Mercurial > repos > rnateam > mafft
comparison test-data/mafft_fftns_result.aln @ 0:a4e086689fae draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13
author | rnateam |
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date | Thu, 18 Jun 2015 08:59:56 -0400 |
parents | |
children | 15974dd17515 |
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-1:000000000000 | 0:a4e086689fae |
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] | |
2 -------------------MNGTE------------------------GDNF-------- | |
3 YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK----- | |
4 ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F | |
5 TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR | |
6 FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN | |
7 ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------ | |
8 ---------------------------------------------------AAAAQQ--- | |
9 ------------------------------------------------------------ | |
10 --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT- | |
11 HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN | |
12 PLGD-DE--SGASTSKTEVSSVS-TSPV-------------------------------- | |
13 --------------------------------------------SPA------------- | |
14 ------ | |
15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] | |
16 -------------------MNGTE------------------------GPNF-------- | |
17 YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ----- | |
18 ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F | |
19 TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR | |
20 FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN | |
21 ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------ | |
22 ---------------------------------------------------AAAQQQ--- | |
23 ------------------------------------------------------------ | |
24 --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT- | |
25 HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN | |
26 PLGD-DE--ASATASKTE------TSQV-------------------------------- | |
27 --------------------------------------------APA------------- | |
28 ------ | |
29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 | |
30 -------------------MNGTE------------------------GINF-------- | |
31 YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK----- | |
32 ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F | |
33 TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR | |
34 FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN | |
35 ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------ | |
36 ---------------------------------------------------AAAQQQ--- | |
37 ------------------------------------------------------------ | |
38 --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT- | |
39 NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN | |
40 PFGD-EDVSSTVSQSKTEVSSVS-SSQV-------------------------------- | |
41 --------------------------------------------SPA------------- | |
42 ------ | |
43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish | |
44 -------------------MNGTE------------------------GKNF-------- | |
45 YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- | |
46 ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F | |
47 TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK | |
48 FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN | |
49 ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------ | |
50 ---------------------------------------------------AAAQQQ--- | |
51 ------------------------------------------------------------ | |
52 --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF- | |
53 NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN | |
54 PLGD-DE-SSTVSTSKTEVSS------V-------------------------------- | |
55 --------------------------------------------SPA------------- | |
56 ------ | |
57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish | |
58 -------------------MNGTE------------------------GNNF-------- | |
59 YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ----- | |
60 ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F | |
61 TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK | |
62 FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN | |
63 ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------ | |
64 ---------------------------------------------------AAAQQQ--- | |
65 ------------------------------------------------------------ | |
66 --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF- | |
67 NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN | |
68 PLGD-EE-SSTVSTSKTEVSS------V-------------------------------- | |
69 --------------------------------------------SPA------------- | |
70 ------ | |
71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- | |
72 -------------------MKQVPEF----------------------HEDF-------- | |
73 YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI----- | |
74 ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S | |
75 PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT | |
76 FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN | |
77 ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------ | |
78 ---------------------------------------------------AAKAQA--- | |
79 ------------------------------------------------------------ | |
80 --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS- | |
81 HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN | |
82 -IEE-DE--ASTSSQVTQVSS------V-------------------------------- | |
83 --------------------------------------------APEK------------ | |
84 ------ | |
85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] | |
86 -------------------MRKMS------------------------EEEF-------- | |
87 YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA----- | |
88 ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V | |
89 FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR | |
90 FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS | |
91 ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------ | |
92 ---------------------------------------------------VAAQQQ--- | |
93 ------------------------------------------------------------ | |
94 --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN- | |
95 NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA | |
96 -MTD-ES--DTCSSQKTEVSTVS-STQV-------------------------------- | |
97 --------------------------------------------GPN------------- | |
98 ------ | |
99 > 8=opsin, greensensitive human (fragment) S07060 | |
100 ------------------------------------------------------------ | |
101 ------------------------------------------------------------ | |
102 --------------------------------------------------DLAETVIA-S | |
103 TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR | |
104 FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV | |
105 QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ | |
106 ---------------------------------------------------VAKQQK--- | |
107 ------------------------------------------------------------ | |
108 --------------ESESTQK------AEKEVTRMVVVMVLAFC---------------- | |
109 ------------------------------------------------------------ | |
110 ------------------------------------------------------------ | |
111 ------------------------------------------------------------ | |
112 ------ | |
113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] | |
114 -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- | |
115 QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- | |
116 ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S | |
117 TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR | |
118 FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV | |
119 QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------ | |
120 ---------------------------------------------------VAKQQK--- | |
121 ------------------------------------------------------------ | |
122 --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA- | |
123 NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK | |
124 -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- | |
125 --------------------------------------------SPA------------- | |
126 ------ | |
127 > 10== Z68193 1 human Red Opsin <>[] | |
128 -------------------MAQQWSL----------QRLAGRHPQDSYEDST-------- | |
129 QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV----- | |
130 ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S | |
131 TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR | |
132 FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV | |
133 QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------ | |
134 ---------------------------------------------------VAKQQK--- | |
135 ------------------------------------------------------------ | |
136 --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA- | |
137 NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK | |
138 -VDD-GS--ELSSASKTEVSSV---SSV-------------------------------- | |
139 --------------------------------------------SPA------------- | |
140 ------ | |
141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] | |
142 -------------------MTEAWNV----------AVFAARRSRDD-DDTT-------- | |
143 RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV----- | |
144 ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S | |
145 TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK | |
146 FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC | |
147 QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------ | |
148 ---------------------------------------------------VAAQQK--- | |
149 ------------------------------------------------------------ | |
150 --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA- | |
151 NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK | |
152 -VDD-GS--EASTTSRTEVSSVS-NSSV-------------------------------- | |
153 --------------------------------------------APA------------- | |
154 ------ | |
155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] | |
156 -------------------MA-AWEA----------AFAARRRHEE--EDTT-------- | |
157 RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV----- | |
158 ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S | |
159 TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK | |
160 FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV | |
161 QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------ | |
162 ---------------------------------------------------VAAQQK--- | |
163 ------------------------------------------------------------ | |
164 --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA- | |
165 NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK | |
166 -VDD-GS--EVST-SRTEVSSVS-NSSV-------------------------------- | |
167 --------------------------------------------SPA------------- | |
168 ------ | |
169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] | |
170 -------------------MS---------------------------SNSS-------- | |
171 QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST----- | |
172 ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S | |
173 SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ | |
174 FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN-- | |
175 NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------ | |
176 ---------------------------------------------------AAAQQK--- | |
177 ------------------------------------------------------------ | |
178 --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT- | |
179 HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR | |
180 -TGK-AS--PGTPGPHADVTAAGLRNKV-------------------------------- | |
181 --------------------------------------------MPAHP---V------- | |
182 ------ | |
183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] | |
184 ----------MESGNVSSSLFGNVST----------ALRPEARL----SA---------- | |
185 -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP | |
186 PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T | |
187 PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K | |
188 MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT | |
189 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ | |
190 ---------------------------------------------------LRDQAKKM- | |
191 --------------------------------NVESL----------------------- | |
192 -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF- | |
193 GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N | |
194 EKAP-ES-SAVASTSTTQEP-QQ-TTAA-------------------------------- | |
195 ------------------------------------------------------------ | |
196 ------ | |
197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 | |
198 ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA---------- | |
199 -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP | |
200 PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T | |
201 PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K | |
202 MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT | |
203 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------ | |
204 ---------------------------------------------------LRDQAKKM- | |
205 --------------------------------NVDSL----------------------- | |
206 -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF- | |
207 GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S | |
208 EKAP-ES-RAAISTSTTQEQ-QQ-TTAA-------------------------------- | |
209 ------------------------------------------------------------ | |
210 ------ | |
211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] | |
212 ----------ME------PLCNASEP----------PLRPEAR-----SSGN-------- | |
213 GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP | |
214 PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A | |
215 PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N | |
216 MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT | |
217 RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------ | |
218 ---------------------------------------------------LREQAKKM- | |
219 --------------------------------NVESL----------------------- | |
220 -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- | |
221 GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N | |
222 EKSG-EI-SSAQST-TTQEQ-QQ-TTAA-------------------------------- | |
223 ------------------------------------------------------------ | |
224 ------ | |
225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 | |
226 ----------MD------ALCNASEP----------PLRPEARM----SSGS-------- | |
227 DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP | |
228 PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A | |
229 PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N | |
230 MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT | |
231 RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------ | |
232 ---------------------------------------------------LREQAKKM- | |
233 --------------------------------NVESL----------------------- | |
234 -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF- | |
235 GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N | |
236 EKSG-EA-SSAQST-TTQEQTQQ-TSAA-------------------------------- | |
237 ------------------------------------------------------------ | |
238 ------ | |
239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 | |
240 -------------------MTNATGP----------QMAYYGAA----SMD--------- | |
241 -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV | |
242 NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V | |
243 PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK | |
244 LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT | |
245 FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------ | |
246 ---------------------------------------------------MRAQAKKM- | |
247 --------------------------------NVSTL----------------------- | |
248 -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM- | |
249 GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET | |
250 ETKS-ND-DSQSNSTVAQDKA--------------------------------------- | |
251 ------------------------------------------------------------ | |
252 ------ | |
253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 | |
254 -------------------MANVTGP----------QMAFYGSG----AAT--------- | |
255 -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV | |
256 NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F | |
257 PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK | |
258 LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT | |
259 ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------ | |
260 ---------------------------------------------------MRAQAKKM- | |
261 --------------------------------NVTNL----------------------- | |
262 -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL- | |
263 GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK | |
264 DPND-VE-ENQSSNTQTQEKS--------------------------------------- | |
265 ------------------------------------------------------------ | |
266 ------ | |
267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] | |
268 ----------ME---SFAVAAAQLGP----------HFAPLS------------------ | |
269 ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM | |
270 DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T | |
271 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP | |
272 MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP | |
273 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ | |
274 ---------------------------------------------------MREQAKKM- | |
275 --------------------------------NVKSL----------------------- | |
276 -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- | |
277 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV | |
278 DDGK-SS-DAQSQATASEAESKA------------------------------------- | |
279 ------------------------------------------------------------ | |
280 ------ | |
281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] | |
282 ----------ME---SFAVAAAQLGP----------HFAPLS------------------ | |
283 ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM | |
284 DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T | |
285 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP | |
286 MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP | |
287 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ | |
288 ---------------------------------------------------MREQAKKM- | |
289 --------------------------------NVKSL----------------------- | |
290 -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF- | |
291 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV | |
292 DDGK-SS-DAQSQATASEAESKA------------------------------------- | |
293 ------------------------------------------------------------ | |
294 ------ | |
295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' | |
296 ----------MD---SFAAVATQLGP----------QFAAPS------------------ | |
297 ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM | |
298 DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T | |
299 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP | |
300 MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP | |
301 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------ | |
302 ---------------------------------------------------MREQAKKM- | |
303 --------------------------------NVKSL----------------------- | |
304 -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF- | |
305 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV | |
306 DDGK-SS-EAQSQATTSEAESKA------------------------------------- | |
307 ------------------------------------------------------------ | |
308 ------ | |
309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] | |
310 -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG---------------- | |
311 ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM | |
312 DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S | |
313 PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP | |
314 MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP | |
315 RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------ | |
316 ---------------------------------------------------MREQAKKM- | |
317 --------------------------------NVKSL----------------------- | |
318 -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF- | |
319 KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT | |
320 DEPKPDA-PASDTETTSEADSKA------------------------------------- | |
321 ------------------------------------------------------------ | |
322 ------ | |
323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 | |
324 -----MERSLLP---EPPLAMALLGP----------RFEAQTGG---------------- | |
325 ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM | |
326 DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S | |
327 PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP | |
328 MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP | |
329 RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------ | |
330 ---------------------------------------------------MRDQAKKM- | |
331 --------------------------------NVKSL----------------------- | |
332 -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF- | |
333 KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT | |
334 DEPKPDA-PPSDTETTSEAESKD------------------------------------- | |
335 ------------------------------------------------------------ | |
336 ------ | |
337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] | |
338 -------------------MIAVSGP----------SYEAFSYG----GQA--------- | |
339 ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL | |
340 NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S | |
341 PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP | |
342 LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS | |
343 ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------ | |
344 ---------------------------------------------------MREQAKKM- | |
345 --------------------------------NVASL----------------------- | |
346 -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF- | |
347 NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA | |
348 EPSS-DA-VSTTSGTTTVTDNEK-SNA--------------------------------- | |
349 ------------------------------------------------------------ | |
350 ------ | |
351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] | |
352 ---------------------MANQL----------SYSSLGWP----YQP--------- | |
353 ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM | |
354 NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M | |
355 PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP | |
356 LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS | |
357 ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------ | |
358 ---------------------------------------------------LREQAKKM- | |
359 --------------------------------NVASL----------------------- | |
360 -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF- | |
361 SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG | |
362 ESGS-DV-KSEASATTTMEEKPK-IPEA-------------------------------- | |
363 ------------------------------------------------------------ | |
364 ------ | |
365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] | |
366 ------------------------------------MVESTTLV----NQT--------- | |
367 -----WWY--NPTVD----------------------------------IHPHWAKFDPI | |
368 PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF | |
369 PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK | |
370 MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST | |
371 RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------ | |
372 ---------------------------------------------------MAAMAKRL- | |
373 --------------------------------NAKEL----------------------- | |
374 -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF- | |
375 GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC | |
376 EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP | |
377 QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA | |
378 ------ | |
379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] | |
380 -------------------------------------MGRDLRD----NET--------- | |
381 -----WWY--NPSIV----------------------------------VHPHWREFDQV | |
382 PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF | |
383 PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK | |
384 MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT | |
385 RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------ | |
386 ---------------------------------------------------MAAMAKRL- | |
387 --------------------------------NAKEL----------------------- | |
388 -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF- | |
389 GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET | |
390 EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP | |
391 QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA | |
392 ------ | |
393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra | |
394 ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS | |
395 WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y | |
396 GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M | |
397 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR | |
398 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- | |
399 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- | |
400 ----------------------------------P--------GFPR----VEPDS---- | |
401 ---VIAL-----------------NGIVKLQ--------KEVEECAN------------- | |
402 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI | |
403 CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- | |
404 -----NINRKLSAAGMHEALKLA------------------------------------- | |
405 -------------------------------------------ERPERPEFVLQNADYCR | |
406 KKGHDS | |
407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] | |
408 ------------------------------------------------------------ | |
409 -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y | |
410 GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M | |
411 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR | |
412 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- | |
413 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- | |
414 ----------------------------------P--------GFPR----VQPES---- | |
415 ---VISL-----------------NGVVKLQ--------KEVEECAN------------- | |
416 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI | |
417 CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR--------- | |
418 -----NINRKLSAAGMHEALKLA------------------------------------- | |
419 -------------------------------------------ERPERSEFVLQNSDHCG | |
420 KKGHDT | |
421 > 31=p A47425 serotonin receptor 5HT-7 - rat | |
422 ------------------------------------------------------------ | |
423 -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y | |
424 GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M | |
425 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR | |
426 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF--------- | |
427 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF--------------------- | |
428 ----------------------------------P--------GFPR----VQPES---- | |
429 ---VISL-----------------NGVVKLQ--------KEVEECAN------------- | |
430 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI | |
431 CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR--------- | |
432 -----NINRKLSAAGMHEALKLA------------------------------------- | |
433 -------------------------------------------ERPERSEFVLQNSDHCG | |
434 KKGHDT | |
435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] | |
436 ----------MD-------VLSPG------------QGNNTTSPPAPFETGG-------- | |
437 ----------NTTGISDVTV---------------------------------------- | |
438 --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L | |
439 PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK | |
440 RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- | |
441 -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ | |
442 ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR- | |
443 --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG- | |
444 -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- | |
445 CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- | |
446 -----RQ----------------------------------------------------- | |
447 ------------------------------------------------------------ | |
448 ------ | |
449 > 33=p A35181 serotonin receptor class 1A - rat | |
450 ----------MD-------VFSFG------------QGNNTTASQEPFGTGG-------- | |
451 ----------NVTSISDVTF---------------------------------------- | |
452 --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L | |
453 PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK | |
454 RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH--------- | |
455 -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------ | |
456 ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG- | |
457 --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG- | |
458 -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF- | |
459 CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC--------- | |
460 -----RR----------------------------------------------------- | |
461 ------------------------------------------------------------ | |
462 ------ | |
463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] | |
464 MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- | |
465 ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY | |
466 SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M | |
467 PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR | |
468 RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- | |
469 -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE | |
470 YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- | |
471 --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- | |
472 ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- | |
473 VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- | |
474 -----RGHR--------------------------------------------------- | |
475 ------------------------------------------------------------ | |
476 ------ | |
477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail | |
478 MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG-------- | |
479 ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY | |
480 SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M | |
481 PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR | |
482 RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK--------- | |
483 -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE | |
484 YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS-- | |
485 --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS- | |
486 ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF- | |
487 VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR--------- | |
488 -----RGHR--------------------------------------------------- | |
489 ------------------------------------------------------------ | |
490 ------ | |
491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi | |
492 -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW-------- | |
493 ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------ | |
494 --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M | |
495 PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA | |
496 STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV--------- | |
497 -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR------------------------- | |
498 --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI | |
499 AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA | |
500 VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT- | |
501 CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV--------- | |
502 -----RRRRA-------------------------------------------------- | |
503 ---------------------------------------------PQ------------- | |
504 ------ |