Mercurial > repos > rnateam > hmmv
diff test-data/tRNA.hmm @ 0:159092b83639 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/cmv commit 3bc676ca60e837f8aca261d0b7860128b3474a5c
| author | rnateam |
|---|---|
| date | Fri, 20 Oct 2017 04:29:03 -0400 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/tRNA.hmm Fri Oct 20 04:29:03 2017 -0400 @@ -0,0 +1,238 @@ +HMMER3/f [i1.1 | October 2013] +NAME tRNA +ACC RF00005 +LENG 71 +MAXL 253 +ALPH RNA +RF no +MM no +CONS yes +CS yes +MAP yes +DATE Tue Mar 18 15:30:04 2014 +COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED +NSEQ 954 +EFFN 559.992432 +CKSUM 1403477983 +STATS LOCAL MSV -9.0828 0.73401 +STATS LOCAL VITERBI -9.6771 0.73401 +STATS LOCAL FORWARD -2.6167 0.73401 +HMM A C G U + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.34376 1.54626 1.34829 1.32272 + 1.38629 1.38629 1.38629 1.38629 + 0.01089 9.16555 4.53501 1.46634 0.26236 0.00000 * + 1 1.77738 2.48413 0.40741 2.49918 1 G - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.15487 9.15487 1.46634 0.26236 0.01931 3.95671 + 2 1.70723 1.28195 0.88318 2.05828 2 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 3 1.16771 1.50075 1.31207 1.62608 3 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 4 1.45971 1.75541 0.94997 1.56969 4 g - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 5 0.99705 1.64839 1.41564 1.63013 5 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 6 1.62605 1.74147 1.35530 0.99381 6 u - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 7 0.91594 3.16623 1.01357 1.63590 7 a - - ( + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 8 2.66516 4.88171 3.01992 0.13465 8 U - - , + 1.38629 1.38629 1.38629 1.38629 + 0.03342 3.68933 4.84310 0.00835 4.78975 1.09861 0.40547 + 9 0.58939 3.25595 1.00776 3.17602 10 A - - , + 1.38629 1.38629 1.38629 1.38629 + 0.02924 3.55044 9.15774 0.00733 4.92001 0.02619 3.65549 + 10 2.41169 2.38509 0.28093 2.76190 12 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 11 3.26023 0.54810 2.54667 1.18668 13 C - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 12 2.15431 1.47701 1.82444 0.70443 14 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 13 1.60140 1.50019 1.39889 1.11344 15 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00210 9.16555 6.21942 1.46634 0.26236 1.09861 0.40547 + 14 0.13193 5.26257 3.22617 2.54198 16 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00916 9.16366 4.70900 1.46634 0.26236 3.04606 0.04871 + 15 0.89567 3.14554 0.79030 2.35479 17 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.17992 9.15472 1.80452 1.46634 0.26236 4.66400 0.00947 + 16 1.81826 1.59646 3.52093 0.50169 18 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.48849 1.02501 3.58788 0.29781 1.35652 0.17366 1.83622 + 17 2.18421 3.21803 0.23359 2.88757 22 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01313 9.11400 4.34765 1.46634 0.26236 6.18099 0.00207 + 18 2.72437 3.05446 0.23471 2.33861 23 G - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.16612 9.10109 1.87766 1.46634 0.26236 6.39686 0.00167 + 19 2.54081 1.97700 3.62026 0.27980 24 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.84547 0.56328 6.64183 0.37133 1.17060 0.01129 4.48982 + 20 0.20389 3.95681 2.45766 2.52965 28 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16251 9.16251 1.46634 0.26236 0.06450 2.77317 + 21 0.67070 3.60549 1.12770 1.98271 29 A - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00101 9.16555 7.00724 1.46634 0.26236 1.09861 0.40547 + 22 0.74509 1.80409 1.36106 2.26054 30 a - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16475 9.16475 1.46634 0.26236 0.20786 1.67302 + 23 1.27379 2.51619 0.51274 3.20372 31 G - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 24 2.96340 0.43847 2.29770 1.59531 32 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01002 9.16555 4.61878 1.46634 0.26236 1.09861 0.40547 + 25 0.88499 3.59117 0.81932 2.12876 33 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.02263 3.80472 9.15574 0.00946 4.66544 0.02098 3.87461 + 26 1.75309 1.15243 1.97170 0.98974 35 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00979 4.64168 9.16555 0.02155 3.84793 1.09861 0.40547 + 27 1.85437 0.99657 2.35852 0.96826 37 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 28 1.30168 2.18037 0.98968 1.41375 38 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00102 9.16555 6.99298 1.46634 0.26236 1.09861 0.40547 + 29 1.80997 1.88357 0.43335 3.32526 39 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00088 9.16474 7.15852 1.46634 0.26236 0.20520 1.68462 + 30 0.90900 1.72612 1.56959 1.55605 40 a - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16488 9.16488 1.46634 0.26236 0.23822 1.55130 + 31 3.65408 0.50544 4.76325 1.01518 41 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01205 4.43341 9.16555 0.01752 4.05299 1.09861 0.40547 + 32 9.00018 3.83708 9.65323 0.02198 43 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 33 2.93223 1.86700 1.05683 0.81063 44 u - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 34 1.20540 1.40761 1.57657 1.39023 45 a - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 35 1.01944 1.69593 1.76006 1.25969 46 a - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 36 0.22981 5.66672 1.63533 4.96602 47 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 37 0.31894 1.97853 3.29279 2.32632 48 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 38 1.75705 1.68372 1.51619 0.86224 49 u - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 39 3.69794 0.50242 1.84119 1.55337 50 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 40 1.42184 0.98012 2.20563 1.29725 51 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 41 1.07286 2.55525 0.94794 1.64632 52 g - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01512 4.62725 5.25418 0.02125 3.86212 1.09861 0.40547 + 42 1.07209 2.65235 1.14499 1.31306 54 a - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16042 9.16042 1.46634 0.26236 0.03925 3.25747 + 43 0.80151 1.95751 2.49068 1.11692 55 a - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00354 9.16555 5.67532 1.46634 0.26236 1.09861 0.40547 + 44 1.18719 3.11026 0.79210 1.62231 56 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.35483 1.22280 5.44788 2.52888 0.08311 0.05920 2.85628 + 45 0.94160 3.32903 0.90358 1.77754 81 g - - , + 1.38629 1.38629 1.38629 1.38629 + 0.48754 0.95525 6.76795 0.05391 2.94730 0.04759 3.06879 + 46 2.80272 0.69545 2.93113 0.94890 85 c - - , + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16451 9.16451 1.46634 0.26236 0.16775 1.86801 + 47 1.22469 2.17415 0.63431 2.77834 86 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 48 1.42620 1.32668 1.62225 1.21413 87 u - - < + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 49 1.18971 2.17674 0.87232 1.80607 88 g - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01813 4.16800 5.99901 0.01345 4.31515 1.09861 0.40547 + 50 1.54892 3.64681 0.35215 2.84261 90 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.05447 9.16317 2.93921 1.46634 0.26236 3.24748 0.03965 + 51 2.91904 3.69075 0.10557 3.85142 91 G - - < + 1.38629 1.38629 1.38629 1.38629 + 0.01926 9.10892 3.96541 1.46634 0.26236 0.47025 0.98042 + 52 2.58713 3.30063 4.12158 0.13733 92 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.01335 4.33098 9.12642 0.01645 4.11544 0.02336 3.76823 + 53 2.73380 3.55136 3.10063 0.14929 94 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00117 9.16487 6.84764 1.46634 0.26236 0.23519 1.56264 + 54 1.91909 0.28976 3.93473 2.46202 95 C - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.00089 9.16459 7.15486 1.46634 0.26236 2.49712 0.08591 + 55 0.86370 3.18439 0.73315 2.87167 96 g - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02538 3.85434 5.55452 0.00986 4.62431 0.11370 2.23049 + 56 0.10751 3.36842 3.61643 3.20375 98 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02690 9.16179 3.63288 1.46634 0.26236 3.66212 0.02601 + 57 0.67201 2.24039 1.88732 1.46350 99 A - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.10924 3.26538 2.72866 0.25713 1.48400 3.15055 0.04377 + 58 3.03220 2.08118 4.58750 0.20232 102 U - - _ + 1.38629 1.38629 1.38629 1.38629 + 0.02872 9.06899 3.56869 1.46634 0.26236 0.44699 1.02041 + 59 3.62885 0.09251 4.76246 2.93245 103 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00022 9.10519 9.10519 1.46634 0.26236 0.04490 3.12561 + 60 2.82384 0.36562 3.60560 1.51557 104 C - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16317 9.16317 1.46634 0.26236 0.08093 2.55433 + 61 1.98165 0.93537 2.03138 1.08305 105 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 62 1.41052 1.88381 1.22158 1.17374 106 u - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01727 4.07376 9.16555 0.01225 4.40843 1.09861 0.40547 + 63 2.92352 0.85192 2.12328 0.91624 108 c - - > + 1.38629 1.38629 1.38629 1.38629 + 0.01067 4.63067 7.04730 0.02132 3.85875 1.09861 0.40547 + 64 1.64302 1.08197 3.15743 0.85533 110 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16479 9.16479 1.46634 0.26236 0.21550 1.64060 + 65 1.19333 1.55287 1.48082 1.35596 111 a - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 66 1.77201 1.52940 1.50476 0.93835 112 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 67 1.68524 1.08580 1.59640 1.29337 113 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 68 1.70095 1.44882 1.44666 1.05760 114 u - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 69 2.07909 0.95836 1.28069 1.54370 115 c - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.00021 9.16555 9.16555 1.46634 0.26236 1.09861 0.40547 + 70 2.48394 0.54896 2.55295 1.34252 116 C - - ) + 1.38629 1.38629 1.38629 1.38629 + 0.02417 9.16555 3.73919 1.46634 0.26236 1.09861 0.40547 + 71 0.68084 2.78597 1.26674 1.89452 118 A - - : + 1.38629 1.38629 1.38629 1.38629 + 0.00011 9.14149 * 1.46634 0.26236 0.00000 * +//