Mercurial > repos > rnateam > graphclust_cmfinder
diff test-data/model.cmfinder.stk @ 0:78772eedd780 draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CMFinder commit 21aaee40723b5341b4236edeb0e72995c2054053
| author | rnateam |
|---|---|
| date | Fri, 16 Dec 2016 07:34:34 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/model.cmfinder.stk Fri Dec 16 07:34:34 2016 -0500 @@ -0,0 +1,107 @@ +# STOCKHOLM 1.0 +#=GF AU CMfinder 0.2 + +#=GS 7 WT 1.00 +#=GS 9 WT 1.00 +#=GS 10 WT 1.00 +#=GS 15 WT 1.00 +#=GS 16 WT 1.00 +#=GS 17 WT 1.00 +#=GS 18 WT 1.00 +#=GS 23 WT 1.00 +#=GS 28 WT 1.00 +#=GS 30 WT 1.00 +#=GS 31 WT 1.00 +#=GS 32 WT 1.00 +#=GS 33 WT 1.00 +#=GS 35 WT 1.00 +#=GS 37 WT 1.00 +#=GS 46 WT 1.00 + +#=GS 7 DE 1.. 83 79.124153 +#=GS 9 DE 1.. 73 96.426384 +#=GS 10 DE 1.. 73 66.977600 +#=GS 15 DE 1.. 73 79.247490 +#=GS 16 DE 1.. 72 74.848335 +#=GS 17 DE 1.. 71 90.305908 +#=GS 18 DE 1.. 72 81.752869 +#=GS 23 DE 1.. 74 80.096992 +#=GS 28 DE 1.. 71 92.405518 +#=GS 30 DE 1.. 72 75.032211 +#=GS 31 DE 1.. 73 95.823235 +#=GS 32 DE 1.. 73 94.321754 +#=GS 33 DE 1.. 72 74.710342 +#=GS 35 DE 1.. 72 71.951927 +#=GS 37 DE 1.. 82 77.369476 +#=GS 46 DE 1.. 72 83.877258 + +7 GUCAGGAUGGCCGAG-CGGUCUAAGGCGCUGCGUUCAGGUCGCAGUCUCC +#=GR 7 SS <<<<<<<.....................<<<<<.......>>>>>..... +9 GCUUCUGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA----- +#=GR 9 SS <<<<<<<.....................<<<<<.......>>>>>..... +10 GCCCGGCUAGCUCAGUCGGU--AGAGCAUGAGACUCUUAAUCUCA----- +#=GR 10 SS <<<<<<<.....................<<<<<.......>>>>>..... +15 GCCGAAAUAGCUCAGUUGGG--AGAGCGUUAGACUGAAGAUCUAA----- +#=GR 15 SS <<<<<<<.....................<<<<<.......>>>>>..... +16 GGGGAUGUAGCUCAG-UGGU--AGAGCGCAUGCUUCGCAUGUAUG----- +#=GR 16 SS <<<<<<<.....................<<<<<.......>>>>>..... +17 GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUCCCACGCGGG----- +#=GR 17 SS <<<<<<<.....................<<<<<.......>>>>>..... +18 GCGUUGGUGGUAUAG-UGGU-GAGCAUAGCUGCCUUCCAAGCAGU----- +#=GR 18 SS <<<<<<<.....................<<<<<.......>>>>>..... +23 GGCCGGUUAGCUCAGUUGGU-UAGAGCGUGGUGCUAAUAACGCCA----- +#=GR 23 SS <<<<-<<.....................<<<<<.......>>>>>..... +28 GCAUUGGUGGUUCAG-UGGU--AGAAUUCUCGCCUGCCACGCGGG----- +#=GR 28 SS <<<<<<<.....................<<<<<.......>>>>>..... +30 GGCUCGUUGGUCUAG-GGGU--AUGAUUCUCGCUUAGGGUGCGAG----- +#=GR 30 SS <<<<<<<.....................<<<<<.......>>>>>..... +31 GUUUCCGUAGUGUAG-UGGU-UAUCACGUUCGCCUCACACGCGAA----- +#=GR 31 SS <<<<<<<.....................<<<<<.......>>>>>..... +32 GUUUCCGUAGUGUAG-CGGU-UAUCACAUUCGCCUCACACGCGAA----- +#=GR 32 SS <<<<<<<.....................<<<<<.......>>>>>..... +33 UCCUCGUUAGUAUAG-UGGU-GAGUAUCCCCGCCUGUCACGCGGG----- +#=GR 33 SS <<<<<<<.....................<<<<<.......>>>>>..... +35 UCCCUGGUGGUCUAG-UGGC-UAGGAUUCGGCGCUUUCACCGCCG----- +#=GR 35 SS <-<<<<<.....................<<<<<.......>>>>>..... +37 GGUAGCGUGGCCGAG-CGGUCUAAGGCGCUGGAUUUAGGCUCCAGUCUCU +#=GR 37 SS <<<<<<<.....................<<<<<.......>>>>>..... +46 UCCCUGGUGGUCUAG-UGGU-UAGGAUUCGGCGCUCUCACCGCCG----- +#=GR 46 SS <<<<<<<.....................<<<<<.......>>>>>..... +#=GC SS_cons (((((((,,,,,,,,,,,,,,,,,,,,,<<<<<_______>>>>>,,,,, +#=GC RF GuuUuggUAGUuuAGUUGGUCUAGAAcaUUcgcCUcAcAcgcgAAUCUCu + +7 CCUGGAGG-CGUGGGUUCGAAUCCCACUUCUGACA +#=GR 7 SS ..........<<<<<.......>>>>>>>>>>>>. +9 -----AGGUCCCCGGUUCGAAACCGGGCAGAAGCA +#=GR 9 SS ..........<<<<<.......>>>>>>>>>>>>. +10 -----GGGUCGUGGGUUCGAGCCCCACGUUGGGCG +#=GR 10 SS ..........<<<<<.......>>>>>>>>>>>>. +15 -----AGGUCCCUGGUUCGAUCCCGGGUUUCGGCA +#=GR 15 SS ..........<<<<<.......>>>>>>>>>>>>. +16 -----AGGCCCCGGGUUCGAUCCCCGGCAUCUCCA +#=GR 16 SS ..........<<<<<.......>>>>>>>>>>>>. +17 -----AGA-CCCGGGUUCAAUUCCCGGCCAAUGCA +#=GR 17 SS ..........<<<<<.......>>>>>>>>>>>>. +18 -----UGA-CCCGGGUUCGAUUCCCGGCCAACGCA +#=GR 18 SS ..........<<<<<.......>>>>>>>>>>>>. +23 -----AGGUCGCGGGUUCGAUCCCCGUACGGGCCA +#=GR 23 SS ..........<<<<<.......>>>>>>>->>>>. +28 -----AGG-CCCGGGUUCGAUUCCCGGCCAAUGCA +#=GR 28 SS ..........<<<<<.......>>>>>>>>>>>>. +30 -----AGGUCCCGGGUUCAAAUCCCGGACGAGCCC +#=GR 30 SS ..........<<<<<.......>>>>>>>>>>>>. +31 -----AGGUCCCCGGUUCGAAACCGGGCGGAAACA +#=GR 31 SS ..........<<<<<.......>>>>>>>>>>>>. +32 -----AGGUCCCCGGUUCGAUCCCGGGCGGAAACA +#=GR 32 SS ..........<<<<<.......>>>>>>>>>>>>. +33 -----AGA-CCGGGGUUCGAUUCCCCGACGGGGAG +#=GR 33 SS ..........<<<<<.......>>>>>>>>>>>>. +35 -----CGC-CCCGGGUUCGAUUCCCGGCCAGGAAU +#=GR 35 SS ..........<<<<<.......>>>>>>>>>>->. +37 UCGG-AGG-CGUGGGUUCGAAUCCCACCGCUGCCA +#=GR 37 SS ..........<<<<<.......>>>>>>>>>>>>. +46 -----CGG-CCCGGGUUCGAUUCCCGGUCAGGGAA +#=GR 46 SS ..........<<<<<.......>>>>>>>>>>>>. +#=GC SS_cons ,,,,,,,,,,<<<<<_______>>>>>))))))): +#=GC RF uCuGgAGGUCCCgGGUUCGAUUCCcGGccaAaaCA +//