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comparison graphprot_train_predict.xml @ 5:ddcf35a868b8 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit ad60258f5759eaa205fec4af6143c728ea131419
author bgruening
date Wed, 05 Jun 2024 16:40:51 +0000
parents 7bbb7bf6304f
children
comparison
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4:4ad83aed5c3c 5:ddcf35a868b8
18 --opt-neg '$action_type.hpo_options.hpo_mode_type.neg_parop_fasta' 18 --opt-neg '$action_type.hpo_options.hpo_mode_type.neg_parop_fasta'
19 #end if 19 #end if
20 $action_type.training_options.disable_cv 20 $action_type.training_options.disable_cv
21 $action_type.training_options.disable_motifs 21 $action_type.training_options.disable_motifs
22 --min-train $action_type.training_options.min_train 22 --min-train $action_type.training_options.min_train
23 --gp-output
23 24
24 #elif $action_type.action_type_selector == 'predict': 25 #elif $action_type.action_type_selector == 'predict':
25 python '$__tool_directory__/graphprot_predict_wrapper.py' 26 python '$__tool_directory__/graphprot_predict_wrapper.py'
26 --data-id GraphProt 27 --data-id GraphProt
27 --fasta '$action_type.input_fasta_file' 28 --fasta '$action_type.input_fasta_file'
33 --sc-thr $action_type.prediction_options.score_thr 34 --sc-thr $action_type.prediction_options.score_thr
34 --max-merge-dist $action_type.prediction_options.max_merge_dist 35 --max-merge-dist $action_type.prediction_options.max_merge_dist
35 --ap-extlr $action_type.prediction_options.ap_extlr 36 --ap-extlr $action_type.prediction_options.ap_extlr
36 $action_type.prediction_options.conf_out 37 $action_type.prediction_options.conf_out
37 $action_type.prediction_options.ws_pred_out 38 $action_type.prediction_options.ws_pred_out
39 --gp-output
38 #end if 40 #end if
39 41
40 42
41 ]]></command> 43 ]]></command>
42 44