annotate test-data/mafft_custom_original.clustal.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af

CLUSTAL format alignment by MAFFT G-INS-i (v7.520)


1==             MN----------------------------------------------------------
2==             MN----------------------------------------------------------
3==             MN----------------------------------------------------------
4=p             MN----------------------------------------------------------
5=p             MN----------------------------------------------------------
6==             MK----------------------------------------------------------
7==             MR----------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             MA------QQWS-LQRLAGRHPQDS--------------------------YED------
10==            MA------QQWS-LQRLAGRHPQDS--------------------------YED------
11==            MT------EAWNVAVFAARRSRDD----------------------------DD------
12==            MA-------AWE-AAFAARRRHEE----------------------------ED------
13==            MS----------------------------------------------------------
14==            MESGNVS-----------------------------------------------------
15==            MEYHNVS-----------------------------------------------------
16==            ME----------------------------------------------------------
17==            MD----------------------------------------------------------
18==            MT----------------------------------------------------------
19==            MA----------------------------------------------------------
20==            MESF--------------------------------------------------------
21==            MESF--------------------------------------------------------
22==            MDSF--------------------------------------------------------
23==            MERSHLP---------------------------------------------------ET
24==            MERSLLP---------------------------------------------------EP
25==            MI----------------------------------------------------------
26==            M-----------------------------------------------------------
27==            MV----------------------------------------------------------
28==            MG----------------------------------------------------------
29==            MMDVN-----------SSGRPDLYGHLRSFLLPEVGRGLPDLSPDG------------GA
30==            M-----------------------------------------------------------
31=p            M-----------------------------------------------------------
32==            MDVLS-------------------------------------------------------
33=p            MDVFS-------------------------------------------------------
34==            MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
35=p            MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
36==            ME----------------------------------------------------------
                                                                            

1==             ----GTEG--DNFY------------VPFSNKTG----------------------LARS
2==             ----GTEG--PNFY------------VPFSNITG----------------------VVRS
3==             ----GTEG--INFY------------VPMSNKTG----------------------VVRS
4=p             ----GTEG--KNFY------------VPMSNRTG----------------------LVRS
5=p             ----GTEG--NNFY------------VPLSNRTG----------------------LVRS
6==             ----QVPEFHEDFY------IPIP--LDINNLSA------------------------YS
7==             ----KMSE--EEFY------------L-FKNISS----------------------V--G
8=opsin,        ------------------------------------------------------------
9==             ----STQS--SIFT------------YTNSNSTR-------------------------G
10==            ----STQS--SIFT------------YTNSNSTR-------------------------G
11==            ----TTRG--SVFT------------YTNTNNTR-------------------------G
12==            ----TTRD--SVFT------------YTNSNNTR-------------------------G
13==            ----SNSS------------------QAPPNGTP-------------------------G
14==            SSLFGNVS--TALR-------------PEARLSA---E------TRLLGWNVPPEELRHI
15==            SVL-GNVS--SVLR-------------PDARLSA---E------SRLLGWNVPPDELRHI
16==            -PLCNASE--PPLR-------------PEAR-SSGNGD------LQFLGWNVPPDQIQYI
17==            -ALCNASE--PPLR-------------PEARMSSGSDE------LQFLGWNVPPDQIQYI
18==            ----NATG--PQMAY-----------YGAASMDFGYPE------GVSIVDFVRPEIKPYV
19==            ----NVTG--PQMAF-----------YGSGAATFGYPE------GMTVADFVPDRVKHMV
20==            AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
21==            AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
22==            AAVATQLG--PQFA----------------APS-----------NGSVVDKVTPDMAHLI
23==            PFDLAHSG--PRFQ----------------AQSSG---------NGSVLDNVLPDMAHLV
24==            PLAMALLG--PRFE----------------AQTGG---------NRSVLDNVLPDMAPLV
25==            ----AVSG--PSYE----------------AFSYGGQARFN---NQTVVDKVPPDMLHLI
26==            -----ANQ--LSYS----------------SLGWPYQP------NASVVDTMPKEMLYMI
27==            ----ESTT--------------------LVNQTWWY--------NPTVD----------I
28==            ----RDLR---------------------DNETWWY--------NPSIV----------V
29==            DPVAGSWA--PHLL------------S---EVTASPAPTWDAPPDNASG-----------
30==            ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
31=p            ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
32==            --------------------------PGQGNNTTSPPAPFETGGNTTGI-----------
33=p            --------------------------FGQGNNTTASQEPFGTGGNVTSI-----------
34==            QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
35=p            QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
36==            ----GAEG--QEELDWEALYLRLPLQNCSWNSTGWEPN-----WNVTVV----------P
                                                                            

1==             PYEYPQY------YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYIL
2==             PFEQPQY------YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYIL
3==             PFEYPQY------YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYIL
4=p             PFEYPQY------YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFIL
5=p             PFEYPQY------YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFIL
6==             PFLVPQD------HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYIL
7==             PWDGPQY------HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL
8=opsin,        ------------------------------------------------------------
9==             PFEGPNY------HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWIL
10==            PFEGPNY------HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWIL
11==            PFEGPNY------HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWIL
12==            PFEGPNY------HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWIL
13==            PFDGPQWP-----YQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYIL
14==            PEHWLTY------PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV
15==            PEHWLIY------PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILV
16==            PEHWLTQ------LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFV
17==            PEHWLTQ------LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFV
18==            HQHWYNY------PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILV
19==            LDHWYNY------PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLI
20==            SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
21==            SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
22==            SPYWDQF------PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLV
23==            NPYWSRF------APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLV
24==            NPHWSRF------APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLV
25==            DANWYQY------PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFV
26==            HEHWYAF------PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLV
27==            HPHWAKF------DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFI
28==            HPHWREF------DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFI
29==            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLI
30==            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
31=p            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
32==            -------------SDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
33=p            -------------SDVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
34==            DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
35=p            DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
36==            NTTWWQASAPFD-TPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLI
                                                                            

1==             LNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLA
2==             LNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLA
3==             VNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLA
4=p             VNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLA
5=p             VNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLA
6==             VNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVA
7==             VNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLA
8=opsin,        ------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
9==             VNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
10==            VNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
11==            VNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIIS
12==            VNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIIS
13==            VNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILA
14==            INLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIA
15==            INLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIA
16==            LNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIG
17==            LNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIG
18==            VNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMIS
19==            VNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMIS
20==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
21==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
22==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
23==            LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIA
24==            LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIA
25==            INLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIA
26==            VNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMIT
27==            INLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMIS
28==            INLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMIS
29==            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
30==            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
31=p            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
32==            GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
33=p            GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
34==            LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
35=p            LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
36==            LSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIA
                      .                     :   :    * :                  : 

1==             IERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQ
2==             IERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQ
3==             IERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQ
4=p             IERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQ
5=p             IERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQ
6==             FERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQ
7==             FERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQ
8=opsin,        WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
9==             WERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
10==            WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLK
11==            WERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLK
12==            WERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLK
13==            LERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLR
14==            YDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYL
15==            YDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYL
16==            YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
17==            YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
18==            FDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGIL
19==            FDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGIL
20==            LDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNL
21==            LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNL
22==            LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNL
23==            FDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNL
24==            FDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNL
25==            FDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNM
26==            LDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNL
27==            IDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGIL
28==            IDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVL
29==            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
30==            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
31=p            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
32==            LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
33=p            LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
34==            MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
35=p            MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
36==            LDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLR
                 :*:  :   :                                             .   

1==             CSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA---
2==             CSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA---
3==             CSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA---
4=p             CSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA---
5=p             CSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA---
6==             CSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA---
7==             CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA---
8=opsin,        TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
9==             TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
10==            TSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE---
11==            TSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE---
12==            TSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE---
13==            TSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD---
14==            TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
15==            TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
16==            TSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKM
17==            TSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKM
18==            DSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKM
19==            DSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKM
20==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
21==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
22==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
23==            TACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKM
24==            TACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKM
25==            TACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM
26==            TSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKM
27==            TSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRL
28==            CNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL
29==            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
30==            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
31=p            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
32==            CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKT
33=p            CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKK
34==            CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
35=p            CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
36==            CVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARG
                     :                        *   :   *  :                  

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            NVE------------------SLRS-----------------------------------
15==            NVD------------------SLRS-----------------------------------
16==            NVE------------------SLRS-----------------------------------
17==            NVE------------------SLRS-----------------------------------
18==            NVS------------------TLRS-----------------------------------
19==            NVT------------------NLRS-----------------------------------
20==            NVK------------------SLRS-----------------------------------
21==            NVK------------------SLRS-----------------------------------
22==            NVK------------------SLRS-----------------------------------
23==            NVK------------------SLRS-----------------------------------
24==            NVK------------------SLRS-----------------------------------
25==            NVA------------------SLRS-----------------------------------
26==            NVA------------------SLRA-----------------------------------
27==            NAK------------------ELRK-----------------------------------
28==            NAK------------------ELRK-----------------------------------
29==            -----------FPRVEPDSVIALNG-----------------------------------
30==            -----------FPRVQPESVISLNG-----------------------------------
31=p            -----------FPRVQPESVISLNG-----------------------------------
32==            GADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC-------------
33=p            GAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC-------------
34==            RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
35=p            RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
36==            GVG---------------------------------------------PPP---------
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            ------------------------------------------------------------
28==            ------------------------------------------------------------
29==            ---------------------------IVKLQKE-------------------VEECAN-
30==            ---------------------------VVKLQKE-------------------VEECAN-
31=p            ---------------------------VVKLQKE-------------------VEECAN-
32==            -----------------------------------ANGAVRQGDDGAALEVIEVHRVGNS
33=p            -----------------------------------TNGAVRQGDDEATLEVIEVHRVGNS
34==            LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
35=p            LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
36==            VPAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANG
                                                                            

1==             -----------------------------------STQKAEKEVTRMVVLMVIGFLVCWV
2==             -----------------------------------TTQKAEKEVTRMVIIMVIFFLICWL
3==             -----------------------------------TTQKAEKEVTRMVILMVLGFMLAWT
4=p             -----------------------------------STQKAEREVTKMVILMVFGFLIAWT
5=p             -----------------------------------STQKAEREVTKMVILMVLGFLVAWT
6==             -----------------------------------STQKAEREVTKMVVVMVLGFLVCWA
7==             -----------------------------------TTQKAEREVSRMVVVMVGSFCVCYV
8=opsin,        -----------------------------------STQKAEKEVTRMVVVMVLAFC----
9==             -----------------------------------STQKAEKEVTRMVVVMVLAFCFCWG
10==            -----------------------------------STQKAEKEVTRMVVVMIFAYCVCWG
11==            -----------------------------------STQKAEREVSRMVVVMIVAFCICWG
12==            -----------------------------------STQKAEKEVSRMVVVMIVAYCFCWG
13==            -----------------------------------TTQRAEREVTRMVIVMVMAFLLCWL
14==            -------------------------------NVDKNKETAEIRIAKAAITICFLFFCSWT
15==            -------------------------------NVDKSKEAAEIRIAKAAITICFLFFASWT
16==            -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
17==            -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
18==            --------------------------------NEADAQRAEIRIAKTALVNVSLWFICWT
19==            --------------------------------NEAETQRAEIRIAKTALVNVSLWFICWT
20==            --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
21==            --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
22==            --------------------------------SEDADKSAEGKLAKVALVTISLWFMAWT
23==            --------------------------------SEDCDKSAEGKLAKVALTTISLWFMAWT
24==            --------------------------------SEDCDKSAENKLAKVALTTISLWFMAWT
25==            --------------------------------SENQNTSAECKLAKVALMTISLWFMAWT
26==            -------------------------------NADQQKQSAECRLAKVAMMTVGLWFMAWT
27==            ---------------------------------AQAGASAEMKLAKISMVIITQFMLSWS
28==            ---------------------------------AQAGANAEMRLAKISIVIVSQFLLSWS
29==            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
30==            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
31=p            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
32==            KEHLPLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
33=p            KEHLPLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
34==            KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
35=p            KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
36==            LEADPPTTGYGAVAAAYYPSLVRR------KPKEAADSKRERKAAKTLAIITGAFVACWL
                                                        * .           :     

1==             PYASVAFYIFT---HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLC
2==             PYASVAMYIFT---HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLC
3==             PYAVVAFWIFT---NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC
4=p             PYATVAAWIFF---NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF
5=p             PYATVAAWIFF---NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF
6==             PYASFSLWIVS---HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMVC
7==             PYAAFAMYMVN---NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC
8=opsin,        ------------------------------------------------------------
9==             PYAFFACFAAA---NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-
10==            PYTFFACFAAA---NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-
11==            PYASFVSFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-
12==            PYTFFACFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-
13==            PYSTFALVVAT---HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLC
14==            PYGVMSLIGAF---GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCP
15==            PYGVMSLIGAF---GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCP
16==            PYGVMSLIGAF---GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
17==            PYGVMSLIGAF---GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCP
18==            PYALISLKGVM---GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLP
19==            PYAAITIQGLL---GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLP
20==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
21==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
22==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
23==            PYLVICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP
24==            PYLIICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP
25==            PYLVINFSGIF---NL-VK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP
26==            PYLIISWAGVF---SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP
27==            PYAIIALLAQF---GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFP
28==            PYAVVALLAQF---GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP
29==            PFFLLSTARPFICGTSCSC-IPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
30==            PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQ
31=p            PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
32==            PFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
33=p            PFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
34==            PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
35=p            PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
36==            PFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLC
                                                                            

1==             C-GKNPLGDDE-SGA-STSKTEVSSVS-TSPV----------------------------
2==             C-GKNPLGDDE-ASA-TASKTE------TSQV----------------------------
3==             C-GKNPFGDEDVSSTVSQSKTEVSSVS-SSQV----------------------------
4=p             C-GKNPLGDDE-SSTVSTSKTEVSS------V----------------------------
5=p             C-GKNPLGDEE-SSTVSTSKTEVSS------V----------------------------
6==             --GKN-IEEDE-AST-SSQVTQVSSVA-PEK-----------------------------
7==             --GKA-MTDES-DTC-SSQKTEVSTVS-STQV----------------------------
8=opsin,        ------------------------------------------------------------
9==             --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
10==            --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
11==            --GKK-VDDGS-EAS-TTSRTEVSSVS-NSSV----------------------------
12==            --GKK-VDDGS-EVS--TSRTEVSSVS-NSSV----------------------------
13==            C-GYQPQRTGKASPGTPGPHADVTAAGLRNKV----------------------------
14==            WLALNEKAPES-SAV-ASTST---TQE-PQQT----------------------------
15==            WLAISEKAPES-RAA-ISTST---TQE-QQQT----------------------------
16==            WLGVNEKSGEI-SSA-QSTTT---QEQ--QQT----------------------------
17==            WLGVNEKSGEA-SSA-QSTTT---QEQ-TQQT----------------------------
18==            WFCVHETETKS-NDD-SQSNS---TVA-Q-------------------------------
19==            WFCVHEKDPND-VEE-NQSSN---TQT-Q-------------------------------
20==            CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
21==            CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
22==            CCVFGKVDDGK-SSE-AQSQA-TTSEA-E-------------------------------
23==            MCVFGNTDEPK-PDA-PASDTETTSEA-D-------------------------------
24==            MCVCGTTDEPK-PDA-PPSDTETTSEA-E-------------------------------
25==            SLACA-AEPSS-DAV-STTSG-TTTVT-DNEK----------------------------
26==            SLACGSGESGS-DVK-SEASA-TTTME-EKPK----------------------------
27==            WLLTCCQFDEK-ECE-DANDAEEEVVA-SER---GGESRDAAQMKEMMAMMQKMQAQQAA
28==            WVLTCCQFDDK-ETE-DDKDAETEIPA-GESSD-AAPSADAAQMKEMMAMMQKMQQQQAA
29==            --CQYRNINRKLSAA-GMHEALKLAER-PERPEFVLQNADYCRKKG--------------
30==            --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
31=p            --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
32==            --CKFCR-----------------------------------------------------
33=p            --CKFCR-----------------------------------------------------
34==            --GKYRR-----------------------------------------------------
35=p            --GKYRR-----------------------------------------------------
36==            --GRRVR-RRR-------------------------------------------------
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ---------------------------------------MP-------------------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            YQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGA
28==            YPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AA
29==            ------------------------------------------------------------
30==            ------------------------------------------------------------
31=p            ------------------------------------------------------------
32==            ------------------------------------------------------------
33=p            ------------------------------------------------------------
34==            ------------------------------------------------------------
35=p            ------------------------------------------------------------
36==            ------------------------------------------------------------
                                                                            

1==             ---------SPA
2==             ---------APA
3==             ---------SPA
4=p             ---------SPA
5=p             ---------SPA
6==             ------------
7==             ---------GPN
8=opsin,        ------------
9==             ---------SPA
10==            ---------SPA
11==            ---------APA
12==            ---------SPA
13==            --------AHPV
14==            ---------TAA
15==            ---------TAA
16==            ---------TAA
17==            ---------SAA
18==            ---------DKA
19==            ---------EKS
20==            ---------SKA
21==            ---------SKA
22==            ---------SKA
23==            ---------SKA
24==            ---------SKD
25==            ---------SNA
26==            --------IPEA
27==            PPQGVDNQAYQA
28==            PPQGVDNQAYQA
29==            ---------HDS
30==            ---------HDT
31=p            ---------HDT
32==            -----------Q
33=p            -----------R
34==            ---------GHR
35=p            ---------GHR
36==            ---------APQ