Mercurial > repos > rnateam > intarna
comparison intarna.xml @ 15:0377acb3f91b draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit ada306cd8015e3b47f0446475d773cd78ac6a49b
| author | bgruening |
|---|---|
| date | Thu, 25 Jan 2024 13:12:23 +0000 |
| parents | d3db19200b24 |
| children |
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| 14:d3db19200b24 | 15:0377acb3f91b |
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| 1 <tool id="intarna" name="IntaRNA" version="3.3.2"> | 1 <tool id="intarna" name="IntaRNA" version="3.4.0"> |
| 2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> | 2 <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> |
| 3 <macros> | 3 <macros> |
| 4 <macro name="query_macro"> | 4 <macro name="query_macro"> |
| 5 <param argument="--query" format="fasta" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" label="Query sequence(s)" name="query" type="data" /> | 5 <param argument="--query" format="fasta" help="Sequences have to use IUPAC nucleotide encoding. File must be in FASTA format" label="Query sequence(s)" name="query" type="data" /> |
| 6 <conditional name="qAcc_cond"> | 6 <conditional name="qAcc_cond"> |
| 66 </param> | 66 </param> |
| 67 <param argument="--outPairwise" checked="false" falsevalue="" help="" label="Enables pairwise sequence processing, i.e. interactions are only computed for each corresponding query-target pair (same index) instead of all-vs-all" truevalue="--outPairwise" type="boolean" /> | 67 <param argument="--outPairwise" checked="false" falsevalue="" help="" label="Enables pairwise sequence processing, i.e. interactions are only computed for each corresponding query-target pair (same index) instead of all-vs-all" truevalue="--outPairwise" type="boolean" /> |
| 68 </macro> | 68 </macro> |
| 69 </macros> | 69 </macros> |
| 70 <requirements> | 70 <requirements> |
| 71 <requirement type="package" version="3.3.2">intarna</requirement> | 71 <requirement type="package" version="3.4.0">intarna</requirement> |
| 72 </requirements> | 72 </requirements> |
| 73 <version_command>IntaRNA --version</version_command> | 73 <version_command>IntaRNA --version</version_command> |
| 74 <command detect_errors="exit_code"><![CDATA[ | 74 <command detect_errors="exit_code"><![CDATA[ |
| 75 | 75 |
| 76 IntaRNA | 76 IntaRNA |