Mercurial > repos > rnateam > mafft
comparison mafft.xml @ 8:4de39704d423 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 7f48fa9f0c2ef08ffe621a8215ea307ab780b9b5"
| author | bgruening |
|---|---|
| date | Sat, 13 Mar 2021 22:18:32 +0000 |
| parents | aaefa93c2dd2 |
| children | 6f28e90db932 |
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| 7:aaefa93c2dd2 | 8:4de39704d423 |
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| 225 </test> | 225 </test> |
| 226 <test expect_num_outputs="1" > | 226 <test expect_num_outputs="1" > |
| 227 <param name="inputSequences" value="sample.fa"/> | 227 <param name="inputSequences" value="sample.fa"/> |
| 228 <param name="flavourType" value="mafft-nwns"/> | 228 <param name="flavourType" value="mafft-nwns"/> |
| 229 <param name="outputFormat" value="--clustalout"/> | 229 <param name="outputFormat" value="--clustalout"/> |
| 230 <output name="outputAlignment" ftype="clustal" file="mafft_nwns_result.aln"/> | 230 <output name="outputAlignment" ftype="clustal" file="mafft_nwns_result.aln" lines_diff="2" /> |
| 231 </test> | 231 </test> |
| 232 <test expect_num_outputs="1" > | 232 <test expect_num_outputs="1" > |
| 233 <param name="inputSequences" value="sample.fa"/> | 233 <param name="inputSequences" value="sample.fa"/> |
| 234 <param name="flavourType" value="custom"/> | 234 <param name="flavourType" value="custom"/> |
| 235 <param name="matrix_condition" value="BLOSUM"/> | 235 <param name="matrix_condition" value="BLOSUM"/> |
| 236 <param name="BLOSUM" value="62"/> | 236 <param name="BLOSUM" value="62"/> |
| 237 <param name="distance_method" value="--fastapair"/> | 237 <param name="distance_method" value="--fastapair"/> |
| 238 <param name="weighti" value="2.7"/> | 238 <param name="weighti" value="2.7"/> |
| 239 <param name="iterations" value="1000"/> | 239 <param name="iterations" value="1000"/> |
| 240 <param name="outputFormat" value="--clustalout"/> | 240 <param name="outputFormat" value="--clustalout"/> |
| 241 <output name="outputAlignment" ftype="clustal" file="mafft_custom_result.aln"/> | 241 <output name="outputAlignment" ftype="clustal" file="mafft_custom_result.aln" lines_diff="2" /> |
| 242 </test> | 242 </test> |
| 243 </tests> | 243 </tests> |
| 244 <help> <![CDATA[ | 244 <help> <![CDATA[ |
| 245 **What it does** | 245 **What it does** |
| 246 MAFFT is a multiple sequence alignment program for unix-like operating systems. | 246 MAFFT is a multiple sequence alignment program for unix-like operating systems. |