annotate test-data/haca.snoRNA-default.stdout @ 4:6e20ad2c8752 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
author bgruening
date Mon, 19 Aug 2024 18:52:41 +0000
parents 7554c0df9139
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 2.0.1
0
8414fea2a6fd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 1d1d9aac8cb96d043be07f2e4059baa3b05c2afc
rnateam
parents:
diff changeset
2
8414fea2a6fd planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 1d1d9aac8cb96d043be07f2e4059baa3b05c2afc
rnateam
parents:
diff changeset
3
4
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
4 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAGGCACCCAUUC-CAUUCCCAGCUUGCUCCGUAGCUGGCG
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
5 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG--AUUGUAUU-CUUGCCCUGGG---AUUAUACCAGUGG
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
6 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-----UCAUG-GGCCCUGUUCCUGUGUCCCAGGCUCAG
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
7 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG--CCCAUGGGUGA-CCCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
8 #A1 ................................................................AAAAAA..................................................
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
9 #A2 ................................................................123456..................................................
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
10
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
11 ACA7 AUUGGA-----AGACACU-CUGCG-----ACA
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
12 ACA30 CAACUG-----UCACUCA-AUGGG-----ACA
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
13 ACA5 GGAUAA-----AUUUGGU-UACAG-----ACA
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
14 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
15 #A1 .............................BBB
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
16 #A2 .............................123
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
17
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
18 alifold .((((((..........((((..(((((........)))))..))))..........)))))).............((((((.............((((((((..........)))).))
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
19 ))..............)).))))......... (-53.08 = -26.63 + -26.46)
6e20ad2c8752 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
bgruening
parents: 3
diff changeset
20 Results written to target directory /tmp/tmpstsz4a83/job_working_directory/000/4/working/mlocarna_results.