diff intarna.xml @ 2:4616bc52f157 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit d9a176f273a0d50e10b3bd81884436d4974e8c70-dirty

--- a/intarna.xml	Thu Sep 07 08:47:05 2017 -0400
+++ b/intarna.xml	Thu Sep 07 17:55:09 2017 -0400
@@ -13,10 +13,10 @@
                 <when value="N"/>
                 <when value="C"/>
                 <when value="P">
-                    <param argument="--qAccFile" format="text" type="data" label="Accessibility computation" help="" />
+                    <param argument="--qAccFile" format="txt" type="data" label="Accessibility computation" help="" />
                 </when>
                 <when value="E">
-                    <param argument="--qAccFile" format="text" type="data" label="Accessibility computation" help="" />
+                    <param argument="--qAccFile" format="txt" type="data" label="Accessibility computation" help="" />
                 </when>
             </conditional>
             <param argument="--qAccW" type="integer" value="150" min="0" max="99999"
@@ -36,10 +36,10 @@
                 <when value="N"/>
                 <when value="C"/>
                 <when value="P">
-                    <param argument="--tAccFile" format="text" type="data" label="The file to be parsed" help="... for accessibility computation" />
+                    <param argument="--tAccFile" format="txt" type="data" label="The file to be parsed" help="... for accessibility computation" />
                 </when>
                 <when value="E">
-                    <param argument="--tAccFile" format="text" type="data" label="Accessibility computation" help="" />
+                    <param argument="--tAccFile" format="txt" type="data" label="Accessibility computation" help="" />
                 </when>
             </conditional>
             <param argument="--tAccW" type="integer" value="150" min="0" max="99999"
@@ -319,12 +319,12 @@
         </conditional>
     </inputs>
     <outputs>
-        <data  name="outfile" format="text" label="IntaRNA on ${on_string}">
+        <data  name="outfile" format="txt" label="IntaRNA on ${on_string}">
             <change_format>
                 <when input="advancedOptions.output.outMode" value="C" format="tabular" />
             </change_format>
         </data>
-        <data name="outQAccFile" format="text" label="Query's ED values, on ${on_string}">
+        <data name="outQAccFile" format="txt" label="Query's ED values, on ${on_string}">
             <filter>
                 ((
                 advancedOptions['advancedSelector'] == "advanced" and
@@ -333,7 +333,7 @@
                 ))
             </filter>
         </data>
-        <data name="outTAccFile" format="text" label="Target's ED values, on ${on_string}">
+        <data name="outTAccFile" format="txt" label="Target's ED values, on ${on_string}">
             <filter>
                 ((
                 advancedOptions['advancedSelector'] == "advanced" and
@@ -342,7 +342,7 @@
                 ))
             </filter>
         </data>
-        <data name="outQPuFile" format="text" label="Query's unpaired probabilities used for ED values, on ${on_string}">
+        <data name="outQPuFile" format="txt" label="Query's unpaired probabilities used for ED values, on ${on_string}">
             <filter>
                 ((
                 advancedOptions['advancedSelector'] == "advanced" and
@@ -351,7 +351,7 @@
                 ))
             </filter>
         </data>
-        <data name="outTPuFile" format="text" label="Target's unpaired probabilities used for ED values, on ${on_string}">
+        <data name="outTPuFile" format="txt" label="Target's unpaired probabilities used for ED values, on ${on_string}">
             <filter>
                 ((
                 advancedOptions['advancedSelector'] == "advanced" and