comparison test-data/mafft_fftns_result.aln @ 0:a4e086689fae draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13
author rnateam
date Thu, 18 Jun 2015 08:59:56 -0400
parents
children 15974dd17515
comparison
equal deleted inserted replaced
-1:000000000000 0:a4e086689fae
1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 -------------------MNGTE------------------------GDNF--------
3 YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK-----
4 ----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
5 TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR
6 FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN
7 ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------
8 ---------------------------------------------------AAAAQQ---
9 ------------------------------------------------------------
10 --------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-
11 HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN
12 PLGD-DE--SGASTSKTEVSSVS-TSPV--------------------------------
13 --------------------------------------------SPA-------------
14 ------
15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
16 -------------------MNGTE------------------------GPNF--------
17 YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ-----
18 ----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
19 TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR
20 FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN
21 ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------
22 ---------------------------------------------------AAAQQQ---
23 ------------------------------------------------------------
24 --------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-
25 HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN
26 PLGD-DE--ASATASKTE------TSQV--------------------------------
27 --------------------------------------------APA-------------
28 ------
29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
30 -------------------MNGTE------------------------GINF--------
31 YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK-----
32 ----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
33 TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR
34 FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN
35 ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------
36 ---------------------------------------------------AAAQQQ---
37 ------------------------------------------------------------
38 --------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-
39 NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN
40 PFGD-EDVSSTVSQSKTEVSSVS-SSQV--------------------------------
41 --------------------------------------------SPA-------------
42 ------
43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
44 -------------------MNGTE------------------------GKNF--------
45 YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
46 ----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
47 TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
48 FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN
49 ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------
50 ---------------------------------------------------AAAQQQ---
51 ------------------------------------------------------------
52 --------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-
53 NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN
54 PLGD-DE-SSTVSTSKTEVSS------V--------------------------------
55 --------------------------------------------SPA-------------
56 ------
57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
58 -------------------MNGTE------------------------GNNF--------
59 YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
60 ----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
61 TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
62 FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN
63 ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------
64 ---------------------------------------------------AAAQQQ---
65 ------------------------------------------------------------
66 --------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-
67 NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN
68 PLGD-EE-SSTVSTSKTEVSS------V--------------------------------
69 --------------------------------------------SPA-------------
70 ------
71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
72 -------------------MKQVPEF----------------------HEDF--------
73 YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI-----
74 ----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
75 PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT
76 FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN
77 ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------
78 ---------------------------------------------------AAKAQA---
79 ------------------------------------------------------------
80 --------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-
81 HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN
82 -IEE-DE--ASTSSQVTQVSS------V--------------------------------
83 --------------------------------------------APEK------------
84 ------
85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
86 -------------------MRKMS------------------------EEEF--------
87 YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA-----
88 ----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
89 FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR
90 FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS
91 ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------
92 ---------------------------------------------------VAAQQQ---
93 ------------------------------------------------------------
94 --------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-
95 NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA
96 -MTD-ES--DTCSSQKTEVSTVS-STQV--------------------------------
97 --------------------------------------------GPN-------------
98 ------
99 > 8=opsin, greensensitive human (fragment) S07060
100 ------------------------------------------------------------
101 ------------------------------------------------------------
102 --------------------------------------------------DLAETVIA-S
103 TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
104 FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
105 QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
106 ---------------------------------------------------VAKQQK---
107 ------------------------------------------------------------
108 --------------ESESTQK------AEKEVTRMVVVMVLAFC----------------
109 ------------------------------------------------------------
110 ------------------------------------------------------------
111 ------------------------------------------------------------
112 ------
113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
114 -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
115 QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
116 ----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
117 TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR
118 FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
119 QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
120 ---------------------------------------------------VAKQQK---
121 ------------------------------------------------------------
122 --------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-
123 NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
124 -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
125 --------------------------------------------SPA-------------
126 ------
127 > 10== Z68193 1 human Red Opsin <>[]
128 -------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
129 QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
130 ----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
131 TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
132 FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
133 QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------
134 ---------------------------------------------------VAKQQK---
135 ------------------------------------------------------------
136 --------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-
137 NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
138 -VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
139 --------------------------------------------SPA-------------
140 ------
141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
142 -------------------MTEAWNV----------AVFAARRSRDD-DDTT--------
143 RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV-----
144 ----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
145 TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK
146 FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC
147 QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------
148 ---------------------------------------------------VAAQQK---
149 ------------------------------------------------------------
150 --------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-
151 NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK
152 -VDD-GS--EASTTSRTEVSSVS-NSSV--------------------------------
153 --------------------------------------------APA-------------
154 ------
155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
156 -------------------MA-AWEA----------AFAARRRHEE--EDTT--------
157 RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV-----
158 ----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
159 TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK
160 FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV
161 QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------
162 ---------------------------------------------------VAAQQK---
163 ------------------------------------------------------------
164 --------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-
165 NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK
166 -VDD-GS--EVST-SRTEVSSVS-NSSV--------------------------------
167 --------------------------------------------SPA-------------
168 ------
169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
170 -------------------MS---------------------------SNSS--------
171 QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST-----
172 ----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
173 SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ
174 FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--
175 NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------
176 ---------------------------------------------------AAAQQK---
177 ------------------------------------------------------------
178 --------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-
179 HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR
180 -TGK-AS--PGTPGPHADVTAAGLRNKV--------------------------------
181 --------------------------------------------MPAHP---V-------
182 ------
183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
184 ----------MESGNVSSSLFGNVST----------ALRPEARL----SA----------
185 -ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP
186 PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
187 PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K
188 MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT
189 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
190 ---------------------------------------------------LRDQAKKM-
191 --------------------------------NVESL-----------------------
192 -----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-
193 GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N
194 EKAP-ES-SAVASTSTTQEP-QQ-TTAA--------------------------------
195 ------------------------------------------------------------
196 ------
197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
198 ----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA----------
199 -ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP
200 PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
201 PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K
202 MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT
203 RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
204 ---------------------------------------------------LRDQAKKM-
205 --------------------------------NVDSL-----------------------
206 -----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-
207 GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S
208 EKAP-ES-RAAISTSTTQEQ-QQ-TTAA--------------------------------
209 ------------------------------------------------------------
210 ------
211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
212 ----------ME------PLCNASEP----------PLRPEAR-----SSGN--------
213 GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
214 PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
215 PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
216 MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
217 RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------
218 ---------------------------------------------------LREQAKKM-
219 --------------------------------NVESL-----------------------
220 -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
221 GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N
222 EKSG-EI-SSAQST-TTQEQ-QQ-TTAA--------------------------------
223 ------------------------------------------------------------
224 ------
225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
226 ----------MD------ALCNASEP----------PLRPEARM----SSGS--------
227 DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
228 PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
229 PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
230 MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
231 RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------
232 ---------------------------------------------------LREQAKKM-
233 --------------------------------NVESL-----------------------
234 -----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
235 GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N
236 EKSG-EA-SSAQST-TTQEQTQQ-TSAA--------------------------------
237 ------------------------------------------------------------
238 ------
239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
240 -------------------MTNATGP----------QMAYYGAA----SMD---------
241 -----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV
242 NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
243 PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK
244 LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT
245 FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------
246 ---------------------------------------------------MRAQAKKM-
247 --------------------------------NVSTL-----------------------
248 -----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-
249 GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET
250 ETKS-ND-DSQSNSTVAQDKA---------------------------------------
251 ------------------------------------------------------------
252 ------
253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
254 -------------------MANVTGP----------QMAFYGSG----AAT---------
255 -----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV
256 NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
257 PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK
258 LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT
259 ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------
260 ---------------------------------------------------MRAQAKKM-
261 --------------------------------NVTNL-----------------------
262 -----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-
263 GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK
264 DPND-VE-ENQSSNTQTQEKS---------------------------------------
265 ------------------------------------------------------------
266 ------
267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
268 ----------ME---SFAVAAAQLGP----------HFAPLS------------------
269 ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
270 DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
271 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
272 MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP
273 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
274 ---------------------------------------------------MREQAKKM-
275 --------------------------------NVKSL-----------------------
276 -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
277 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
278 DDGK-SS-DAQSQATASEAESKA-------------------------------------
279 ------------------------------------------------------------
280 ------
281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
282 ----------ME---SFAVAAAQLGP----------HFAPLS------------------
283 ----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
284 DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
285 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
286 MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
287 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
288 ---------------------------------------------------MREQAKKM-
289 --------------------------------NVKSL-----------------------
290 -----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
291 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
292 DDGK-SS-DAQSQATASEAESKA-------------------------------------
293 ------------------------------------------------------------
294 ------
295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
296 ----------MD---SFAAVATQLGP----------QFAAPS------------------
297 ----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM
298 DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
299 PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
300 MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
301 RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
302 ---------------------------------------------------MREQAKKM-
303 --------------------------------NVKSL-----------------------
304 -----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-
305 KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
306 DDGK-SS-EAQSQATTSEAESKA-------------------------------------
307 ------------------------------------------------------------
308 ------
309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
310 -----MERSHLP---ETPFDLAHSGP----------RFQAQSSG----------------
311 ----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM
312 DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
313 PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
314 MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP
315 RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------
316 ---------------------------------------------------MREQAKKM-
317 --------------------------------NVKSL-----------------------
318 -----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-
319 KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT
320 DEPKPDA-PASDTETTSEADSKA-------------------------------------
321 ------------------------------------------------------------
322 ------
323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
324 -----MERSLLP---EPPLAMALLGP----------RFEAQTGG----------------
325 ----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM
326 DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
327 PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
328 MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP
329 RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------
330 ---------------------------------------------------MRDQAKKM-
331 --------------------------------NVKSL-----------------------
332 -----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-
333 KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT
334 DEPKPDA-PPSDTETTSEAESKD-------------------------------------
335 ------------------------------------------------------------
336 ------
337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
338 -------------------MIAVSGP----------SYEAFSYG----GQA---------
339 ----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL
340 NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
341 PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP
342 LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS
343 ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------
344 ---------------------------------------------------MREQAKKM-
345 --------------------------------NVASL-----------------------
346 -----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-
347 NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA
348 EPSS-DA-VSTTSGTTTVTDNEK-SNA---------------------------------
349 ------------------------------------------------------------
350 ------
351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
352 ---------------------MANQL----------SYSSLGWP----YQP---------
353 ----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM
354 NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
355 PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP
356 LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS
357 ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------
358 ---------------------------------------------------LREQAKKM-
359 --------------------------------NVASL-----------------------
360 -----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-
361 SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG
362 ESGS-DV-KSEASATTTMEEKPK-IPEA--------------------------------
363 ------------------------------------------------------------
364 ------
365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
366 ------------------------------------MVESTTLV----NQT---------
367 -----WWY--NPTVD----------------------------------IHPHWAKFDPI
368 PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
369 PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK
370 MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST
371 RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------
372 ---------------------------------------------------MAAMAKRL-
373 --------------------------------NAKEL-----------------------
374 -----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-
375 GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC
376 EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
377 QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA
378 ------
379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
380 -------------------------------------MGRDLRD----NET---------
381 -----WWY--NPSIV----------------------------------VHPHWREFDQV
382 PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
383 PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK
384 MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT
385 RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------
386 ---------------------------------------------------MAAMAKRL-
387 --------------------------------NAKEL-----------------------
388 -----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-
389 GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET
390 EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
391 QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA
392 ------
393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
394 ---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS
395 WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y
396 GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
397 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
398 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
399 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
400 ----------------------------------P--------GFPR----VEPDS----
401 ---VIAL-----------------NGIVKLQ--------KEVEECAN-------------
402 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
403 CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
404 -----NINRKLSAAGMHEALKLA-------------------------------------
405 -------------------------------------------ERPERPEFVLQNADYCR
406 KKGHDS
407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
408 ------------------------------------------------------------
409 -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
410 GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
411 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
412 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
413 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
414 ----------------------------------P--------GFPR----VQPES----
415 ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
416 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
417 CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------
418 -----NINRKLSAAGMHEALKLA-------------------------------------
419 -------------------------------------------ERPERSEFVLQNSDHCG
420 KKGHDT
421 > 31=p A47425 serotonin receptor 5HT-7 - rat
422 ------------------------------------------------------------
423 -MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
424 GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
425 PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
426 QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
427 -GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
428 ----------------------------------P--------GFPR----VQPES----
429 ---VISL-----------------NGVVKLQ--------KEVEECAN-------------
430 -----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
431 CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
432 -----NINRKLSAAGMHEALKLA-------------------------------------
433 -------------------------------------------ERPERSEFVLQNSDHCG
434 KKGHDT
435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
436 ----------MD-------VLSPG------------QGNNTTSPPAPFETGG--------
437 ----------NTTGISDVTV----------------------------------------
438 --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
439 PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
440 RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
441 -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
442 ---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-
443 --------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-
444 -PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
445 CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
446 -----RQ-----------------------------------------------------
447 ------------------------------------------------------------
448 ------
449 > 33=p A35181 serotonin receptor class 1A - rat
450 ----------MD-------VFSFG------------QGNNTTASQEPFGTGG--------
451 ----------NVTSISDVTF----------------------------------------
452 --SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
453 PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
454 RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
455 -GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
456 ---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-
457 --------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-
458 -SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
459 CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
460 -----RR-----------------------------------------------------
461 ------------------------------------------------------------
462 ------
463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
464 MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
465 ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
466 SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
467 PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
468 RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
469 -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
470 YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
471 --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
472 ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
473 VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
474 -----RGHR---------------------------------------------------
475 ------------------------------------------------------------
476 ------
477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
478 MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
479 ----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
480 SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
481 PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
482 RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
483 -GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
484 YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
485 --------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
486 ------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
487 VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
488 -----RGHR---------------------------------------------------
489 ------------------------------------------------------------
490 ------
491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
492 -MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW--------
493 ----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------
494 --------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
495 PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA
496 STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV---------
497 -GYQIFATASSFYVPVLIILILYWRIYQTARKRIR-------------------------
498 --------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI
499 AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA
500 VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-
501 CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------
502 -----RRRRA--------------------------------------------------
503 ---------------------------------------------PQ-------------
504 ------