Mercurial > repos > rnateam > graphclust_postprocessing

comparison glob_report.xml @ 15:c7ca5d173482 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 6767a5ffb02052c844e9d862c79912f998f39d8e
author rnateam
date Mon, 20 Nov 2017 04:50:48 -0500
parents 98ceca65a0b6
children 79df97a1bc0f
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14:98ceca65a0b6 15:c7ca5d173482
1 <tool id="glob_report" name="cluster_collection_report" version="0.2"> 1 <tool id="glob_report" name="cluster_collection_report" version="0.3" >
2 <requirements> 2 <requirements>
3 <requirement type="package" version="0.3.1">graphclust-wrappers</requirement> 3 <requirement type="package" version="0.5.2">graphclust-wrappers</requirement>
4 <requirement type="package" version='0.5'>perl-array-utils</requirement> 4 <requirement type="package" version='0.5'>perl-array-utils</requirement>
5 <requirement type="package" version='0.18.1'>scikit-learn</requirement> 5 <requirement type="package" version='0.18.1'>scikit-learn</requirement>
6 <requirement type="package" version='1.8.10'>locarna</requirement> 6 <requirement type="package" version='1.8.10'>locarna</requirement>
7 <requirement type="package" version='2.1'>rnaz</requirement> 7 <requirement type="package" version='2.1'>rnaz</requirement>
8 <requirement type="package" version="1.1">infernal</requirement> 8 <requirement type="package" version="1.1.2">infernal</requirement>
9 <requirement type="package" version='2.2.10'>viennarna</requirement> 9 <requirement type="package" version='2.2.10'>viennarna</requirement>
10 <requirement type="package" version='1.3.23'>graphicsmagick</requirement> 10 <requirement type="package" version='1.3.26'>graphicsmagick</requirement>
11 <requirement type="package" version='0.3.1'>rscape</requirement> 11 <requirement type="package" version='0.6.1'>rscape</requirement>
12 <requirement type="package" version='6.0'>unzip</requirement> 12 <requirement type="package" version='6.0'>unzip</requirement>
13 13
14 </requirements> 14 </requirements>
15 <stdio> 15 <stdio>
16 <exit_code range="1:" /> 16 <exit_code range="1:" />
35 #for $mods in $model_tree_files: 35 #for $mods in $model_tree_files:
36 ###set $inputFilesTrees += str($mods.element_identifier)+',' 36 ###set $inputFilesTrees += str($mods.element_identifier)+','
37 ln -f -s '$mods' ./MODEL/$mods.element_identifier && 37 ln -f -s '$mods' ./MODEL/$mods.element_identifier &&
38 #end for 38 #end for
39 #set $inputFilesTrees = $inputFilesTrees[:-1] 39 #set $inputFilesTrees = $inputFilesTrees[:-1]
40
41
40 'glob_res.pl' 42 'glob_res.pl'
41 ##'$inputFiles' 43 ##'$inputFiles'
42 $merge_cluster_ol 44 $merge_cluster_ol
43 $merge_overlap 45 $merge_overlap
44 $min_cluster_size 46 $min_cluster_size
70 #end if 72 #end if
71 #end if 73 #end if
72 74
73 && 75 &&
74 python '$__tool_directory__/evaluation.py' 76 python '$__tool_directory__/evaluation.py'
77
75 #if $cdhit: 78 #if $cdhit:
76 && 79 &&
77 python '$__tool_directory__/addCdhitseqs.py' '$cdhit' 80 python '$__tool_directory__/addCdhitseqs.py' '$cdhit'
78 #end if 81 #end if
79 ]]> 82 ]]>