUCu

7              CCUGGAGG-CGUGGGUUCGAAUCCCACUUCUGACA
#=GR 7  SS     ..........<<<<<.......>>>>>>>>>>>>.
9              -----AGGUCCCCGGUUCGAAACCGGGCAGAAGCA
#=GR 9  SS     ..........<<<<<.......>>>>>>>>>>>>.
10             -----GGGUCGUGGGUUCGAGCCCCACGUUGGGCG
#=GR 10 SS     ..........<<<<<.......>>>>>>>>>>>>.
15             -----AGGUCCCUGGUUCGAUCCCGGGUUUCGGCA
#=GR 15 SS     ..........<<<<<.......>>>>>>>>>>>>.
16             -----AGGCCCCGGGUUCGAUCCCCGGCAUCUCCA
#=GR 16 SS     ..........<<<<<.......>>>>>>>>>>>>.
17             -----AGA-CCCGGGUUCAAUUCCCGGCCAAUGCA
#=GR 17 SS     ..........<<<<<.......>>>>>>>>>>>>.
18             -----UGA-CCCGGGUUCGAUUCCCGGCCAACGCA
#=GR 18 SS     ..........<<<<<.......>>>>>>>>>>>>.
23             -----AGGUCGCGGGUUCGAUCCCCGUACGGGCCA
#=GR 23 SS     ..........<<<<<.......>>>>>>>->>>>.
28             -----AGG-CCCGGGUUCGAUUCCCGGCCAAUGCA
#=GR 28 SS     ..........<<<<<.......>>>>>>>>>>>>.
30             -----AGGUCCCGGGUUCAAAUCCCGGACGAGCCC
#=GR 30 SS     ..........<<<<<.......>>>>>>>>>>>>.
31             -----AGGUCCCCGGUUCGAAACCGGGCGGAAACA
#=GR 31 SS     ..........<<<<<.......>>>>>>>>>>>>.
32             -----AGGUCCCCGGUUCGAUCCCGGGCGGAAACA
#=GR 32 SS     ..........<<<<<.......>>>>>>>>>>>>.
33             -----AGA-CCGGGGUUCGAUUCCCCGACGGGGAG
#=GR 33 SS     ..........<<<<<.......>>>>>>>>>>>>.
35             -----CGC-CCCGGGUUCGAUUCCCGGCCAGGAAU
#=GR 35 SS     ..........<<<<<.......>>>>>>>>>>->.
37             UCGG-AGG-CGUGGGUUCGAAUCCCACCGCUGCCA
#=GR 37 SS     ..........<<<<<.......>>>>>>>>>>>>.
46             -----CGG-CCCGGGUUCGAUUCCCGGUCAGGGAA
#=GR 46 SS     ..........<<<<<.......>>>>>>>>>>>>.
#=GC SS_cons   ,,,,,,,,,,<<<<<_______>>>>>))))))):
#=GC RF        uCuGgAGGUCCCgGGUUCGAUUCCcGGccaAaaCA
//