Mercurial > repos > rnateam > graphprot_predict_profile
comparison graphprot_train_predict.xml @ 5:ddcf35a868b8 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit ad60258f5759eaa205fec4af6143c728ea131419
author | bgruening |
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date | Wed, 05 Jun 2024 16:40:51 +0000 |
parents | 7bbb7bf6304f |
children | 33b590aa07c1 |
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4:4ad83aed5c3c | 5:ddcf35a868b8 |
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18 --opt-neg '$action_type.hpo_options.hpo_mode_type.neg_parop_fasta' | 18 --opt-neg '$action_type.hpo_options.hpo_mode_type.neg_parop_fasta' |
19 #end if | 19 #end if |
20 $action_type.training_options.disable_cv | 20 $action_type.training_options.disable_cv |
21 $action_type.training_options.disable_motifs | 21 $action_type.training_options.disable_motifs |
22 --min-train $action_type.training_options.min_train | 22 --min-train $action_type.training_options.min_train |
23 --gp-output | |
23 | 24 |
24 #elif $action_type.action_type_selector == 'predict': | 25 #elif $action_type.action_type_selector == 'predict': |
25 python '$__tool_directory__/graphprot_predict_wrapper.py' | 26 python '$__tool_directory__/graphprot_predict_wrapper.py' |
26 --data-id GraphProt | 27 --data-id GraphProt |
27 --fasta '$action_type.input_fasta_file' | 28 --fasta '$action_type.input_fasta_file' |
33 --sc-thr $action_type.prediction_options.score_thr | 34 --sc-thr $action_type.prediction_options.score_thr |
34 --max-merge-dist $action_type.prediction_options.max_merge_dist | 35 --max-merge-dist $action_type.prediction_options.max_merge_dist |
35 --ap-extlr $action_type.prediction_options.ap_extlr | 36 --ap-extlr $action_type.prediction_options.ap_extlr |
36 $action_type.prediction_options.conf_out | 37 $action_type.prediction_options.conf_out |
37 $action_type.prediction_options.ws_pred_out | 38 $action_type.prediction_options.ws_pred_out |
39 --gp-output | |
38 #end if | 40 #end if |
39 | 41 |
40 | 42 |
41 ]]></command> | 43 ]]></command> |
42 | 44 |