view test-data/Hammerhead_HH9.cm @ 1:ef8be69b8e9e draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv commit 108e83ea251bee3b952cb49ef758e69294608c1d
author rnateam
date Wed, 02 Jan 2019 10:17:46 -0500
parents 559e11a57c3e
children
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INFERNAL1/a [1.1 | October 2013]
NAME     Hammerhead_HH9
ACC      RF02275
STATES   240
NODES    65
CLEN     77
W        103
ALPH     RNA
RF       no
CONS     yes
MAP      yes
DATE     Fri Feb 28 01:30:52 2014
COM      [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
COM      [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
PBEGIN   0.05
PEND     0.05
WBETA    1e-07
QDBBETA1 1e-07
QDBBETA2 1e-15
N2OMEGA  1.52588e-05
N3OMEGA  1.52588e-05
ELSELF   -0.08926734
NSEQ     33
EFFN     1.567017
CKSUM    796486396
NULL     0.000  0.000  0.000  0.000 
GA       52.00
TC       52.40
NC       51.90
EFP7GF   -8.3103 0.71890
ECMLC    0.69960    -5.09380     2.60784     1600000      262533  0.004571
ECMGC    0.43156   -15.39797    -3.48915     1600000       68246  0.005861
ECMLI    0.73853    -2.62455     4.04692     1600000      165569  0.007248
ECMGI    0.51255    -9.59123    -0.17571     1600000       49879  0.008019
CM
                                             [ ROOT    0 ]      -      - - - - -
     S     0    -1 0     1     4     0     1   103   135  -6.791  -6.998  -0.308  -2.513                 
    IL     1     1 2     1     4     4    30   105   138  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR     2     2 3     2     3     3    30   105   137  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL    1 ]      1      - u - - -
    ML     3     2 3     5     3     3    29   103   136  -7.602  -0.027  -6.257                         -0.234 -0.123 -0.914  0.766 
     D     4     2 3     5     3     1    26   101   134  -7.290  -2.048  -0.412                         
    IL     5     5 3     5     3     3    29   104   137  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL    2 ]      2      - u - - -
    ML     6     5 3     8     3     2    28   102   135  -7.645  -0.026  -6.299                         -0.229 -0.080 -0.850  0.719 
     D     7     5 3     8     3     1    25   100   133  -7.141  -0.628  -1.532                         
    IL     8     8 3     8     3     2    28   103   135  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL    3 ]      3      - g - - -
    ML     9     8 3    11     3     1    27   101   134  -8.220  -0.291  -2.481                          0.177 -0.839  0.571 -0.278 
     D    10     8 3    11     3     0    24    99   132  -5.620  -0.734  -1.403                         
    IL    11    11 3    11     3     2    28   101   134  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    4 ]      -     84 - u - -
    MR    12    11 3    14     3     3    29   100   133  -7.954  -0.025  -6.271                          0.090 -0.349 -0.887  0.687 
     D    13    11 3    14     3     0    22    97   130  -7.578  -2.756  -0.240                         
    IR    14    14 3    14     3     2    28   100   133  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    5 ]      -     83 - a - -
    MR    15    14 3    17     3     2    28    99   132  -7.954  -0.025  -6.271                          0.182 -0.063 -0.261  0.103 
     D    16    14 3    17     3     0    22    97   130  -7.578  -1.489  -0.647                         
    IR    17    17 3    17     3     2    27    99   132  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    6 ]      -     82 - a - -
    MR    18    17 3    20     3     2    28    98   131  -8.058  -0.023  -6.376                          0.400 -0.418 -0.083 -0.018 
     D    19    17 3    20     3     0    21    95   128  -7.241  -2.419  -0.310                         
    IR    20    20 3    20     3     2    27    98   131  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    7 ]      -     81 - u - -
    MR    21    20 3    23     3     2    27    97   130  -8.058  -0.023  -6.376                          0.287 -0.181 -0.578  0.297 
     D    22    20 3    23     3     0    21    94   127  -7.241  -2.419  -0.310                         
    IR    23    23 3    23     3     2    26    97   130  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    8 ]      -     80 - a - -
    MR    24    23 3    26     3     2    27    96   129  -8.058  -0.023  -6.376                          0.651 -0.505 -0.299 -0.132 
     D    25    23 3    26     3     0    20    93   126  -7.241  -2.419  -0.310                         
    IR    26    26 3    26     3     1    26    96   129  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR    9 ]      -     79 - g - -
    MR    27    26 3    29     3     2    26    95   128  -8.058  -0.023  -6.376                          0.106 -0.685  0.234  0.170 
     D    28    26 3    29     3     0    20    93   125  -7.241  -2.419  -0.310                         
    IR    29    29 3    29     3     1    25    95   128  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   10 ]      -     78 - a - -
    MR    30    29 3    32     3     2    25    94   127  -8.058  -0.023  -6.376                          0.761 -0.594 -0.542 -0.065 
     D    31    29 3    32     3     0    20    92   125  -7.241  -2.419  -0.310                         
    IR    32    32 3    32     3     1    24    94   127  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   11 ]      -     77 - a - -
    MR    33    32 3    35     3     1    25    93   126  -8.058  -0.023  -6.376                          0.768 -1.014  0.040 -0.369 
     D    34    32 3    35     3     0    19    92   124  -7.241  -0.661  -1.471                         
    IR    35    35 3    35     3     1    23    93   126  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   12 ]      -     76 - u - -
    MR    36    35 3    38     5     1    24    92   125  -6.968  -0.043  -6.783  -6.995  -7.887         -0.230 -0.756 -0.646  0.938 
     D    37    35 3    38     5     0    17    90   123  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR    38    38 3    38     5     1    21    92   125  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   13 ]      4     75 g c - -
    MP    39    38 3    43     6     2    25    91   124  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -2.590 -2.180 -1.964  1.850 -2.759 -3.476  1.187 -2.998 -2.797  2.192 -3.287  0.312  0.916 -2.754 -0.463 -1.764 
    ML    40    38 3    43     6     1    19    89   122  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    41    38 3    43     6     1    19    89   122  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    42    38 3    43     6     0    15    86   119  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    43    43 5    43     6     1    21    90   123  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    44    44 6    44     5     1    21    90   123  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   14 ]      5     74 G C - -
    MP    45    44 6    49     6     2    24    89   122  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.253 -2.836 -4.324  0.557 -4.803 -4.534 -0.228 -4.617 -4.028  3.497 -4.405 -0.223 -0.550 -4.133 -2.239 -3.215 
    ML    46    44 6    49     6     1    19    87   120  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    47    44 6    49     6     1    18    87   120  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    48    44 6    49     6     0    15    84   117  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    49    49 5    49     6     1    20    88   121  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    50    50 6    50     5     1    20    88   121  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   15 ]      6     73 C G - -
    MP    51    50 6    55     6     2    23    87   120  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML    52    50 6    55     6     1    18    85   118  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    53    50 6    55     6     1    18    85   118  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    54    50 6    55     6     0    14    82   115  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    55    55 5    55     6     1    20    86   119  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    56    56 6    56     5     1    20    86   119  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   16 ]      7     72 C G - -
    MP    57    56 6    61     6     2    21    85   118  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.856 -3.773 -2.271 -0.203 -3.042 -4.470  3.435 -3.702 -3.874  0.101 -4.273 -1.830  0.571 -4.056 -0.830 -2.814 
    ML    58    56 6    61     6     1    18    84   116  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    59    56 6    61     6     1    16    83   116  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    60    56 6    61     6     0    14    81   114  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    61    61 5    61     6     1    19    84   117  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    62    62 6    62     5     1    19    84   117  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   17 ]      8     71 g u - -
    MP    63    62 6    67     4     2    19    83   116  -4.765  -6.998  -0.102  -5.412                 -2.697 -1.788 -2.960  1.337 -3.159 -3.556  0.836 -3.099 -2.727  1.766 -1.214  2.166  0.520 -3.064 -0.980 -1.882 
    ML    64    62 6    67     4     1    17    82   115  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR    65    62 6    67     4     1    15    82   114  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D    66    62 6    67     4     0    14    80   113  -4.568  -4.250  -2.265  -0.520                 
    IL    67    67 5    67     4     1    18    83   116  -1.835  -2.518  -0.960  -5.004                  0.000  0.000  0.000  0.000 
    IR    68    68 6    68     3     1    18    83   116  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   18 ]     10      - U - - -
    ML    69    68 6    71     3     1    18    81   114  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
     D    70    68 6    71     3     0    13    79   112  -6.174  -1.687  -0.566                         
    IL    71    71 3    71     3     1    17    82   115  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   19 ]     11      - U - - -
    ML    72    71 3    74     3     1    17    80   113  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
     D    73    71 3    74     3     0    13    78   111  -6.174  -1.687  -0.566                         
    IL    74    74 3    74     3     1    16    81   114  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   20 ]     12      - A - - -
    ML    75    74 3    77     3     1    17    79   112  -7.819  -0.023  -6.474                          1.503 -1.738 -1.177 -1.240 
     D    76    74 3    77     3     0    12    77   110  -6.174  -1.687  -0.566                         
    IL    77    77 3    77     3     1    16    80   113  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   21 ]     13      - C - - -
    ML    78    77 3    80     3     1    16    78   111  -8.220  -0.021  -6.537                         -1.396  1.516 -2.205 -0.881 
     D    79    77 3    80     3     0    11    76   109  -5.620  -0.734  -1.403                         
    IL    80    80 3    80     3     1    15    78   111  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   22 ]      -     70 - C - -
    MR    81    80 3    83     3     1    16    77   110  -8.220  -0.021  -6.537                         -0.799  1.038 -1.595  0.058 
     D    82    80 3    83     3     0    10    75   108  -6.390  -1.568  -0.620                         
    IR    83    83 3    83     3     1    14    77   110  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   23 ]      -     69 - A - -
    MR    84    83 3    86     3     1    15    76   109  -8.220  -0.021  -6.537                          1.648 -2.082 -1.743 -1.597 
     D    85    83 3    86     3     0     9    74   107  -6.390  -1.568  -0.620                         
    IR    86    86 3    86     3     1    14    76   109  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   24 ]      -     68 - U - -
    MR    87    86 3    89     5     1    15    75   108  -6.968  -0.043  -6.783  -6.995  -7.887         -1.223 -1.267 -1.942  1.534 
     D    88    86 3    89     5     0     8    73   106  -5.352  -0.707  -2.978  -4.409  -2.404         
    IR    89    89 3    89     5     1    12    75   108  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   25 ]     14     67 C G - -
    MP    90    89 3    94     6     2    16    74   107  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML    91    89 3    94     6     1    10    72   105  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    92    89 3    94     6     1    10    72   105  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    93    89 3    94     6     0     6    69   102  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL    94    94 5    94     6     1    11    73   106  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR    95    95 6    95     5     1    12    73   106  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   26 ]     15     66 U A - -
    MP    96    95 6   100     6     2    15    72   105  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.898 -3.712 -3.767 -0.030 -2.775 -4.358  1.546 -3.449 -3.776  0.273 -4.163 -1.620  3.167 -4.059 -0.458 -2.627 
    ML    97    95 6   100     6     1    10    70   103  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR    98    95 6   100     6     1    10    70   103  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D    99    95 6   100     6     0     6    67   100  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   100   100 5   100     6     1    11    71   104  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   101   101 6   101     5     1    11    71   104  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   27 ]     16     65 G C - -
    MP   102   101 6   106     6     2    15    70   103  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.732 -2.590 -3.763  1.442 -4.162 -4.378  0.313 -4.046 -3.690  3.177 -4.112 -0.237 -0.013 -3.778 -1.669 -2.665 
    ML   103   101 6   106     6     1     9    68   101  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   104   101 6   106     6     1     9    68   101  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   105   101 6   106     6     0     6    65    98  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   106   106 5   106     6     1    11    69   102  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   107   107 6   107     5     1    11    69   102  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   28 ]     17     64 C G - -
    MP   108   107 6   112     6     2    14    68   101  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML   109   107 6   112     6     1     9    66    99  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   110   107 6   112     6     1     8    66    99  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   111   107 6   112     6     0     5    63    96  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   112   112 5   112     6     1    10    67   100  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   113   113 6   113     5     1    10    67   100  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   29 ]     18     63 A U - -
    MP   114   113 6   118     6     2    12    66    99  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.561 -2.654 -3.595  3.158 -3.821 -4.865  0.465 -3.651 -3.498  1.328 -4.034 -0.171  0.046 -4.090 -1.478 -2.444 
    ML   115   113 6   118     6     1     8    65    97  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   116   113 6   118     6     1     7    64    97  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   117   113 6   118     6     0     5    62    95  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   118   118 5   118     6     1     9    65    98  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   119   119 6   119     5     1     9    65    98  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   30 ]     19     62 G C - -
    MP   120   119 6   124     4     2    10    64    97  -6.791  -6.998  -0.059  -5.412                 -4.462 -2.962 -4.540  0.383 -4.839 -4.581 -0.272 -4.759 -4.139  3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 
    ML   121   119 6   124     4     1     8    63    96  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   122   119 6   124     4     1     6    63    95  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   123   119 6   124     4     0     5    61    94  -4.568  -4.250  -2.265  -0.520                 
    IL   124   124 5   124     4     1     9    64    97  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   125   125 6   125     3     1     9    64    97  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   31 ]     20      - C - - -
    ML   126   125 6   128     3     1     9    62    95  -7.819  -0.023  -6.474                         -1.396  1.516 -2.205 -0.881 
     D   127   125 6   128     3     0     4    60    93  -6.174  -1.687  -0.566                         
    IL   128   128 3   128     3     1     8    63    96  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   32 ]     21      - U - - -
    ML   129   128 3   131     3     1     8    61    94  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
     D   130   128 3   131     3     0     4    59    92  -6.174  -1.687  -0.566                         
    IL   131   131 3   131     3     1     7    62    95  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   33 ]     22      - G - - -
    ML   132   131 3   134     3     1     7    60    93  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
     D   133   131 3   134     3     0     4    58    91  -6.174  -1.687  -0.566                         
    IL   134   134 3   134     3     1     7    61    94  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   34 ]     23      - A - - -
    ML   135   134 3   137     3     1     6    59    92  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
     D   136   134 3   137     3     0     3    57    90  -6.174  -1.687  -0.566                         
    IL   137   137 3   137     3     1     6    60    93  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   35 ]     24      - U - - -
    ML   138   137 3   140     3     1     5    58    91  -7.819  -0.023  -6.474                         -1.223 -1.267 -1.942  1.534 
     D   139   137 3   140     3     0     3    56    89  -6.174  -1.687  -0.566                         
    IL   140   140 3   140     3     1     5    59    92  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   36 ]     25      - G - - -
    ML   141   140 3   143     3     1     5    57    90  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
     D   142   140 3   143     3     0     2    55    88  -6.174  -1.687  -0.566                         
    IL   143   143 3   143     3     1     5    58    91  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   37 ]     26      - A - - -
    ML   144   143 3   146     3     1     4    56    89  -8.220  -0.021  -6.537                          1.648 -2.082 -1.743 -1.597 
     D   145   143 3   146     3     0     2    55    87  -5.620  -0.734  -1.403                         
    IL   146   146 3   146     3     1     4    56    89  -1.925  -0.554  -4.164                          0.000  0.000  0.000  0.000 
                                             [ MATR   38 ]      -     61 - C - -
    MR   147   146 3   149     2     1     3    55    88  -8.181  -0.005                                 -1.396  1.516 -2.205 -0.881 
     D   148   146 3   149     2     0     2    54    87  -4.432  -0.068                                 
    IR   149   149 3   149     2     1     3    55    88  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ BIF    39 ]      -      - - - - -
     B   150   149 3   151   195     0     2    54    87                                                 
                                             [ BEGL   40 ]      -      - - - - -
     S   151   150 1   152     4     0     0    28    47  -0.047  -6.756  -6.164  -6.804                 
                                             [ MATP   41 ]     27     40 G C - -
    MP   152   151 1   156     6     2     2    28    47  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.462 -2.962 -4.540  0.383 -4.839 -4.581 -0.272 -4.759 -4.139  3.563 -4.497 -0.652 -0.665 -4.283 -2.295 -3.421 
    ML   153   151 1   156     6     1     1    27    45  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   154   151 1   156     6     1     1    26    45  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   155   151 1   156     6     0     0    24    43  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   156   156 5   156     6     1     1    28    47  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   157   157 6   157     5     1     1    27    46  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   42 ]     28     39 C G - -
    MP   158   157 6   162     6     2     2    26    45  -9.050  -8.989  -0.028  -6.843  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML   159   157 6   162     6     1     1    25    44  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   160   157 6   162     6     1     1    25    44  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   161   157 6   162     6     0     0    23    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   162   162 5   162     6     1     1    26    45  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   163   163 6   163     5     1     1    25    44  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   43 ]     29     38 U A - -
    MP   164   163 6   168     6     2     2    24    43  -9.044  -8.983  -0.022  -7.760  -8.039  -8.434 -3.869 -3.681 -3.741 -0.001 -2.756 -4.334  1.564 -3.428 -3.750  0.307 -4.139 -1.590  3.149 -4.031 -0.440 -2.604 
    ML   165   163 6   168     6     1     1    23    42  -6.324  -6.670  -1.208  -1.079  -6.520  -4.049  0.267 -0.365 -0.305  0.276 
    MR   166   163 6   168     6     1     1    23    42  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   167   163 6   168     6     0     0    22    41  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   168   168 5   168     6     1     1    24    43  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   169   169 6   169     5     1     1    23    42  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   44 ]     30     37 C G - -
    MP   170   169 6   174     4     2     2    22    41  -6.791  -6.998  -0.059  -5.412                 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML   171   169 6   174     4     1     1    23    42  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   172   169 6   174     4     1     1    22    41  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   173   169 6   174     4     0     0    21    40  -4.568  -4.250  -2.265  -0.520                 
    IL   174   174 5   174     4     1     1    24    43  -1.686  -2.369  -1.117  -4.855                  0.000  0.000  0.000  0.000 
    IR   175   175 6   175     3     1     1    23    42  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   45 ]     31      - C - - -
    ML   176   175 6   178     3     1     1    19    38  -7.819  -0.023  -6.474                         -1.396  1.516 -2.205 -0.881 
     D   177   175 6   178     3     0     0    18    37  -6.174  -1.687  -0.566                         
    IL   178   178 3   178     3     1     1    22    41  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   46 ]     32      - A - - -
    ML   179   178 3   181     3     1     1    18    36  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
     D   180   178 3   181     3     0     0    17    36  -6.174  -1.687  -0.566                         
    IL   181   181 3   181     3     1     1    21    40  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   47 ]     33      - A - - -
    ML   182   181 3   184     3     1     1    16    35  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
     D   183   181 3   184     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   184   184 3   184     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   48 ]     34      - a - - -
    ML   185   184 3   187     3     1     1    15    33  -7.819  -0.023  -6.474                          0.962 -0.927 -0.359 -0.424 
     D   186   184 3   187     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   187   187 3   187     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   49 ]     35      - A - - -
    ML   188   187 3   190     3     1     1    13    32  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
     D   189   187 3   190     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   190   190 3   190     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   50 ]     36      - A - - -
    ML   191   190 3   193     2     1     1     1     1       *   0.000                                  1.648 -2.082 -1.743 -1.597 
     D   192   190 3   193     2     0     0     0     0       *   0.000                                 
    IL   193   193 3   193     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    51 ]      -      - - - - -
     E   194   193 3    -1     0     0     0     0     0                                                 
                                             [ BEGR   52 ]      -      - - - - -
     S   195   150 1   196     3     0     0    40    73  -7.819  -0.023  -6.474                         
    IL   196   196 2   196     3     1     1    42    75  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   53 ]     41      - G - - -
    ML   197   196 2   199     3     1     1    40    73  -7.819  -0.023  -6.474                         -1.271 -2.440  1.641 -1.825 
     D   198   196 2   199     3     0     0    38    71  -6.174  -1.687  -0.566                         
    IL   199   199 3   199     3     1     1    41    74  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   54 ]     42      - A - - -
    ML   200   199 3   202     3     1     1    39    72  -7.819  -0.023  -6.474                          1.648 -2.082 -1.743 -1.597 
     D   201   199 3   202     3     0     0    37    70  -6.174  -1.687  -0.566                         
    IL   202   202 3   202     3     1     1    40    73  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   55 ]     43      - A - - -
    ML   203   202 3   205     5     1     1    38    71  -6.968  -0.043  -6.783  -6.995  -7.887          1.648 -2.082 -1.743 -1.597 
     D   204   202 3   205     5     0     0    36    69  -4.959  -0.803  -4.221  -2.596  -2.508         
    IL   205   205 3   205     5     1     1    38    71  -2.408  -0.496  -4.087  -5.920  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   56 ]     44     60 A U - -
    MP   206   205 3   210     6     2     2    37    70  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -3.561 -2.654 -3.595  3.158 -3.821 -4.865  0.465 -3.651 -3.498  1.328 -4.034 -0.171  0.046 -4.090 -1.478 -2.444 
    ML   207   205 3   210     6     1     1    35    68  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   208   205 3   210     6     1     1    35    68  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   209   205 3   210     6     0     0    32    65  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   210   210 5   210     6     1     1    36    69  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   211   211 6   211     5     1     1    36    69  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   57 ]     45     59 C G - -
    MP   212   211 6   216     6     2     2    35    68  -9.050  -8.989  -0.022  -7.765  -8.045  -8.440 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML   213   211 6   216     6     1     1    33    66  -6.250  -6.596  -1.310  -1.005  -6.446  -3.975  0.368 -0.385 -0.191  0.094 
    MR   214   211 6   216     6     1     1    33    66  -6.988  -5.717  -1.625  -5.695  -0.829  -3.908  0.368 -0.385 -0.191  0.094 
     D   215   211 6   216     6     0     0    30    63  -9.049  -7.747  -3.544  -4.226  -4.244  -0.319 
    IL   216   216 5   216     6     1     1    34    67  -2.579  -2.842  -0.760  -4.497  -5.274  -4.934  0.000  0.000  0.000  0.000 
    IR   217   217 6   217     5     1     1    34    67  -2.408  -0.496  -5.920  -4.087  -5.193          0.000  0.000  0.000  0.000 
                                             [ MATP   58 ]     46     58 C G - -
    MP   218   217 6   222     4     2     2    33    66  -3.294  -6.998  -0.206  -5.412                 -4.261 -4.139 -3.998 -0.400 -2.783 -4.447  3.451 -3.563 -4.039 -0.114 -4.329 -2.083  0.758 -4.348 -0.484 -2.889 
    ML   219   217 6   222     4     1     1    31    64  -3.758  -3.940  -0.507  -2.670                  0.368 -0.385 -0.191  0.094 
    MR   220   217 6   222     4     1     1    30    63  -4.809  -3.838  -1.706  -0.766                  0.368 -0.385 -0.191  0.094 
     D   221   217 6   222     4     0     0    29    62  -4.568  -4.250  -2.265  -0.520                 
    IL   222   222 5   222     4     1     1    35    68  -0.807  -3.667  -2.415  -2.623                  0.000  0.000  0.000  0.000 
    IR   223   223 6   223     3     1     1    23    43  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   59 ]     51      - u - - -
    ML   224   223 6   226     3     1     1    18    38  -7.690  -0.025  -6.344                          0.203 -0.679 -0.354  0.528 
     D   225   223 6   226     3     0     0    21    42  -1.234  -2.466  -1.344                         
    IL   226   226 3   226     3     1     1    22    43  -1.311  -0.849  -4.585                          0.000  0.000  0.000  0.000 
                                             [ MATL   60 ]     54      - a - - -
    ML   227   226 3   229     3     1     1    16    35  -7.819  -0.023  -6.474                          0.772 -1.070  0.068 -0.383 
     D   228   226 3   229     3     0     0    16    34  -6.174  -1.687  -0.566                         
    IL   229   229 3   229     3     1     1    20    38  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   61 ]     55      - u - - -
    ML   230   229 3   232     3     1     1    15    33  -7.819  -0.023  -6.474                          0.149 -0.323 -0.997  0.669 
     D   231   229 3   232     3     0     0    15    33  -6.174  -1.687  -0.566                         
    IL   232   232 3   232     3     1     1    19    37  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   62 ]     56      - u - - -
    ML   233   232 3   235     3     1     1    13    32  -7.819  -0.023  -6.474                         -0.263 -0.478 -1.036  0.972 
     D   234   232 3   235     3     0     0    13    32  -6.174  -1.687  -0.566                         
    IL   235   235 3   235     3     1     1    18    36  -1.442  -0.798  -4.142                          0.000  0.000  0.000  0.000 
                                             [ MATL   63 ]     57      - A - - -
    ML   236   235 3   238     2     1     1     1     1       *   0.000                                  1.475 -1.688 -1.087 -1.185 
     D   237   235 3   238     2     0     0     0     0       *   0.000                                 
    IL   238   238 3   238     2     1     1    13    28  -1.823  -0.479                                  0.000  0.000  0.000  0.000 
                                             [ END    64 ]      -      - - - - -
     E   239   238 3    -1     0     0     0     0     0                                                 
//
HMMER3/f [i1.1 | October 2013]
NAME  Hammerhead_HH9
ACC   RF02275
LENG  77
MAXL  166
ALPH  RNA
RF    no
MM    no
CONS  yes
CS    yes
MAP   yes
DATE  Fri Feb 28 01:30:53 2014
COM   [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
COM   [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM
NSEQ  33
EFFN  2.219604
CKSUM 796486396
STATS LOCAL MSV       -8.8496  0.71890
STATS LOCAL VITERBI   -9.3336  0.71890
STATS LOCAL FORWARD   -4.0471  0.71890
HMM          A        C        G        U   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31725  1.38958  1.36177  1.48394
          1.38629  1.38629  1.38629  1.38629
          0.23584  3.90062  1.66143  1.46634  0.26236  0.00000        *
      1   1.62034  1.46101  2.09577  0.80477      1 u - - :
          1.38629  1.38629  1.38629  1.38629
          0.04995  3.71472  3.71472  1.46634  0.26236  1.50249  0.25177
      2   1.61228  1.42275  2.03579  0.84644      2 u - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  0.22692  1.59448
      3   1.29816  2.02841  0.90551  1.65503      3 g - - :
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
      4   1.27128  1.88516  0.94878  1.71196      4 g - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
      5   2.39214  3.09549  0.20715  2.98743      5 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
      6   3.13217  0.25594  2.90124  2.06174      6 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
      7   2.87265  0.24622  2.80962  2.28795      7 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
      8   1.68120  2.27610  0.51345  2.18268      8 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.07418  2.97076  3.90062  0.66121  0.72613  1.09861  0.40547
      9   2.55429  2.52778  3.06936  0.22820     10 U - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     10   2.55429  2.52778  3.06936  0.22820     11 U - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     11   0.26628  2.83571  2.35745  2.52026     12 A - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     12   2.77408  0.21654  3.34930  2.33116     13 C - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     13   3.13218  0.25594  2.90125  2.06175     14 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     14   2.90343  1.85418  2.64627  0.33175     15 U - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     15   1.64887  2.63991  0.42081  2.52761     16 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     16   3.13571  0.25552  2.90290  2.06235     17 C - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     17   0.36748  2.70007  1.78040  2.63452     18 A - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     18   2.54639  3.17803  0.17945  3.11808     19 G - - (
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     19   2.77408  0.21654  3.34930  2.33116     20 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     20   2.55429  2.52778  3.06936  0.22820     21 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     21   2.63875  3.50800  0.15924  3.08351     22 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     22   0.16531  3.17973  2.90967  2.87749     23 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     23   2.55429  2.52778  3.06936  0.22820     24 U - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     24   2.63875  3.50800  0.15924  3.08351     25 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     25   0.16531  3.17973  2.90967  2.87749     26 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     26   2.55311  3.18579  0.17787  3.12896     27 G - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     27   3.14279  0.25469  2.90619  2.06356     28 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     28   2.86110  1.83249  2.61025  0.34353     29 U - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     29   3.12324  0.25699  2.89707  2.06021     30 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     30   2.77408  0.21654  3.34930  2.33116     31 C - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     31   0.16531  3.17973  2.90967  2.87749     32 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     32   0.16531  3.17973  2.90967  2.87749     33 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     33   0.66660  2.09592  1.64667  1.76667     34 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     34   0.16531  3.17973  2.90967  2.87749     35 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     35   0.16531  3.17973  2.90967  2.87749     36 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     36   2.33798  3.06863  0.22125  2.89182     37 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.05486  3.90062  3.40676  1.46634  0.26236  1.09861  0.40547
     37   0.38820  2.79614  1.67049  2.62387     38 A - - >
          1.38629  1.38629  1.38629  1.38629
          0.04185  3.88761  3.88761  1.46634  0.26236  0.79775  0.59846
     38   2.33616  3.06620  0.22181  2.88886     39 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     39   3.30407  0.21379  3.00346  2.24303     40 C - - >
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     40   2.63875  3.50800  0.15924  3.08351     41 G - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     41   0.16531  3.17973  2.90967  2.87749     42 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     42   0.16531  3.17973  2.90967  2.87749     43 A - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     43   0.36687  2.70221  1.78074  2.63767     44 A - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     44   3.14057  0.25495  2.90516  2.06318     45 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     45   3.13879  0.25516  2.90433  2.06288     46 C - - <
          1.38629  1.38629  1.38629  1.38629
          0.15593  2.08625  3.90062  1.14404  0.38350  1.09861  0.40547
     46   1.24976  1.91457  1.63202  0.99294     51 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.15593  2.08625  3.90062  0.80827  0.58992  1.09861  0.40547
     47   0.81292  2.22612  1.30636  1.72772     54 a - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     48   1.28765  1.61885  2.15581  0.89125     55 u - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     49   1.64210  1.76568  2.19860  0.64551     56 U - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     50   0.28651  2.78811  2.27473  2.46793     57 A - - _
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     51   2.33967  3.07087  0.22073  2.89456     58 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     52   2.33966  3.07086  0.22073  2.89455     59 G - - >
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     53   2.86227  2.06758  2.51261  0.30746     60 U - - >
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     54   2.77408  0.21654  3.34930  2.33116     61 C - - ,
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     55   3.32358  0.21190  3.01197  2.24680     62 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     56   2.86281  2.06764  2.51281  0.30739     63 U - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     57   2.34004  3.07136  0.22061  2.89516     64 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     58   2.76328  0.48300  2.45809  1.45077     65 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     59   0.37592  2.83207  1.69132  2.65672     66 A - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     60   2.34367  3.07620  0.21949  2.90108     67 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     61   2.55429  2.52778  3.06936  0.22820     68 U - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     62   0.16531  3.17973  2.90967  2.87749     69 A - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     63   2.14420  0.55656  2.71929  1.41166     70 C - - -
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     64   2.39469  1.59253  1.87945  0.59291     71 U - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     65   2.53045  2.97714  0.20945  2.84031     72 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     66   2.33999  3.07129  0.22063  2.89508     73 G - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     67   3.20820  0.25953  2.92763  2.00521     74 C - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     68   1.98104  1.14215  1.62238  1.06273     75 u - - )
          1.38629  1.38629  1.38629  1.38629
          0.04130  3.90062  3.90062  1.46634  0.26236  1.09861  0.40547
     69   1.61663  2.00825  1.87483  0.66586     76 U - - :
          1.38629  1.38629  1.38629  1.38629
          0.19731  3.90062  1.83991  1.46634  0.26236  1.09861  0.40547
     70   0.81558  2.17566  1.32970  1.71742     77 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
     71   0.81612  1.82472  1.79275  1.46927     78 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
     72   1.34010  1.90825  1.16493  1.28051     79 g - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
     73   0.90336  1.74956  1.59163  1.52624     80 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
     74   1.18139  1.49660  1.80689  1.18714     81 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.04811  3.75142  3.75142  1.46634  0.26236  2.28762  0.10704
     75   1.10246  1.68127  1.41247  1.43435     82 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.15306  3.75142  2.13335  1.46634  0.26236  2.28762  0.10704
     76   1.27283  1.40257  1.54710  1.34272     83 a - - :
          1.38629  1.38629  1.38629  1.38629
          0.05329  3.65165  3.65165  1.46634  0.26236  2.63151  0.07469
     77   1.34601  1.64433  2.07238  0.86584     84 u - - :
          1.38629  1.38629  1.38629  1.38629
          0.49277  0.94400        *  0.13173  2.09216  0.00000        *
//