annotate test-data/mafft_custom_result.aln @ 10:bcfce5aac49c draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 16f9191fac72d4617fc59649c63de5c9ab8fbe70"

CLUSTAL format alignment by MAFFT F-INS-i (v7.455)


1==             MN------------------------GTE--GDNFYVPFS--------NKTGL-ARSPYE
2==             MN------------------------GTE--GPNFYVPFS--------NITGV-VRSPFE
3==             MN------------------------GTE--GINFYVPMS--------NKTGV-VRSPFE
4=p             MN------------------------GTE--GKNFYVPMS--------NRTGL-VRSPFE
5=p             MN------------------------GTE--GNNFYVPLS--------NRTGL-VRSPFE
6==             MK------------------------QVPEFHEDFYIPIP-------LDINNLSAYSPFL
7==             MR------------------------KMS--EEEFYL------------FKNISSVGPWD
8=opsin,        ------------------------------------------------------------
9==             MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE
10==            MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE
11==            MTEAWNVAVFAARRSRDD------DDTTR--GSVFTYTNT--------NN----TRGPFE
12==            MA-AWEAA-FAARRRHEE------EDTTR--DSVFTYTNS--------NN----TRGPFE
13==            MS----------------------SNSSQ--------------AP--PNG----TPGPFD
14==            MESG-NV-----------------------------------------SSSLFGNVSTAL
15==            MEYH-NV------------------------------------------SSVLGNVSSVL
16==            MEPLCNA------------------------------------------------SEPPL
17==            MDALCNA------------------------------------------------SEPPL
18==            MT-------------------------------------------------------NAT
19==            MA-------------------------------------------------------NVT
20==            ME-------------------------------------------------SFAVAAAQL
21==            ME-------------------------------------------------SFAVAAAQL
22==            MD-------------------------------------------------SFAAVATQL
23==            MERS--------------------------------------------HLPETPFDLAHS
24==            MERS--------------------------------------------LLPEPPLAMALL
25==            MI-------------------------------------------------------AVS
26==            M-----------------------------------------------------------
27==            MVESTT------------------------------------------------------
28==            MGRD--------------------------------------------------------
29==            MM-----DVNSSGRPDLYGH-----------LRSFLLPEVGRGLPDLSPDGGADPVAGSW
30==            M-----------------------------------------------------------
31=p            M-----------------------------------------------------------
32==            MD------VLSPGQ----------------------------------GNNTTSPPAPFE
33=p            MD------VFSFGQ----------------------------------GNNTTASQEPFG
34==            MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL
35=p            MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL
36==            ME-------GAEGQEELD-------------WEALYLRL---------PLQNCSWNSTGW
                                                                            

1==             YP----------------------------------------------------------
2==             QP----------------------------------------------------------
3==             YP----------------------------------------------------------
4=p             YP----------------------------------------------------------
5=p             YP----------------------------------------------------------
6==             VP----------------------------------------------------------
7==             GP----------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             GP----------------------------------------------------------
10==            GP----------------------------------------------------------
11==            GP----------------------------------------------------------
12==            GP----------------------------------------------------------
13==            GP----------------------------------------------------------
14==            RPEARL----------------------SAETRLLGWNVPPEELRHIPEHWL--------
15==            RPDARL----------------------SAESRLLGWNVPPDELRHIPEHWL--------
16==            RPEAR-SSG-------------------NGDLQFLGWNVPPDQIQYIPEHWL--------
17==            RPEARMSSG-------------------SDELQFLGWNVPPDQIQYIPEHWL--------
18==            GPQMAYYGAASMDFG-------------YPEGVSIVDFVRPEIKPYVHQHWY--------
19==            GPQMAFYGSGAATFG-------------YPEGMTVADFVPDRVKHMVLDHWY--------
20==            GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN--------
21==            GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN--------
22==            GPQFAAPS-----------------------NGSVVDKVTPDMAHLISPYWD--------
23==            GPRFQAQSSG---------------------NGSVLDNVLPDMAHLVNPYWS--------
24==            GPRFEAQTGG---------------------NRSVLDNVLPDMAPLVNPHWS--------
25==            GPSYEAFSYG--GQA-------------RFNNQTVVDKVPPDMLHLIDANWY--------
26==            -ANQLSYSSL--GWP-------------YQPNASVVDTMPKEMLYMIHEHWY--------
27==            ----------LVNQT-------------WWYNPTV----------DIHPHWA--------
28==            ---------LRDNET-------------WWYNPSI----------VVHPHWR--------
29==            APHLLS-----------------------------------EVTASPAPTWDAPPDNASG
30==            -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG
31=p            -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG
32==            TG--------------------------------------GNTTGI--------------
33=p            TG--------------------------------------GNVTSI--------------
34==            SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL-------
35=p            SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL-------
36==            EPNW-------------------------------------NVTVVPNTTWWQ-------
                                                                            

1==             -----QY-YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAM
2==             -----QY-YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAV
3==             -----QY-YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAV
4=p             -----QY-YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAV
5=p             -----QY-YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAV
6==             -----QD-HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSI
7==             -----QY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF
8=opsin,        ------------------------------------------------------------
9==             -----NY-HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAV
10==            -----NY-HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAV
11==            -----NY-HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAF
12==            -----NY-HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV
13==            -----QWPYQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAV
14==            -----TY-PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAF
15==            -----IY-PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAF
16==            -----TQ-LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAV
17==            -----TQ-LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAV
18==            -----NY-PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLAL
19==            -----NY-PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLAL
20==            -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI
21==            -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI
22==            -----QF-PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI
23==            -----RF-APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF
24==            -----RF-APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF
25==            -----QY-PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAI
26==            -----AF-PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAF
27==            -----KF-DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAM
28==            -----EF-DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAF
29==            CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLAL
30==            CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL
31=p            CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL
32==            SDVTVSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV
33=p            SDVTFSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV
34==            TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV
35=p            TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV
36==            --ASAPFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAV
                                                                            

1==             ANLFMVLFG-FTVTMYTSMNG-YFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYI
2==             ADLFMVFGG-FTTTLYTSLHG-YFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYV
3==             ADLFMACFG-FTVTFYTAWNG-YFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYI
4=p             AGTIMVCFG-FTVTFYTAING-YFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI
5=p             AGAIMVCFG-FTVTFYTAING-YFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI
6==             ANLFVAIFG-SPLSFYSFFNR-YFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWL
7==             GGFLLCIFS-VFPVFVASCNG-YFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYI
8=opsin,        -DLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL
9==             ADLAETVIA-STISVVNQVYG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWM
10==            ADLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL
11==            VDLVETLVA-STISVFNQIFG-YFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWF
12==            ADLGETVIA-STISVINQISG-YFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWF
13==            ADLLVTLCG-SSVSLSNNING-FFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYV
14==            CDFMMMVK--TPIFIYNSFHQ-GYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFN
15==            CDFMMMIK--TPIFIYNSFHQ-GYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYN
16==            FDLIMCLK--APIF--NSFHR-GFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN
17==            FDLIMCLK--APIFIYNSFHR-GFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN
18==            SDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYN
19==            SDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYN
20==            SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
21==            SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
22==            SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ
23==            SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYN
24==            SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYN
25==            SNFLMMFCM-SPPMVINCYYE-TWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYN
26==            SDFCMMAFM-MPTMTSNCFAE-TWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYN
27==            SDLSFSAINGFPLKTISAFMK-KWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYN
28==            SDFTFSLVNGFPLMTISCFLK-KWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYN
29==            ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL
30==            ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL
31=p            ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL
32==            TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW
33=p            TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW
34==            ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW
35=p            ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW
36==            ADLLVACLV-MPLGAVYEVVQ-RWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYW
                 .                     :   :    * :                  :  :*: 

1==             VICKPMGNFR-FGNTHAIMGVAFTWIMALACA-APPLV-GWSRYIPEGMQCSCGPDYYTL
2==             VVCKPMSNFR-FGENHAIMGVAFTWVMALACA-APPLV-GWSRYIPEGMQCSCGIDYYTL
3==             VVCKPMGNFR-FSATHAMMGIAFTWVMAFSCA-APPLF-GWSRYMPEGMQCSCGPDYYTH
4=p             VVCKPMGSFK-FSSSHAFAGIAFTWVMALACA-APPLF-GWSRYIPEGMQCSCGPDYYTL
5=p             VVCKPMGSFK-FSSTHASAGIAFTWVMAMACA-APPLV-GWSRYIPEGIQCSCGPDYYTL
6==             VICKPLGNFT-FKTPHAIAGCILPWISALAAS-LPPLF-GWSRYIPEGLQCSCGPDWYTT
7==             VICKPFGNFR-FSSKHALTVVLATWTIGIGVS-IPPFF-GWSRFIPEGLQCSCGPDWYTV
8=opsin,        VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG
9==             VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG
10==            VVCKPFGNVR-FDAKLAIVGIAFSWIWSAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG
11==            VVCKPFGNIK-FDSKLAIIGIVFSWVWAWGWS-APPIF-GWSRYWPHGLKTSCGPDVFSG
12==            VVCKPFGNIK-FDGKLAVAGILFSWLWSCAWT-APPIF-GWSRYWPHGLKTSCGPDVFSG
13==            VVCKPLGDFQ-FQRRHAVSGCAFTWGWALLWS-APPLL-GWSSYVPEGLRTSCGPNWYTG
14==            VITRPMEGK--MTHGKAIAMIIFIYMYATPWV-VACYTETWGRFVPEGYLTSCTFDYLTD
15==            VITRPMEGK--MTHGKAIAMIIFIYLYATPWV-VACYTESWGRFVPEGYLTSCTFDYLTD
16==            VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD
17==            VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD
18==            IICNGFNGPK-LTTGKAVVFALISWVIAIGCA-LPPFF-GWGNYILEGILDSCSYDYLTQ
19==            IICNGFNGPK-LTQGKATFMCGLAWVISVGWS-LPPFF-GWGSYTLEGILDSCSYDYFTR
20==            VIVKGMAGRP-MTIPLALGKM----------------------YVPEGNLTSCGIDYLER
21==            VIVKGMAGRP-MTIPLALGKIAYIWFMSSIWC-LAPAF-GWSRYVPEGNLTSCGIDYLER
22==            VIVKGMAGRP-MTIPLALGKIAYIWFMSTIWCCLAPVF-GWSRYVPEGNLTSCGIDYLER
23==            VIVKGINGTP-MTIKTSIMKILFIWMMAVFWT-VMPLI-GWSAYVPEGNLTACSIDYMTR
24==            VIVKGINGTP-MTIKTSIMKIAFIWMMAVFWT-IMPLI-GWSSYVPEGNLTACSIDYMTR
25==            VIVKGLSGKP-LSINGALIRIIAIWLFSLGWT-IAPMF-GWNRYVPEGNMTACGTDYFNR
26==            VIVRGMAAAP-LTHKKATLLLLFVWIWSGGWT-ILPFF-GWSRYVPEGNLTSCTVDYLTK
27==            VIGRPMAASKKMSHRRAFLMIIFVWMWSIVWS-VGPVF-NWGAYVPEGILTSCSFDYLST
28==            VIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA-IGPIF-GWGAYTLEGVLCNCSFDYISR
29==            GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ
30==            GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ
31=p            GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ
32==            AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK
33=p            AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK
34==            AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ
35=p            AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ
36==            AVTN-IDYIHASTAKRVGMMIACVWTVSFFVC-IAQLL-GWKDPDWNQRVSEDLRCVVSQ
                 :   :                                                      

1==             NPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQE---------------
2==             KPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQE---------------
3==             NPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQE---------------
4=p             NPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQD---------------
5=p             NPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQD---------------
6==             NNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQAD---------------
7==             GTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQE---------------
8=opsin,        SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE---------------
9==             SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE---------------
10==            SSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKE---------------
11==            SVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKE---------------
12==            SSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKE---------------
13==            GS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKE---------------
14==            NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNV-
15==            NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLRSNV-
16==            NF--DTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNV-
17==            NF--DTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLRSNV-
18==            DF--NTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLRSN--
19==            DM--NTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLRSN--
20==            DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS--
21==            DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS--
22==            DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS--
23==            MW--NPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSS--
24==            QW--NPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLRSS--
25==            GL--LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSS--
26==            DW--SSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLRANA-
27==            DP--STRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA--
28==            DS--TTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA--
29==            D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP--------------
30==            D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP--------------
31=p            D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP--------------
32==            D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP
33=p            D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS
34==            D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV
35=p            D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV
36==            D-----VGYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGA-------TARGGVG
                                    *   :   *  :                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            ------------------------------------------------------------
28==            ------------------------------------------------------------
29==            GFPRVE--------------------------------PDSVI----------ALNGIVK
30==            GFPRVQ--------------------------------PESVI----------SLNGVVK
31=p            GFPRVQ--------------------------------PESVI----------SLNGVVK
32==            A-PQPKKS-VNGESGSRNWRLGVESKAGGAL-----C-----------------ANGAVR
33=p            A-PPPKKS-LNGQPGSGDWRRCAENRAVGTP-----C-----------------TNGAVR
34==            ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV--
35=p            ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV--
36==            PPPVPAGGALVAGGGSGGIAAAVVAVIGR---------PLPTISET-------TTTGFTN
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            ------------------------------------------------------------
28==            ------------------------------------------------------------
29==            -------------LQKEVEEC-AN------------------LSRLLKHER---------
30==            -------------LQKEVEEC-AN------------------LSRLLKHER---------
31=p            -------------LQKEVEEC-AN------------------LSRLLKHER---------
32==            QGDDGAALEV-----IEVHRV-GNSKEHLPLPSEAGP--TPCAPASFERKNERN------
33=p            QGDDEATLEV-----IEVHRV-GNSKEHLPLPSESGS--NSYAPACLERKNERN------
34==            -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN
35=p            -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN
36==            VSSNNTSP--------EKQSC-ANGLEADPPTTGYGAVAAAYYPSLVRRKP---------
                                                                            

1==             --------SASTQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT--HQGSDFGAT-FM
2==             --------SATTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT--HQGSNFGPI-FM
3==             --------SATTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT--NKGADFTAT-LM
4=p             --------SASTQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF--NKGADFSAK-FM
5=p             --------SASTQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF--NKGAAFSAQ-FM
6==             --------SASTQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS--HRGEEFDLR-MA
7==             --------SATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN--NRNHGLDLR-LV
8=opsin,        --------SESTQKAEKEVTRMVVVMVLAFC-----------------------------
9==             --------SESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA--NPGYPFHPL-MA
10==            --------SESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA--NPGYAFHPL-MA
11==            --------SESTQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA--NPGYAFHPL-AA
12==            --------SESTQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA--NPGYAFHPL-AA
13==            --------ADTTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT--HKGIIIQPV-LA
14==            --------DKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF--GDKTLLTPG-AT
15==            --------DKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF--GDKTLLTPG-AT
16==            --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTQG-AT
17==            --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTPG-AT
18==            --------EADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM--GDTSGITPL-VS
19==            --------EAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL--GNAEGITPL-LT
20==            --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT
21==            --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT
22==            --------EDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT
23==            --------EDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF--KI-DGLTPL-TT
24==            --------EDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF--KI-DGLTPL-TT
25==            --------ENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF--NL-VKISPL-FT
26==            --------DQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF--SSGTRLTPL-AT
27==            --------Q-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF--GPAEWVTPY-AA
28==            --------Q-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF--GPLEWVTPY-AA
29==            -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE
30==            -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE
31=p            -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE
32==            ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPTL-LG
33=p            ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPAL-LG
34==            DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR
35=p            DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR
36==            -------KEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-CD--CEVSPV-LT
                               * .           :                              

1==             TLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----CC-----GKNPLGDDE-SGA-S
2==             TLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----CC-----GKNPLGDDE-ASA-T
3==             AVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----CC-----GKNPFGDEDVSSTVS
4=p             AIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----FC-----GKNPLGDDE-SSTVS
5=p             AIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----FC-----GKNPLGDEE-SSTVS
6==             TIPSCLSKASTVYNPVIYVLMNKQFRSCMMK-M-----VC-----GKN-IEEDE-AST-S
7==             TIPSFFSKSACIYNPIIYCFMNKQFQACIMK-M-----VC-----GKA-MTDES-DTC-S
8=opsin,        ------------------------------------------------------------
9==             ALPAFFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S
10==            ALPAYFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S
11==            ALPAYFAKSATIYNPVIYVFMNRQFRNCIMQ-L-----F------GKK-VDDGS-EAS-T
12==            ALPAYFAKSATIYNPIIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-EVS-T
13==            SLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----CC-----GYQPQRTGKASPGTP
14==            MIPACACKMVACIDPFVYAISHPRYRMELQKRCPW---LALN---EK----APE-SSA-V
15==            MIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW---LAIS---EK----APE-SRA-A
16==            MIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW---LGVN---EK----SGE-ISS-A
17==            MIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW---LGVN---EK----SGE-ASS-A
18==            TLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW---FCVH---ET----ETK-SND-D
19==            TLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW---FCVH---EK----DPN-DVE-E
20==            IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A
21==            IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A
22==            IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSE-A
23==            IWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP----MCVF---GNT--DEPK-PDA-P
24==            IWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP----MCVC---GTT--DEPK-PDA-P
25==            IWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP----SLAC---AA----EPS-SDA-V
26==            IWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP----SLAC---GS---GESG-SDV-K
27==            ELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF---DEK--ECED-AND-A
28==            QLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF---DDK--ETED-DKD-A
29==            RTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM
30==            RTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----QCQYRNINRKL------SAAGM
31=p            RTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM
32==            AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRQ------------
33=p            AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRR------------
34==            SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------
35=p            SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------
36==            SLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL------CGRRVRRRR------------
                                                                            

1==             TSKTEVSSVSTS------------------------------------------------
2==             ASKTETSQVA--------------------------------------------------
3==             QSKTEVSSVSSS------------------------------------------------
4=p             TSKTEVSSVS--------------------------------------------------
5=p             TSKTEVSSVS--------------------------------------------------
6==             SQVTQVSSVA--------------------------------------------------
7==             SQKTEVSTVSST------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ASKTEVSSVS--------------------------------------------------
10==            ASKTEVSSVS--------------------------------------------------
11==            TSRTEVSSVSNS------------------------------------------------
12==            -SRTEVSSVSNS------------------------------------------------
13==            GPHADVTAAGLR------------------------------------------------
14==            ASTS-TTQEPQ-------------------------------------------------
15==            ISTS-TTQEQQ-------------------------------------------------
16==            QSTT-TQEQ-Q-------------------------------------------------
17==            QSTT-TQEQTQ-------------------------------------------------
18==            SQSNSTVAQDK-------------------------------------------------
19==            NQSSNTQTQEK-------------------------------------------------
20==            QSQA-TASEAE-------------------------------------------------
21==            QSQA-TASEAE-------------------------------------------------
22==            QSQA-TTSEAE-------------------------------------------------
23==            ASDTETTSEAD-------------------------------------------------
24==            PSDTETTSEAE-------------------------------------------------
25==            STTSGTTTVTDN------------------------------------------------
26==            SEASATTTMEEK------------------------------------------------
27==            EEEV-VASERG--GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGA
28==            ETEI-PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG-
29==            HEALKLAERPERP-----------------EFVLQNA-----------------------
30==            HEALKLAERPERS-----------------EFVLQNS-----------------------
31=p            HEALKLAERPERS-----------------EFVLQNS-----------------------
32==            ------------------------------------------------------------
33=p            ------------------------------------------------------------
34==            ------------------------------------------------------------
35=p            ------------------------------------------------------------
36==            ------------------------------------------------------------
                                                                            

1==             --------------------------------------------PVSP-A---
2==             -----------------------------------------------P-A---
3==             --------------------------------------------QVSP-A---
4=p             -----------------------------------------------P-A---
5=p             -----------------------------------------------P-A---
6==             -----------------------------------------------PEK---
7==             --------------------------------------------QVGP-N---
8=opsin,        -----------------------------------------------------
9==             --------------------------------------------SVSP-A---
10==            --------------------------------------------SVSP-A---
11==            --------------------------------------------SVAP-A---
12==            --------------------------------------------SVSP-A---
13==            -------------------------------------------NKVMP-AHPV
14==            --------------------------------------------QTTA-A---
15==            --------------------------------------------QTTA-A---
16==            --------------------------------------------QTTA-A---
17==            --------------------------------------------QTSA-A---
18==            -------------------------------------------------A---
19==            -------------------------------------------------S---
20==            ----------------------------------------------SK-A---
21==            ----------------------------------------------SK-A---
22==            ----------------------------------------------SK-A---
23==            ----------------------------------------------SK-A---
24==            ----------------------------------------------SK-D---
25==            -------------------------------------------EK-SN-A---
26==            -------------------------------------------PKIPE-A---
27==            YPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A---
28==            YPP-QGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A---
29==            -------------------------------------------DYCRKKGHDS
30==            -------------------------------------------DHCGKKGHDT
31=p            -------------------------------------------DHCGKKGHDT
32==            -----------------------------------------------------
33=p            -----------------------------------------------------
34==            -----------------------------------------------------
35=p            -----------------------------------------------------
36==            -------------------------------------------------A-PQ