Mercurial > repos > rnateam > hmmv

comparison test-data/tRNA.hmm @ 0:159092b83639 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv commit 3bc676ca60e837f8aca261d0b7860128b3474a5c
author rnateam
date Fri, 20 Oct 2017 04:29:03 -0400
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comparison
equal deleted inserted replaced
-1:000000000000 0:159092b83639
1 HMMER3/f [i1.1 | October 2013]
2 NAME tRNA
3 ACC RF00005
4 LENG 71
5 MAXL 253
6 ALPH RNA
7 RF no
8 MM no
9 CONS yes
10 CS yes
11 MAP yes
12 DATE Tue Mar 18 15:30:04 2014
13 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED
14 NSEQ 954
15 EFFN 559.992432
16 CKSUM 1403477983
17 STATS LOCAL MSV -9.0828 0.73401
18 STATS LOCAL VITERBI -9.6771 0.73401
19 STATS LOCAL FORWARD -2.6167 0.73401
20 HMM A C G U
21 m->m m->i m->d i->m i->i d->m d->d
22 COMPO 1.34376 1.54626 1.34829 1.32272
23 1.38629 1.38629 1.38629 1.38629
24 0.01089 9.16555 4.53501 1.46634 0.26236 0.00000 *
25 1 1.77738 2.48413 0.40741 2.49918 1 G - - (
26 1.38629 1.38629 1.38629 1.38629
27 0.00021 9.15487 9.15487 1.46634 0.26236 0.01931 3.95671
28 2 1.70723 1.28195 0.88318 2.05828 2 g - - (
29 1.38629 1.38629 1.38629 1.38629
30 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
31 3 1.16771 1.50075 1.31207 1.62608 3 a - - (
32 1.38629 1.38629 1.38629 1.38629
33 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
34 4 1.45971 1.75541 0.94997 1.56969 4 g - - (
35 1.38629 1.38629 1.38629 1.38629
36 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
37 5 0.99705 1.64839 1.41564 1.63013 5 a - - (
38 1.38629 1.38629 1.38629 1.38629
39 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
40 6 1.62605 1.74147 1.35530 0.99381 6 u - - (
41 1.38629 1.38629 1.38629 1.38629
42 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
43 7 0.91594 3.16623 1.01357 1.63590 7 a - - (
44 1.38629 1.38629 1.38629 1.38629
45 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
46 8 2.66516 4.88171 3.01992 0.13465 8 U - - ,
47 1.38629 1.38629 1.38629 1.38629
48 0.03342 3.68933 4.84310 0.00835 4.78975 1.09861 0.40547
49 9 0.58939 3.25595 1.00776 3.17602 10 A - - ,
50 1.38629 1.38629 1.38629 1.38629
51 0.02924 3.55044 9.15774 0.00733 4.92001 0.02619 3.65549
52 10 2.41169 2.38509 0.28093 2.76190 12 G - - <
53 1.38629 1.38629 1.38629 1.38629
54 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
55 11 3.26023 0.54810 2.54667 1.18668 13 C - - <
56 1.38629 1.38629 1.38629 1.38629
57 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
58 12 2.15431 1.47701 1.82444 0.70443 14 u - - <
59 1.38629 1.38629 1.38629 1.38629
60 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
61 13 1.60140 1.50019 1.39889 1.11344 15 u - - <
62 1.38629 1.38629 1.38629 1.38629
63 0.00210 9.16555 6.21942 1.46634 0.26236 1.09861 0.40547
64 14 0.13193 5.26257 3.22617 2.54198 16 A - - _
65 1.38629 1.38629 1.38629 1.38629
66 0.00916 9.16366 4.70900 1.46634 0.26236 3.04606 0.04871
67 15 0.89567 3.14554 0.79030 2.35479 17 g - - _
68 1.38629 1.38629 1.38629 1.38629
69 0.17992 9.15472 1.80452 1.46634 0.26236 4.66400 0.00947
70 16 1.81826 1.59646 3.52093 0.50169 18 U - - _
71 1.38629 1.38629 1.38629 1.38629
72 0.48849 1.02501 3.58788 0.29781 1.35652 0.17366 1.83622
73 17 2.18421 3.21803 0.23359 2.88757 22 G - - _
74 1.38629 1.38629 1.38629 1.38629
75 0.01313 9.11400 4.34765 1.46634 0.26236 6.18099 0.00207
76 18 2.72437 3.05446 0.23471 2.33861 23 G - - _
77 1.38629 1.38629 1.38629 1.38629
78 0.16612 9.10109 1.87766 1.46634 0.26236 6.39686 0.00167
79 19 2.54081 1.97700 3.62026 0.27980 24 U - - _
80 1.38629 1.38629 1.38629 1.38629
81 0.84547 0.56328 6.64183 0.37133 1.17060 0.01129 4.48982
82 20 0.20389 3.95681 2.45766 2.52965 28 A - - _
83 1.38629 1.38629 1.38629 1.38629
84 0.00021 9.16251 9.16251 1.46634 0.26236 0.06450 2.77317
85 21 0.67070 3.60549 1.12770 1.98271 29 A - - >
86 1.38629 1.38629 1.38629 1.38629
87 0.00101 9.16555 7.00724 1.46634 0.26236 1.09861 0.40547
88 22 0.74509 1.80409 1.36106 2.26054 30 a - - >
89 1.38629 1.38629 1.38629 1.38629
90 0.00021 9.16475 9.16475 1.46634 0.26236 0.20786 1.67302
91 23 1.27379 2.51619 0.51274 3.20372 31 G - - >
92 1.38629 1.38629 1.38629 1.38629
93 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
94 24 2.96340 0.43847 2.29770 1.59531 32 C - - >
95 1.38629 1.38629 1.38629 1.38629
96 0.01002 9.16555 4.61878 1.46634 0.26236 1.09861 0.40547
97 25 0.88499 3.59117 0.81932 2.12876 33 g - - ,
98 1.38629 1.38629 1.38629 1.38629
99 0.02263 3.80472 9.15574 0.00946 4.66544 0.02098 3.87461
100 26 1.75309 1.15243 1.97170 0.98974 35 u - - <
101 1.38629 1.38629 1.38629 1.38629
102 0.00979 4.64168 9.16555 0.02155 3.84793 1.09861 0.40547
103 27 1.85437 0.99657 2.35852 0.96826 37 u - - <
104 1.38629 1.38629 1.38629 1.38629
105 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
106 28 1.30168 2.18037 0.98968 1.41375 38 g - - <
107 1.38629 1.38629 1.38629 1.38629
108 0.00102 9.16555 6.99298 1.46634 0.26236 1.09861 0.40547
109 29 1.80997 1.88357 0.43335 3.32526 39 G - - <
110 1.38629 1.38629 1.38629 1.38629
111 0.00088 9.16474 7.15852 1.46634 0.26236 0.20520 1.68462
112 30 0.90900 1.72612 1.56959 1.55605 40 a - - <
113 1.38629 1.38629 1.38629 1.38629
114 0.00021 9.16488 9.16488 1.46634 0.26236 0.23822 1.55130
115 31 3.65408 0.50544 4.76325 1.01518 41 C - - _
116 1.38629 1.38629 1.38629 1.38629
117 0.01205 4.43341 9.16555 0.01752 4.05299 1.09861 0.40547
118 32 9.00018 3.83708 9.65323 0.02198 43 U - - _
119 1.38629 1.38629 1.38629 1.38629
120 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
121 33 2.93223 1.86700 1.05683 0.81063 44 u - - _
122 1.38629 1.38629 1.38629 1.38629
123 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
124 34 1.20540 1.40761 1.57657 1.39023 45 a - - _
125 1.38629 1.38629 1.38629 1.38629
126 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
127 35 1.01944 1.69593 1.76006 1.25969 46 a - - _
128 1.38629 1.38629 1.38629 1.38629
129 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
130 36 0.22981 5.66672 1.63533 4.96602 47 A - - _
131 1.38629 1.38629 1.38629 1.38629
132 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
133 37 0.31894 1.97853 3.29279 2.32632 48 A - - _
134 1.38629 1.38629 1.38629 1.38629
135 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
136 38 1.75705 1.68372 1.51619 0.86224 49 u - - >
137 1.38629 1.38629 1.38629 1.38629
138 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
139 39 3.69794 0.50242 1.84119 1.55337 50 C - - >
140 1.38629 1.38629 1.38629 1.38629
141 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
142 40 1.42184 0.98012 2.20563 1.29725 51 c - - >
143 1.38629 1.38629 1.38629 1.38629
144 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
145 41 1.07286 2.55525 0.94794 1.64632 52 g - - >
146 1.38629 1.38629 1.38629 1.38629
147 0.01512 4.62725 5.25418 0.02125 3.86212 1.09861 0.40547
148 42 1.07209 2.65235 1.14499 1.31306 54 a - - >
149 1.38629 1.38629 1.38629 1.38629
150 0.00021 9.16042 9.16042 1.46634 0.26236 0.03925 3.25747
151 43 0.80151 1.95751 2.49068 1.11692 55 a - - ,
152 1.38629 1.38629 1.38629 1.38629
153 0.00354 9.16555 5.67532 1.46634 0.26236 1.09861 0.40547
154 44 1.18719 3.11026 0.79210 1.62231 56 g - - ,
155 1.38629 1.38629 1.38629 1.38629
156 0.35483 1.22280 5.44788 2.52888 0.08311 0.05920 2.85628
157 45 0.94160 3.32903 0.90358 1.77754 81 g - - ,
158 1.38629 1.38629 1.38629 1.38629
159 0.48754 0.95525 6.76795 0.05391 2.94730 0.04759 3.06879
160 46 2.80272 0.69545 2.93113 0.94890 85 c - - ,
161 1.38629 1.38629 1.38629 1.38629
162 0.00021 9.16451 9.16451 1.46634 0.26236 0.16775 1.86801
163 47 1.22469 2.17415 0.63431 2.77834 86 G - - <
164 1.38629 1.38629 1.38629 1.38629
165 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
166 48 1.42620 1.32668 1.62225 1.21413 87 u - - <
167 1.38629 1.38629 1.38629 1.38629
168 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
169 49 1.18971 2.17674 0.87232 1.80607 88 g - - <
170 1.38629 1.38629 1.38629 1.38629
171 0.01813 4.16800 5.99901 0.01345 4.31515 1.09861 0.40547
172 50 1.54892 3.64681 0.35215 2.84261 90 G - - <
173 1.38629 1.38629 1.38629 1.38629
174 0.05447 9.16317 2.93921 1.46634 0.26236 3.24748 0.03965
175 51 2.91904 3.69075 0.10557 3.85142 91 G - - <
176 1.38629 1.38629 1.38629 1.38629
177 0.01926 9.10892 3.96541 1.46634 0.26236 0.47025 0.98042
178 52 2.58713 3.30063 4.12158 0.13733 92 U - - _
179 1.38629 1.38629 1.38629 1.38629
180 0.01335 4.33098 9.12642 0.01645 4.11544 0.02336 3.76823
181 53 2.73380 3.55136 3.10063 0.14929 94 U - - _
182 1.38629 1.38629 1.38629 1.38629
183 0.00117 9.16487 6.84764 1.46634 0.26236 0.23519 1.56264
184 54 1.91909 0.28976 3.93473 2.46202 95 C - - _
185 1.38629 1.38629 1.38629 1.38629
186 0.00089 9.16459 7.15486 1.46634 0.26236 2.49712 0.08591
187 55 0.86370 3.18439 0.73315 2.87167 96 g - - _
188 1.38629 1.38629 1.38629 1.38629
189 0.02538 3.85434 5.55452 0.00986 4.62431 0.11370 2.23049
190 56 0.10751 3.36842 3.61643 3.20375 98 A - - _
191 1.38629 1.38629 1.38629 1.38629
192 0.02690 9.16179 3.63288 1.46634 0.26236 3.66212 0.02601
193 57 0.67201 2.24039 1.88732 1.46350 99 A - - _
194 1.38629 1.38629 1.38629 1.38629
195 0.10924 3.26538 2.72866 0.25713 1.48400 3.15055 0.04377
196 58 3.03220 2.08118 4.58750 0.20232 102 U - - _
197 1.38629 1.38629 1.38629 1.38629
198 0.02872 9.06899 3.56869 1.46634 0.26236 0.44699 1.02041
199 59 3.62885 0.09251 4.76246 2.93245 103 C - - >
200 1.38629 1.38629 1.38629 1.38629
201 0.00022 9.10519 9.10519 1.46634 0.26236 0.04490 3.12561
202 60 2.82384 0.36562 3.60560 1.51557 104 C - - >
203 1.38629 1.38629 1.38629 1.38629
204 0.00021 9.16317 9.16317 1.46634 0.26236 0.08093 2.55433
205 61 1.98165 0.93537 2.03138 1.08305 105 c - - >
206 1.38629 1.38629 1.38629 1.38629
207 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
208 62 1.41052 1.88381 1.22158 1.17374 106 u - - >
209 1.38629 1.38629 1.38629 1.38629
210 0.01727 4.07376 9.16555 0.01225 4.40843 1.09861 0.40547
211 63 2.92352 0.85192 2.12328 0.91624 108 c - - >
212 1.38629 1.38629 1.38629 1.38629
213 0.01067 4.63067 7.04730 0.02132 3.85875 1.09861 0.40547
214 64 1.64302 1.08197 3.15743 0.85533 110 u - - )
215 1.38629 1.38629 1.38629 1.38629
216 0.00021 9.16479 9.16479 1.46634 0.26236 0.21550 1.64060
217 65 1.19333 1.55287 1.48082 1.35596 111 a - - )
218 1.38629 1.38629 1.38629 1.38629
219 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
220 66 1.77201 1.52940 1.50476 0.93835 112 u - - )
221 1.38629 1.38629 1.38629 1.38629
222 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
223 67 1.68524 1.08580 1.59640 1.29337 113 c - - )
224 1.38629 1.38629 1.38629 1.38629
225 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
226 68 1.70095 1.44882 1.44666 1.05760 114 u - - )
227 1.38629 1.38629 1.38629 1.38629
228 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
229 69 2.07909 0.95836 1.28069 1.54370 115 c - - )
230 1.38629 1.38629 1.38629 1.38629
231 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547
232 70 2.48394 0.54896 2.55295 1.34252 116 C - - )
233 1.38629 1.38629 1.38629 1.38629
234 0.02417 9.16555 3.73919 1.46634 0.26236 1.09861 0.40547
235 71 0.68084 2.78597 1.26674 1.89452 118 A - - :
236 1.38629 1.38629 1.38629 1.38629
237 0.00011 9.14149 * 1.46634 0.26236 0.00000 *
238 //