Mercurial > repos > rnateam > graphclust_preprocessing
comparison test-data/sample_4_all.stk @ 11:c0c9d19bc7b2 draft
planemo upload for repository https://github.com/eteriSokhoyan/galaxytools/tree/branchForIterations/tools/GraphClust commit 746497a64b955f6b9afc1944d1c1d8d877e53267
| author | rnateam |
|---|---|
| date | Tue, 18 Jul 2017 01:43:49 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 10:16bcaef3dc1e | 11:c0c9d19bc7b2 |
|---|---|
| 1 # STOCKHOLM 1.0 | |
| 2 #=GF SQ 5 | |
| 3 ath1 TAACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTGTCGTTTCCACG---------GCTGTCGTAGACGGTGGCAGCTGCTGCTGCAGCGGTTGATGATAGTGGTAGGCGGAGAAGT | |
| 4 bol1 TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGTGGCACG---TGTAACGTTTGGTGGTTATAGTAAGCTGTCAAGT | |
| 5 bna1 TTACTTTGAAGTTGTCAACTAGGCAACCGCGAGGTTTTGTCTCCTTGACGGTCTTCAACACCGCTGTTGATGGTGGCGGCACG---TGTAACGTTTGATGGTTATAGTAAGCTGTCAAGT | |
| 6 bra1 TTACTCGGAAGTTGTCAACTAGGGAACCGCGAGGTTTTGTCGCCTTGACGGTCTTCAACACCGTCGTCGATGGT---GGCACG---------------TGATTATAGTATGCGGTCAAGT | |
| 7 aly1 TTACTCGGAAGTTGTCGATTGAACAAACTTGAGGTTTTATCGTCTTCACATCTCTCACCGCCGCCGGAGACGGTGGCTGCTGCTGCTGCAGCGGTTGATGAGAGTAGTAGGCGGAGAAGT | |
| 8 // | |
| 9 # STOCKHOLM 1.0 | |
| 10 #=GF SQ 5 | |
| 11 ath2 GGTCGAGAAAGGAACCGGCAATATCGAACCGGAAAAATCCGAGATAACCACGTTTTGCATAAACTGGTACATAAGCAGAACGTCACCGTTAACCAAAGCCATGTCCTTAAACCGGTCTCG | |
| 12 bol2 AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG | |
| 13 bna2 AGCAGAGAACGGAACCGGTAGAATTGAACCGGTTGAACCGGAGCTGACCACGTTTTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAGCGCCATGTCTTTAAACCGGTCTCG | |
| 14 bra2 AGCAGAGAACGGAACCGGTAAAATCGAACCGGTTGAACCGGAGCTGACCACGTTCTGCATAAACTGGTACAAAAGCAAGACATCGCCGTTCACCAACGCCATGTCTTTAAACCGGTCTCG | |
| 15 aly2 GGTCGAGAAAGGAACCGGCAAAATCGAACCGGAAACATTCGAGCTAACCACGTTTTGCATAAACTGGTACATAAGCAAAACGTCACCGTTAACCAAAGCCACGTCCTTAAACCGGTCTCG | |
| 16 // | |
| 17 # STOCKHOLM 1.0 | |
| 18 #=GF SQ 5 | |
| 19 ath3 CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGCGCTTTGTTTGGTGGCCGAAATCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCGGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC | |
| 20 bna3 CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATCACTCTGTTCACGTCGTTCTTTAAGCCTAGCTTGGCGGAGAGGTAAAGGTCAC | |
| 21 bol3 CCGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGAGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGCACACGGCTTCCGGGGTTGTTCTCGGCTATGTCTTTGGCGACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAGTAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC | |
| 22 bra3 CTGCACCGTCCCCGAACAAAGCTGCCCCGACCAGGTCGTAAGGGCGAGCTTTGTTCGGTGGTCGGAACCCGAGGATGGTGGTTTCAGAGGTTGTGAGGAGAACACGGCTTCCGGGGTTGTTCTCAGCGATGTCTTTGGCCACACGGAGGCCTGTTACGCCTCCGTAGCAGCCTAGAAAATAAAGCATTACTCTGTTCACGTCGCTCTTTAGGCCTAGCTTGGCTGAGAGGTAAAGGTCGC | |
| 23 aly3 CTGCACCATCTCCAAACAGAGCAGCTCCAACTAGGTCGTACGGACGAGCTTTGTTTGGTGGGCGAAACCCGAGAATGGTGGTTTCAGAGGTTGTGAGCAGAACACGGCTTCCCGGGTTGTTCTCAGCAATGTCTTTGGCCACACGGAGGCCAGTCACACCTCCGTAGCATCCCAGAAAATACAGCATCACTCTGTTCACGTCATTCCTCAGGCCTAGCTTTGCTGAGAGGTAAAGGTCAC | |
| 24 // | |
| 25 # STOCKHOLM 1.0 | |
| 26 #=GF SQ 5 | |
| 27 ath4 A----------TGAAGGAGGACTACTTACGAGTGTTGGAAGCGGCAGCGGCAGTGACCGCAGCTGAAGAGCTTGTCGGAGAAACCGACATCACCGCACATGCAACACACTCTCTCCATGa | |
| 28 bna4 ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT | |
| 29 bol4 ATATATAGCCTTGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGTTTGTCGGAAAATCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT | |
| 30 bra4 ATATATGGCCTAGGAGAAGG--TACGTACGAGTGTTGAAAGCGGTTGCGGCAGTGCCCGCAGCGGAATAGCTTGTCGGAAAAGCCGACGTCGCCGCACATGCAGCACACTTTCTCCATGT | |
| 31 aly4 -----------TAAAGGAGGACTACTTACGAGTGCTGTAAGCGGCAGCGGCAGTGCCCGCAGCTGAAGAGCTTGTCGGAGAAACCGACGTCGCCGCACATGCAACATACTCTCTCCATGA | |
| 32 // | |
| 33 # STOCKHOLM 1.0 | |
| 34 #=GF SQ 5 | |
| 35 ath5 AACGGCGTCAAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTGCTC | |
| 36 bra5 GATCGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------------CCTCCACCTCTATAGCTACCTGAAAACGTCGTCGCATCATCTGCTTTATC | |
| 37 bol5 GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGgcgacatctcctcctccgcctccgcctCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC | |
| 38 bna5 GATGGCATCAGCGATCTCTTTCAAATCCCTATGCCTAACGGCGACATCTCCT------CCTCCGCCTCCGCCTCTATAGCTACCGCAATACGTCGTCGCATCATCTTCTTTATC | |
| 39 aly5 AACGGCGTCGAGGATCTCCTTCAAATTCTTGTGCCTTACCACCA-ATTTGGT--------------------CTTGTAGCAGTCGGAAGAAGTGGTAACATGGTCAGAGTTGTC | |
| 40 // | |
| 41 # STOCKHOLM 1.0 | |
| 42 #=GF SQ 5 | |
| 43 ath6 TAAAAAATAAAGAAT---CTTACCATCACCACGACTGTTTGTTCTAGCCAACTGATAAATAGTGTAGCCTGAAGATGAAAGCTGGTGGTGGTACATGTTCACTAATTCCTCATTCCCAAC | |
| 44 bol6 TAAAATGGAGAACCTTTGCTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC | |
| 45 bna6 TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATTGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCACCAATTCTTCATTTGCAAC | |
| 46 bra6 TAAAATGGAGAACCTTTACTTACCATCGCCACGACGGTTTGTTCTAGGCAACTGGAAAATATCGTAGCCTGCAGTGGCAAGGCGATCATGGTACATGTTCGCCAATTCTTCATTTGCAAC | |
| 47 aly6 TaaaaaaaaaaGAAT---GTTACCATCACCACGACTGTTTGTTCTAGCCAACTGGAAAATAGTGTAGCCAGAAGTGCCAAGCTGGTCGTGGTACATGTTGACTAATTCCTCATTCCCAAC | |
| 48 // | |
| 49 # STOCKHOLM 1.0 | |
| 50 #=GF SQ 5 | |
| 51 ath7 TGGATCTCTGGATCAGCTGTGCGACCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGTGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGATTG---C | |
| 52 bra7 TGAAGCTCCGGGTCAGCAGTTCGGCCGGACGTTGATGATCCAAACGCTAAACTCCTTTGAACGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC | |
| 53 bol7 TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC | |
| 54 bna7 TGAAGCTCCGGATCAGCAGCTCGGCCGGACGTTGAAGATCCAAACGCTAAACGACTTTGAGCGACTGGTCGGACGCGGGAACGCGCCGCTGAAGCAAACGCTAATAATCGGGACTGCATC | |
| 55 aly7 TGGATCTCTGGATCAGCGGTGCGGCCAGACGTGGATGATCCAAACGCTAAACGCCTTTGAGCGATTGGTCGAACACGGGAACGCGCCGCAGAAGCAAACGCTAATAATCGGGATTGCATC | |
| 56 // | |
| 57 # STOCKHOLM 1.0 | |
| 58 #=GF SQ 5 | |
| 59 ath8 TTGCTCTTCTAAACTCGGTCGGGGAGTATCGTCTACGATTTCTTCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATACCCTGAAACACAAGCAATCACCAAAA---ACTTAAACAAAG | |
| 60 bra8 TTGCTCTTCTAAACTTGACCGTGGTTGTTCATCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCTACATCATCCATACCCTGAAGCATAATCAATCACAAAACAATATTT-AAAAGAG | |
| 61 bol8 TtgttgtTctaaacttgaccgtggttGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA- | |
| 62 bna8 TTGTTGTTCTAAACTTGACCGTGGTTGTTCGTCGACGATTTCTTCTGCCGCCGTCTTAGGGTTCGCCACGTCATCCATACCCTGAAGCATAATCAATAACAAAACAATATTT-AAAAGA- | |
| 63 aly8 TTGCTCTTCTAAACTCGGTCGTGGGGTGTCGTCTACGATTTCATCCGCCGCCGTTTTAGGGTTTGCAACATCATCCATAACCTGAAACACAAGGAATCAC--------ACTT-AACAGAG | |
| 64 // | |
| 65 # STOCKHOLM 1.0 | |
| 66 #=GF SQ 5 | |
| 67 ath9 CGTAGAAAAGGCTTGACCGCAAAATGGATATATTATATGTACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---TCTACAATATTGAAGCCAA-CTATGGTCAAACCACAATCAAATTCCCTATAGCTCCTCaaaaaaaaCTACTCAAGC | |
| 68 bna9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA--------------- | |
| 69 bol9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGTAGTAATCCTCTTCCCTGTAATATTCAAGCAAAGCTGTGAGTAAACTACAACC----------TATTTGGGCAAA--------------- | |
| 70 bra9 C-TACCAAATGC--AAAGATAAGGCAAA------------ACCTATGAGTTTCTCGAGCTTTGTTTGAAGAAGTAATCCTCTTCCCTATAATATCCAAGCAAAGCTGTGAGTAAACTGCAACC----------TAATTGGGCAAA--------------- | |
| 71 aly9 CATAGAAAAGGCTTGACCACAAACTGGA-----TATATATACCTATGAGTTTTTCGAGCTTTGTTTGAAGTAGTAATCCTC---CCTAAAATATTGAAGCCAA-CTACTGTCAAACCACAATAAATTTCCCTATAGCTCCTCAAA--------------- | |
| 72 // |