annotate test-data/haca.snoRNA-default.stdout @ 2:94b0468f0db8 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 80c721dcfe02a2b8baf8e2c64b76cbcd71b23d86

mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0
Copyright Sebastian Will

Compute pair probs ...
Compute pairwise alignments ... 
Perform progressive alignment ...



ACA7               ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGG
ACA30              UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGU
ACA5               UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGC
ACA59              GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCU
#A1                ............................................................
#A2                ............................................................

ACA7               AGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG
ACA30              GCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG
ACA5               UGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG
ACA59              GGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
#A1                ....AAAAAA..................................................
#A2                ....123456..................................................

ACA7               AUUGGA--AGA---CACU-CUGCG-----ACA
ACA30              CAACUG--UCA---CUCA-AUGGG-----ACA
ACA5               GGAUAA--AUU---UGGU-UACAG-----ACA
ACA59              ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
#A1                .............................BBB
#A2                .............................123

alifold            .((((((((........((((.(((((((......))))))).))))......))..)))
                   ))).............((((((.....((.....((((((((((((.....)))))))))
                   )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)