Mercurial > repos > rnateam > locarna_multiple

comparison test-data/haca.snoRNA-default.stdout @ 3:7554c0df9139 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 10ccc47885ce71e602d66e157bd475f1facbd042
author bgruening
date Mon, 05 Dec 2022 14:28:49 +0000
parents 8414fea2a6fd
children 6e20ad2c8752
comparison
equal deleted inserted replaced
2:94b0468f0db8 3:7554c0df9139
4 Compute pair probs ... 4 Compute pair probs ...
5 Compute pairwise alignments ... 5 Compute pairwise alignments ...
6 Perform progressive alignment ... 6 Perform progressive alignment ...
7 7
8 8
9 9 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............(((((((...((......((((((((((((.....)))))))))
10 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGG 10 ))).........)).))).))))......... (-62.29 = -34.50 + -27.79)
11 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGU
12 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGC
13 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG-CCCAUGGGUGAC--CCU
14 #A1 ............................................................
15 #A2 ............................................................
16
17 ACA7 AGGGAAAGCAAGCCUGGCAGAG-GCACCCAUUCCAUUCCCAGCUUGCUCCGUAGCUGGCG
18 ACA30 GCUGAGAGAAAAC---CC-UUG---AUUGUAUUCUUGCCCUGGG---AUUAUACCAGUGG
19 ACA5 UGCCACAGAAACAC--UGUGAC-UCAUGG-----GCCCUGUUCCUGUGUCCCAGGCUCAG
20 ACA59 GGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA
21 #A1 ....AAAAAA..................................................
22 #A2 ....123456..................................................
23
24 ACA7 AUUGGA--AGA---CACU-CUGCG-----ACA
25 ACA30 CAACUG--UCA---CUCA-AUGGG-----ACA
26 ACA5 GGAUAA--AUU---UGGU-UACAG-----ACA
27 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA
28 #A1 .............................BBB
29 #A2 .............................123
30
31 alifold .((((((((........((((.(((((((......))))))).))))......))..)))
32 ))).............((((((.....((.....((((((((((((.....)))))))))
33 )))......)).....)).))))......... (-61.69 = -33.85 + -27.84)