comparison splitSHAPE.py @ 9:0690d59881b9 draft

planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust commit 65d322f9ab2f24d65b307f3553589149a1d678d5

8:a04e93fdb40a

with open(shape_file, 'r') as shape:
    content = shape.read()
    lines = content.split('\n')
    for line in lines:
        if pattern.match(line):
            line = line.replace('>','').strip()
            react_arr=[]
            react_dict[line] = react_arr
            continue
        else:
            react_arr.append(line)

toWrite = ""
chunks = []
for i in range(len(orig_id)):
    if not orig_id[i] in react_dict:
        raise RuntimeError('Error key {} not found'.format(orig_id))

    react_val = react_dict[orig_id[i]]
    toWrite += '>' + str(seq_id[i]) + " " + seq_string[i] + "\n"
    chunks = re.findall(r'\d+', seq_string[i])

9:0690d59881b9

with open(shape_file, 'r') as shape:
    content = shape.read()
    lines = content.split('\n')
    for line in lines:
        if pattern.match(line):
            line = line.replace('>','').split()[0]
            react_arr=[]
            react_dict[line] = react_arr
            continue
        else:
            react_arr.append(line)

toWrite = ""
chunks = []
for i in range(len(orig_id)):
    if not orig_id[i] in react_dict:
        raise RuntimeError('Error key {} {} not found'.format(i, orig_id[i]))

    react_val = react_dict[orig_id[i]]
    toWrite += '>' + str(seq_id[i]) + " " + seq_string[i] + "\n"
    chunks = re.findall(r'\d+', seq_string[i])