Mercurial > repos > rnateam > locarna_pairwise_p
comparison test-data/haca.snoRNA-default.stdout @ 3:a1c9c960cdd5 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/locarna commit 94c141a71ef115279f1090f782b6f5cdeea9c277
| author | bgruening |
|---|---|
| date | Mon, 19 Aug 2024 18:52:22 +0000 |
| parents | 535f2e41d4f7 |
| children |
comparison
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| 2:535f2e41d4f7 | 3:a1c9c960cdd5 |
|---|---|
| 1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 1.9.0 | 1 mLocARNA --- multiple Local (and global) Alignment of RNA --- LocARNA 2.0.1 |
| 2 Copyright Sebastian Will | |
| 3 | |
| 4 Compute pair probs ... | |
| 5 Compute pairwise alignments ... | |
| 6 Perform progressive alignment ... | |
| 7 | 2 |
| 8 | 3 |
| 9 alifold .((((((((........((((.(((((((......))))))).))))......))..)))))).............(((((((...((......((((((((((((.....))))))))) | 4 ACA7 ACCUCCUGGGAUCGCAUCUGG-AGAGUGC---CUAGUAUUCUGCCAGCUUCGGAA-AGGGAGGGAAAGCAAGCCUGGCAGAGGCACCCAUUC-CAUUCCCAGCUUGCUCCGUAGCUGGCG |
| 10 ))).........)).))).))))......... (-62.29 = -34.50 + -27.79) | 5 ACA30 UGGCACUUUCACAG--UUCCU-UCCCCAG---GCAGUGGGGCCAGGAUUUGGUAGCUGGUGCUGAGAGAAAAC---CC-UUG--AUUGUAUU-CUUGCCCUGGG---AUUAUACCAGUGG |
| 6 ACA5 UGCAGCCGUGUCAAAUUCAGUACCUGUCCUAUGCAUGGUAGGCACUGGCCCAGAA--GGCUGCCACAGAAACAC--UGUGAC-----UCAUG-GGCCCUGUUCCUGUGUCCCAGGCUCAG | |
| 7 ACA59 GCCCAGGGUAUGUUCACGGGGCGAUGCUGCCCUCCCAGCUGG--CCCAUGGGUGA-CCCUGGGAACAUUAACUGCCUCACAACGUUUGUGCCUCAGUUACCCGUAGAUGUAGUGAGGGUA | |
| 8 #A1 ................................................................AAAAAA.................................................. | |
| 9 #A2 ................................................................123456.................................................. | |
| 10 | |
| 11 ACA7 AUUGGA-----AGACACU-CUGCG-----ACA | |
| 12 ACA30 CAACUG-----UCACUCA-AUGGG-----ACA | |
| 13 ACA5 GGAUAA-----AUUUGGU-UACAG-----ACA | |
| 14 ACA59 ACAAUACUUACUCUCGUUGGUGAUAAGGAACA | |
| 15 #A1 .............................BBB | |
| 16 #A2 .............................123 | |
| 17 | |
| 18 alifold .((((((..........((((..(((((........)))))..))))..........)))))).............((((((.............((((((((..........)))).)) | |
| 19 ))..............)).))))......... (-53.08 = -26.63 + -26.46) | |
| 20 Results written to target directory /tmp/tmpstsz4a83/job_working_directory/000/4/working/mlocarna_results. |