Mercurial > repos > rnateam > graphclust_postprocessing
diff glob_report.xml @ 6:869a6e807d76 draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust/CollectResults commit 057c2fd398055dc86eb2c00d8a74f301d5c231d9-dirty
author | rnateam |
---|---|
date | Wed, 22 Feb 2017 16:51:06 -0500 |
parents | 4310ac018d05 |
children | 870dfc90473f |
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--- a/glob_report.xml Sat Jan 21 17:39:21 2017 -0500 +++ b/glob_report.xml Wed Feb 22 16:51:06 2017 -0500 @@ -1,6 +1,6 @@ <tool id="glob_report" name="Report_Results" version="0.1"> <requirements> - <requirement type="package" version="0.1.7">graphclust-wrappers</requirement> + <requirement type="package" version="0.1.8">graphclust-wrappers</requirement> <requirement type="package" version='0.5'>perl-array-utils</requirement> <requirement type="package" version='0.18.1'>scikit-learn</requirement> <requirement type="package" version='1.8.10'>locarna</requirement> @@ -29,7 +29,7 @@ #set $inputFilesTrees += str($mods)+',' #end for #set $inputFilesTrees = $inputFilesTrees[:-1] - 'glob_res.pl' + 'glob_res.pl' '$inputFiles' $merge_cluster_ol $merge_overlap @@ -158,8 +158,8 @@ <tests> <test> <param name="FASTA" value="FASTA.zip" ftype="searchgui_archive"/> - <param name="cmsearch_results" value="1.tabular,2.tabular"/> - <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa"/> + <param name="cmsearch_results" value="1.tabular,2.tabular,3.tabular,4.tabular,5.tabular"/> + <param name="model_tree_files" value="1.1.model.tree.fa,1.2.model.tree.fa,1.3.model.tree.fa,1.4.model.tree.fa,1.5.model.tree.fa"/> <param name="partition_type" value="0"/> <param name="cut_type" value="0"/> <conditional name="iteration_num"> @@ -175,19 +175,23 @@ <output_collection name="clusters" type="list"> <element name="1.cluster.all" file="RESULTS/1.cluster.all" compare="contains"/> <element name="2.cluster.all" file="RESULTS/2.cluster.all" compare="contains"/> + <element name="3.cluster.all" file="RESULTS/3.cluster.all" compare="contains"/> + <element name="4.cluster.all" file="RESULTS/4.cluster.all" compare="contains"/> </output_collection> <output_collection name="partitions"> <element name="final_overlap.map" file="RESULTS/partitions/final_overlap.map" compare="contains"> <assert_contents> - <has_text text="1.1 1.1" /> - <has_text text="1.2 1.2" /> + <has_text text="1.1 1.1 1.2" /> + <has_text text="1.3 1.3" /> + <has_text text="1.4 1.4" /> + <has_text text="1.5 1.5 " /> </assert_contents> </element> <element name="final_overlap.matrix" file="RESULTS/partitions/final_overlap.matrix" compare="contains"> <assert_contents> - <has_text text="MODEL CLASS 0 0" /> - <has_text text="1.2" /> - <has_text text="1.1" /> + <has_text text="MODEL CLASS 0 0 0 0 0" /> + <!--has_text text="1.2" /> + <has_text text="1.1" /--> </assert_contents> </element> <element name="final_partition.hard.best" file="RESULTS/partitions/final_partition.hard.best" /> @@ -199,10 +203,14 @@ <output_collection name="topSecondaryStruct" type="list"> <element name="1.cluster.top5.alirna.png" file="1.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.alirna.png" file="2.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> + <element name="3.cluster.top5.alirna.png" file="3.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> + <element name="4.cluster.top5.alirna.png" file="4.cluster.top5.alirna.png" ftype="png" compare="sim_size" /> </output_collection> <output_collection name="topDot" type="list"> <element name="1.cluster.top5.aln.png" file="1.cluster.top5.aln.png" ftype="png" compare="sim_size" /> <element name="2.cluster.top5.aln.png" file="2.cluster.top5.aln.png" ftype="png" compare="sim_size" /> + <element name="3.cluster.top5.aln.png" file="3.cluster.top5.aln.png" ftype="png" compare="sim_size" /> + <element name="4.cluster.top5.aln.png" file="4.cluster.top5.aln.png" ftype="png" compare="sim_size" /> </output_collection> <output name="RESULTS_zip" file="RESULTS.zip" ftype="zip" compare="sim_size" />