Mercurial > repos > rnateam > graphclust_postprocessing

diff evaluation.py @ 3:79b9117aef01 draft

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planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit c03cf64554289eb098267c0923cf0cf7b245cc0c
author rnateam
date Wed, 04 Jan 2017 18:15:07 -0500
parents b8e32e577597
children 4310ac018d05
line wrap: on
line diff
--- a/evaluation.py	Sat Dec 24 18:08:36 2016 -0500
+++ b/evaluation.py	Wed Jan 04 18:15:07 2017 -0500
@@ -49,16 +49,10 @@
     full.write(toWrite)
 
 
-listOfClasses = []
-listOfClusters = []
 pattern = re.compile("^RF.*$")
 
 
 if len(listOfClasses) > 0 and  pattern.match(str(listOfClasses[0])):
-    with open("RESULTS/fullTab.tabular", "r") as tabF:
-        for line in tabF.readlines():
-            listOfClasses.append(line.split()[0])
-            listOfClusters.append(line.split()[1])
 
     completeness_score = metrics.completeness_score(listOfClasses, listOfClusters)
     homogeneity_score = metrics.homogeneity_score(listOfClasses, listOfClusters)