diff graphprot_predict_wrapper.py @ 2:7bbb7bf6304f draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/graphprot commit afbe0da7a518d6fc60ea066917b1e567c8c42391"

--- a/graphprot_predict_wrapper.py	Wed Jan 22 10:14:41 2020 -0500
+++ b/graphprot_predict_wrapper.py	Mon Jan 27 18:37:05 2020 -0500
@@ -186,11 +186,11 @@
     # Read in FASTA sequences to check for uppercase sequences.
     seqs_dic = gplib.read_fasta_into_dic(args.in_fa)
     c_uc_nt = gplib.seqs_dic_count_uc_nts(seqs_dic)
-    assert c_uc_nt, "no uppercase nucleotides in input .fa sequences. Please change sequences to uppercase (keep in mind GraphProt only scores uppercase regions (according to its viewpoint concept))"
+    assert c_uc_nt, "no uppercase nucleotides in input .fa sequences. Please change sequences to uppercase (keep in mind GraphProt only scores uppercase regions (according to its viewpoint concept)"
     if not args.ws_pred:
         # Check for lowercase sequences.
         c_lc_nt = gplib.seqs_dic_count_lc_nts(seqs_dic)
-        assert not c_lc_nt, "lowercase nucleotides not allowed in profile predictions, since GraphProt only scores uppercase regions (according to its viewpoint concept))"
+        assert not c_lc_nt, "lowercase nucleotides in input .fa not allowed in profile predictions, since GraphProt only scores uppercase regions (according to its viewpoint concept)"
     # Check .bed.
     if args.genomic_sites_bed:
         # An array of checks, marvelous.