Mercurial > repos > rnateam > mafft
comparison test-data/mafft_custom_result.aln @ 7:aaefa93c2dd2 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit eff9db2cd18c82a7de37851571b8989b48014c71"
| author | rnateam |
|---|---|
| date | Wed, 15 Apr 2020 15:33:37 -0400 |
| parents | |
| children |
comparison
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| 6:c5908940967d | 7:aaefa93c2dd2 |
|---|---|
| 1 CLUSTAL format alignment by MAFFT F-INS-i (v7.455) | |
| 2 | |
| 3 | |
| 4 1== MN------------------------GTE--GDNFYVPFS--------NKTGL-ARSPYE | |
| 5 2== MN------------------------GTE--GPNFYVPFS--------NITGV-VRSPFE | |
| 6 3== MN------------------------GTE--GINFYVPMS--------NKTGV-VRSPFE | |
| 7 4=p MN------------------------GTE--GKNFYVPMS--------NRTGL-VRSPFE | |
| 8 5=p MN------------------------GTE--GNNFYVPLS--------NRTGL-VRSPFE | |
| 9 6== MK------------------------QVPEFHEDFYIPIP-------LDINNLSAYSPFL | |
| 10 7== MR------------------------KMS--EEEFYL------------FKNISSVGPWD | |
| 11 8=opsin, ------------------------------------------------------------ | |
| 12 9== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE | |
| 13 10== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE | |
| 14 11== MTEAWNVAVFAARRSRDD------DDTTR--GSVFTYTNT--------NN----TRGPFE | |
| 15 12== MA-AWEAA-FAARRRHEE------EDTTR--DSVFTYTNS--------NN----TRGPFE | |
| 16 13== MS----------------------SNSSQ--------------AP--PNG----TPGPFD | |
| 17 14== MESG-NV-----------------------------------------SSSLFGNVSTAL | |
| 18 15== MEYH-NV------------------------------------------SSVLGNVSSVL | |
| 19 16== MEPLCNA------------------------------------------------SEPPL | |
| 20 17== MDALCNA------------------------------------------------SEPPL | |
| 21 18== MT-------------------------------------------------------NAT | |
| 22 19== MA-------------------------------------------------------NVT | |
| 23 20== ME-------------------------------------------------SFAVAAAQL | |
| 24 21== ME-------------------------------------------------SFAVAAAQL | |
| 25 22== MD-------------------------------------------------SFAAVATQL | |
| 26 23== MERS--------------------------------------------HLPETPFDLAHS | |
| 27 24== MERS--------------------------------------------LLPEPPLAMALL | |
| 28 25== MI-------------------------------------------------------AVS | |
| 29 26== M----------------------------------------------------------- | |
| 30 27== MVESTT------------------------------------------------------ | |
| 31 28== MGRD-------------------------------------------------------- | |
| 32 29== MM-----DVNSSGRPDLYGH-----------LRSFLLPEVGRGLPDLSPDGGADPVAGSW | |
| 33 30== M----------------------------------------------------------- | |
| 34 31=p M----------------------------------------------------------- | |
| 35 32== MD------VLSPGQ----------------------------------GNNTTSPPAPFE | |
| 36 33=p MD------VFSFGQ----------------------------------GNNTTASQEPFG | |
| 37 34== MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL | |
| 38 35=p MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL | |
| 39 36== ME-------GAEGQEELD-------------WEALYLRL---------PLQNCSWNSTGW | |
| 40 | |
| 41 | |
| 42 1== YP---------------------------------------------------------- | |
| 43 2== QP---------------------------------------------------------- | |
| 44 3== YP---------------------------------------------------------- | |
| 45 4=p YP---------------------------------------------------------- | |
| 46 5=p YP---------------------------------------------------------- | |
| 47 6== VP---------------------------------------------------------- | |
| 48 7== GP---------------------------------------------------------- | |
| 49 8=opsin, ------------------------------------------------------------ | |
| 50 9== GP---------------------------------------------------------- | |
| 51 10== GP---------------------------------------------------------- | |
| 52 11== GP---------------------------------------------------------- | |
| 53 12== GP---------------------------------------------------------- | |
| 54 13== GP---------------------------------------------------------- | |
| 55 14== RPEARL----------------------SAETRLLGWNVPPEELRHIPEHWL-------- | |
| 56 15== RPDARL----------------------SAESRLLGWNVPPDELRHIPEHWL-------- | |
| 57 16== RPEAR-SSG-------------------NGDLQFLGWNVPPDQIQYIPEHWL-------- | |
| 58 17== RPEARMSSG-------------------SDELQFLGWNVPPDQIQYIPEHWL-------- | |
| 59 18== GPQMAYYGAASMDFG-------------YPEGVSIVDFVRPEIKPYVHQHWY-------- | |
| 60 19== GPQMAFYGSGAATFG-------------YPEGMTVADFVPDRVKHMVLDHWY-------- | |
| 61 20== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- | |
| 62 21== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- | |
| 63 22== GPQFAAPS-----------------------NGSVVDKVTPDMAHLISPYWD-------- | |
| 64 23== GPRFQAQSSG---------------------NGSVLDNVLPDMAHLVNPYWS-------- | |
| 65 24== GPRFEAQTGG---------------------NRSVLDNVLPDMAPLVNPHWS-------- | |
| 66 25== GPSYEAFSYG--GQA-------------RFNNQTVVDKVPPDMLHLIDANWY-------- | |
| 67 26== -ANQLSYSSL--GWP-------------YQPNASVVDTMPKEMLYMIHEHWY-------- | |
| 68 27== ----------LVNQT-------------WWYNPTV----------DIHPHWA-------- | |
| 69 28== ---------LRDNET-------------WWYNPSI----------VVHPHWR-------- | |
| 70 29== APHLLS-----------------------------------EVTASPAPTWDAPPDNASG | |
| 71 30== -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG | |
| 72 31=p -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG | |
| 73 32== TG--------------------------------------GNTTGI-------------- | |
| 74 33=p TG--------------------------------------GNVTSI-------------- | |
| 75 34== SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- | |
| 76 35=p SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- | |
| 77 36== EPNW-------------------------------------NVTVVPNTTWWQ------- | |
| 78 | |
| 79 | |
| 80 1== -----QY-YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAM | |
| 81 2== -----QY-YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAV | |
| 82 3== -----QY-YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAV | |
| 83 4=p -----QY-YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAV | |
| 84 5=p -----QY-YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAV | |
| 85 6== -----QD-HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSI | |
| 86 7== -----QY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF | |
| 87 8=opsin, ------------------------------------------------------------ | |
| 88 9== -----NY-HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAV | |
| 89 10== -----NY-HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAV | |
| 90 11== -----NY-HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAF | |
| 91 12== -----NY-HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV | |
| 92 13== -----QWPYQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAV | |
| 93 14== -----TY-PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAF | |
| 94 15== -----IY-PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAF | |
| 95 16== -----TQ-LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAV | |
| 96 17== -----TQ-LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAV | |
| 97 18== -----NY-PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLAL | |
| 98 19== -----NY-PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLAL | |
| 99 20== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI | |
| 100 21== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI | |
| 101 22== -----QF-PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI | |
| 102 23== -----RF-APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF | |
| 103 24== -----RF-APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF | |
| 104 25== -----QY-PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAI | |
| 105 26== -----AF-PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAF | |
| 106 27== -----KF-DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAM | |
| 107 28== -----EF-DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAF | |
| 108 29== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLAL | |
| 109 30== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL | |
| 110 31=p CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL | |
| 111 32== SDVTVSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV | |
| 112 33=p SDVTFSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV | |
| 113 34== TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV | |
| 114 35=p TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV | |
| 115 36== --ASAPFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAV | |
| 116 | |
| 117 | |
| 118 1== ANLFMVLFG-FTVTMYTSMNG-YFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYI | |
| 119 2== ADLFMVFGG-FTTTLYTSLHG-YFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYV | |
| 120 3== ADLFMACFG-FTVTFYTAWNG-YFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYI | |
| 121 4=p AGTIMVCFG-FTVTFYTAING-YFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI | |
| 122 5=p AGAIMVCFG-FTVTFYTAING-YFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI | |
| 123 6== ANLFVAIFG-SPLSFYSFFNR-YFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWL | |
| 124 7== GGFLLCIFS-VFPVFVASCNG-YFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYI | |
| 125 8=opsin, -DLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL | |
| 126 9== ADLAETVIA-STISVVNQVYG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWM | |
| 127 10== ADLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL | |
| 128 11== VDLVETLVA-STISVFNQIFG-YFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWF | |
| 129 12== ADLGETVIA-STISVINQISG-YFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWF | |
| 130 13== ADLLVTLCG-SSVSLSNNING-FFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYV | |
| 131 14== CDFMMMVK--TPIFIYNSFHQ-GYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFN | |
| 132 15== CDFMMMIK--TPIFIYNSFHQ-GYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYN | |
| 133 16== FDLIMCLK--APIF--NSFHR-GFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN | |
| 134 17== FDLIMCLK--APIFIYNSFHR-GFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN | |
| 135 18== SDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYN | |
| 136 19== SDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYN | |
| 137 20== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ | |
| 138 21== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ | |
| 139 22== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ | |
| 140 23== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYN | |
| 141 24== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYN | |
| 142 25== SNFLMMFCM-SPPMVINCYYE-TWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYN | |
| 143 26== SDFCMMAFM-MPTMTSNCFAE-TWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYN | |
| 144 27== SDLSFSAINGFPLKTISAFMK-KWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYN | |
| 145 28== SDFTFSLVNGFPLMTISCFLK-KWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYN | |
| 146 29== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL | |
| 147 30== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL | |
| 148 31=p ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL | |
| 149 32== TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW | |
| 150 33=p TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW | |
| 151 34== ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW | |
| 152 35=p ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW | |
| 153 36== ADLLVACLV-MPLGAVYEVVQ-RWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYW | |
| 154 . : : * : : :*: | |
| 155 | |
| 156 1== VICKPMGNFR-FGNTHAIMGVAFTWIMALACA-APPLV-GWSRYIPEGMQCSCGPDYYTL | |
| 157 2== VVCKPMSNFR-FGENHAIMGVAFTWVMALACA-APPLV-GWSRYIPEGMQCSCGIDYYTL | |
| 158 3== VVCKPMGNFR-FSATHAMMGIAFTWVMAFSCA-APPLF-GWSRYMPEGMQCSCGPDYYTH | |
| 159 4=p VVCKPMGSFK-FSSSHAFAGIAFTWVMALACA-APPLF-GWSRYIPEGMQCSCGPDYYTL | |
| 160 5=p VVCKPMGSFK-FSSTHASAGIAFTWVMAMACA-APPLV-GWSRYIPEGIQCSCGPDYYTL | |
| 161 6== VICKPLGNFT-FKTPHAIAGCILPWISALAAS-LPPLF-GWSRYIPEGLQCSCGPDWYTT | |
| 162 7== VICKPFGNFR-FSSKHALTVVLATWTIGIGVS-IPPFF-GWSRFIPEGLQCSCGPDWYTV | |
| 163 8=opsin, VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG | |
| 164 9== VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG | |
| 165 10== VVCKPFGNVR-FDAKLAIVGIAFSWIWSAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG | |
| 166 11== VVCKPFGNIK-FDSKLAIIGIVFSWVWAWGWS-APPIF-GWSRYWPHGLKTSCGPDVFSG | |
| 167 12== VVCKPFGNIK-FDGKLAVAGILFSWLWSCAWT-APPIF-GWSRYWPHGLKTSCGPDVFSG | |
| 168 13== VVCKPLGDFQ-FQRRHAVSGCAFTWGWALLWS-APPLL-GWSSYVPEGLRTSCGPNWYTG | |
| 169 14== VITRPMEGK--MTHGKAIAMIIFIYMYATPWV-VACYTETWGRFVPEGYLTSCTFDYLTD | |
| 170 15== VITRPMEGK--MTHGKAIAMIIFIYLYATPWV-VACYTESWGRFVPEGYLTSCTFDYLTD | |
| 171 16== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD | |
| 172 17== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD | |
| 173 18== IICNGFNGPK-LTTGKAVVFALISWVIAIGCA-LPPFF-GWGNYILEGILDSCSYDYLTQ | |
| 174 19== IICNGFNGPK-LTQGKATFMCGLAWVISVGWS-LPPFF-GWGSYTLEGILDSCSYDYFTR | |
| 175 20== VIVKGMAGRP-MTIPLALGKM----------------------YVPEGNLTSCGIDYLER | |
| 176 21== VIVKGMAGRP-MTIPLALGKIAYIWFMSSIWC-LAPAF-GWSRYVPEGNLTSCGIDYLER | |
| 177 22== VIVKGMAGRP-MTIPLALGKIAYIWFMSTIWCCLAPVF-GWSRYVPEGNLTSCGIDYLER | |
| 178 23== VIVKGINGTP-MTIKTSIMKILFIWMMAVFWT-VMPLI-GWSAYVPEGNLTACSIDYMTR | |
| 179 24== VIVKGINGTP-MTIKTSIMKIAFIWMMAVFWT-IMPLI-GWSSYVPEGNLTACSIDYMTR | |
| 180 25== VIVKGLSGKP-LSINGALIRIIAIWLFSLGWT-IAPMF-GWNRYVPEGNMTACGTDYFNR | |
| 181 26== VIVRGMAAAP-LTHKKATLLLLFVWIWSGGWT-ILPFF-GWSRYVPEGNLTSCTVDYLTK | |
| 182 27== VIGRPMAASKKMSHRRAFLMIIFVWMWSIVWS-VGPVF-NWGAYVPEGILTSCSFDYLST | |
| 183 28== VIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA-IGPIF-GWGAYTLEGVLCNCSFDYISR | |
| 184 29== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ | |
| 185 30== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ | |
| 186 31=p GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ | |
| 187 32== AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK | |
| 188 33=p AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK | |
| 189 34== AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ | |
| 190 35=p AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ | |
| 191 36== AVTN-IDYIHASTAKRVGMMIACVWTVSFFVC-IAQLL-GWKDPDWNQRVSEDLRCVVSQ | |
| 192 : : | |
| 193 | |
| 194 1== NPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQE--------------- | |
| 195 2== KPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQE--------------- | |
| 196 3== NPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQE--------------- | |
| 197 4=p NPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQD--------------- | |
| 198 5=p NPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQD--------------- | |
| 199 6== NNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQAD--------------- | |
| 200 7== GTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQE--------------- | |
| 201 8=opsin, SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- | |
| 202 9== SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- | |
| 203 10== SSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKE--------------- | |
| 204 11== SVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKE--------------- | |
| 205 12== SSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKE--------------- | |
| 206 13== GS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKE--------------- | |
| 207 14== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNV- | |
| 208 15== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLRSNV- | |
| 209 16== NF--DTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNV- | |
| 210 17== NF--DTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLRSNV- | |
| 211 18== DF--NTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLRSN-- | |
| 212 19== DM--NTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLRSN-- | |
| 213 20== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- | |
| 214 21== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- | |
| 215 22== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- | |
| 216 23== MW--NPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSS-- | |
| 217 24== QW--NPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLRSS-- | |
| 218 25== GL--LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSS-- | |
| 219 26== DW--SSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLRANA- | |
| 220 27== DP--STRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- | |
| 221 28== DS--TTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- | |
| 222 29== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- | |
| 223 30== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- | |
| 224 31=p D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- | |
| 225 32== D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP | |
| 226 33=p D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS | |
| 227 34== D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV | |
| 228 35=p D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV | |
| 229 36== D-----VGYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGA-------TARGGVG | |
| 230 * : * : | |
| 231 | |
| 232 1== ------------------------------------------------------------ | |
| 233 2== ------------------------------------------------------------ | |
| 234 3== ------------------------------------------------------------ | |
| 235 4=p ------------------------------------------------------------ | |
| 236 5=p ------------------------------------------------------------ | |
| 237 6== ------------------------------------------------------------ | |
| 238 7== ------------------------------------------------------------ | |
| 239 8=opsin, ------------------------------------------------------------ | |
| 240 9== ------------------------------------------------------------ | |
| 241 10== ------------------------------------------------------------ | |
| 242 11== ------------------------------------------------------------ | |
| 243 12== ------------------------------------------------------------ | |
| 244 13== ------------------------------------------------------------ | |
| 245 14== ------------------------------------------------------------ | |
| 246 15== ------------------------------------------------------------ | |
| 247 16== ------------------------------------------------------------ | |
| 248 17== ------------------------------------------------------------ | |
| 249 18== ------------------------------------------------------------ | |
| 250 19== ------------------------------------------------------------ | |
| 251 20== ------------------------------------------------------------ | |
| 252 21== ------------------------------------------------------------ | |
| 253 22== ------------------------------------------------------------ | |
| 254 23== ------------------------------------------------------------ | |
| 255 24== ------------------------------------------------------------ | |
| 256 25== ------------------------------------------------------------ | |
| 257 26== ------------------------------------------------------------ | |
| 258 27== ------------------------------------------------------------ | |
| 259 28== ------------------------------------------------------------ | |
| 260 29== GFPRVE--------------------------------PDSVI----------ALNGIVK | |
| 261 30== GFPRVQ--------------------------------PESVI----------SLNGVVK | |
| 262 31=p GFPRVQ--------------------------------PESVI----------SLNGVVK | |
| 263 32== A-PQPKKS-VNGESGSRNWRLGVESKAGGAL-----C-----------------ANGAVR | |
| 264 33=p A-PPPKKS-LNGQPGSGDWRRCAENRAVGTP-----C-----------------TNGAVR | |
| 265 34== ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- | |
| 266 35=p ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- | |
| 267 36== PPPVPAGGALVAGGGSGGIAAAVVAVIGR---------PLPTISET-------TTTGFTN | |
| 268 | |
| 269 | |
| 270 1== ------------------------------------------------------------ | |
| 271 2== ------------------------------------------------------------ | |
| 272 3== ------------------------------------------------------------ | |
| 273 4=p ------------------------------------------------------------ | |
| 274 5=p ------------------------------------------------------------ | |
| 275 6== ------------------------------------------------------------ | |
| 276 7== ------------------------------------------------------------ | |
| 277 8=opsin, ------------------------------------------------------------ | |
| 278 9== ------------------------------------------------------------ | |
| 279 10== ------------------------------------------------------------ | |
| 280 11== ------------------------------------------------------------ | |
| 281 12== ------------------------------------------------------------ | |
| 282 13== ------------------------------------------------------------ | |
| 283 14== ------------------------------------------------------------ | |
| 284 15== ------------------------------------------------------------ | |
| 285 16== ------------------------------------------------------------ | |
| 286 17== ------------------------------------------------------------ | |
| 287 18== ------------------------------------------------------------ | |
| 288 19== ------------------------------------------------------------ | |
| 289 20== ------------------------------------------------------------ | |
| 290 21== ------------------------------------------------------------ | |
| 291 22== ------------------------------------------------------------ | |
| 292 23== ------------------------------------------------------------ | |
| 293 24== ------------------------------------------------------------ | |
| 294 25== ------------------------------------------------------------ | |
| 295 26== ------------------------------------------------------------ | |
| 296 27== ------------------------------------------------------------ | |
| 297 28== ------------------------------------------------------------ | |
| 298 29== -------------LQKEVEEC-AN------------------LSRLLKHER--------- | |
| 299 30== -------------LQKEVEEC-AN------------------LSRLLKHER--------- | |
| 300 31=p -------------LQKEVEEC-AN------------------LSRLLKHER--------- | |
| 301 32== QGDDGAALEV-----IEVHRV-GNSKEHLPLPSEAGP--TPCAPASFERKNERN------ | |
| 302 33=p QGDDEATLEV-----IEVHRV-GNSKEHLPLPSESGS--NSYAPACLERKNERN------ | |
| 303 34== -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN | |
| 304 35=p -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN | |
| 305 36== VSSNNTSP--------EKQSC-ANGLEADPPTTGYGAVAAAYYPSLVRRKP--------- | |
| 306 | |
| 307 | |
| 308 1== --------SASTQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT--HQGSDFGAT-FM | |
| 309 2== --------SATTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT--HQGSNFGPI-FM | |
| 310 3== --------SATTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT--NKGADFTAT-LM | |
| 311 4=p --------SASTQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF--NKGADFSAK-FM | |
| 312 5=p --------SASTQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF--NKGAAFSAQ-FM | |
| 313 6== --------SASTQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS--HRGEEFDLR-MA | |
| 314 7== --------SATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN--NRNHGLDLR-LV | |
| 315 8=opsin, --------SESTQKAEKEVTRMVVVMVLAFC----------------------------- | |
| 316 9== --------SESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA--NPGYPFHPL-MA | |
| 317 10== --------SESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA--NPGYAFHPL-MA | |
| 318 11== --------SESTQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA--NPGYAFHPL-AA | |
| 319 12== --------SESTQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA--NPGYAFHPL-AA | |
| 320 13== --------ADTTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT--HKGIIIQPV-LA | |
| 321 14== --------DKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF--GDKTLLTPG-AT | |
| 322 15== --------DKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF--GDKTLLTPG-AT | |
| 323 16== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTQG-AT | |
| 324 17== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTPG-AT | |
| 325 18== --------EADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM--GDTSGITPL-VS | |
| 326 19== --------EAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL--GNAEGITPL-LT | |
| 327 20== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT | |
| 328 21== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT | |
| 329 22== --------EDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT | |
| 330 23== --------EDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF--KI-DGLTPL-TT | |
| 331 24== --------EDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF--KI-DGLTPL-TT | |
| 332 25== --------ENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF--NL-VKISPL-FT | |
| 333 26== --------DQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF--SSGTRLTPL-AT | |
| 334 27== --------Q-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF--GPAEWVTPY-AA | |
| 335 28== --------Q-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF--GPLEWVTPY-AA | |
| 336 29== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE | |
| 337 30== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE | |
| 338 31=p -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE | |
| 339 32== ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPTL-LG | |
| 340 33=p ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPAL-LG | |
| 341 34== DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR | |
| 342 35=p DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR | |
| 343 36== -------KEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-CD--CEVSPV-LT | |
| 344 * . : | |
| 345 | |
| 346 1== TLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----CC-----GKNPLGDDE-SGA-S | |
| 347 2== TLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----CC-----GKNPLGDDE-ASA-T | |
| 348 3== AVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----CC-----GKNPFGDEDVSSTVS | |
| 349 4=p AIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----FC-----GKNPLGDDE-SSTVS | |
| 350 5=p AIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----FC-----GKNPLGDEE-SSTVS | |
| 351 6== TIPSCLSKASTVYNPVIYVLMNKQFRSCMMK-M-----VC-----GKN-IEEDE-AST-S | |
| 352 7== TIPSFFSKSACIYNPIIYCFMNKQFQACIMK-M-----VC-----GKA-MTDES-DTC-S | |
| 353 8=opsin, ------------------------------------------------------------ | |
| 354 9== ALPAFFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S | |
| 355 10== ALPAYFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S | |
| 356 11== ALPAYFAKSATIYNPVIYVFMNRQFRNCIMQ-L-----F------GKK-VDDGS-EAS-T | |
| 357 12== ALPAYFAKSATIYNPIIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-EVS-T | |
| 358 13== SLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----CC-----GYQPQRTGKASPGTP | |
| 359 14== MIPACACKMVACIDPFVYAISHPRYRMELQKRCPW---LALN---EK----APE-SSA-V | |
| 360 15== MIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW---LAIS---EK----APE-SRA-A | |
| 361 16== MIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW---LGVN---EK----SGE-ISS-A | |
| 362 17== MIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW---LGVN---EK----SGE-ASS-A | |
| 363 18== TLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW---FCVH---ET----ETK-SND-D | |
| 364 19== TLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW---FCVH---EK----DPN-DVE-E | |
| 365 20== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A | |
| 366 21== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A | |
| 367 22== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSE-A | |
| 368 23== IWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP----MCVF---GNT--DEPK-PDA-P | |
| 369 24== IWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP----MCVC---GTT--DEPK-PDA-P | |
| 370 25== IWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP----SLAC---AA----EPS-SDA-V | |
| 371 26== IWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP----SLAC---GS---GESG-SDV-K | |
| 372 27== ELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF---DEK--ECED-AND-A | |
| 373 28== QLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF---DDK--ETED-DKD-A | |
| 374 29== RTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM | |
| 375 30== RTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----QCQYRNINRKL------SAAGM | |
| 376 31=p RTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM | |
| 377 32== AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRQ------------ | |
| 378 33=p AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRR------------ | |
| 379 34== SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ | |
| 380 35=p SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ | |
| 381 36== SLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL------CGRRVRRRR------------ | |
| 382 | |
| 383 | |
| 384 1== TSKTEVSSVSTS------------------------------------------------ | |
| 385 2== ASKTETSQVA-------------------------------------------------- | |
| 386 3== QSKTEVSSVSSS------------------------------------------------ | |
| 387 4=p TSKTEVSSVS-------------------------------------------------- | |
| 388 5=p TSKTEVSSVS-------------------------------------------------- | |
| 389 6== SQVTQVSSVA-------------------------------------------------- | |
| 390 7== SQKTEVSTVSST------------------------------------------------ | |
| 391 8=opsin, ------------------------------------------------------------ | |
| 392 9== ASKTEVSSVS-------------------------------------------------- | |
| 393 10== ASKTEVSSVS-------------------------------------------------- | |
| 394 11== TSRTEVSSVSNS------------------------------------------------ | |
| 395 12== -SRTEVSSVSNS------------------------------------------------ | |
| 396 13== GPHADVTAAGLR------------------------------------------------ | |
| 397 14== ASTS-TTQEPQ------------------------------------------------- | |
| 398 15== ISTS-TTQEQQ------------------------------------------------- | |
| 399 16== QSTT-TQEQ-Q------------------------------------------------- | |
| 400 17== QSTT-TQEQTQ------------------------------------------------- | |
| 401 18== SQSNSTVAQDK------------------------------------------------- | |
| 402 19== NQSSNTQTQEK------------------------------------------------- | |
| 403 20== QSQA-TASEAE------------------------------------------------- | |
| 404 21== QSQA-TASEAE------------------------------------------------- | |
| 405 22== QSQA-TTSEAE------------------------------------------------- | |
| 406 23== ASDTETTSEAD------------------------------------------------- | |
| 407 24== PSDTETTSEAE------------------------------------------------- | |
| 408 25== STTSGTTTVTDN------------------------------------------------ | |
| 409 26== SEASATTTMEEK------------------------------------------------ | |
| 410 27== EEEV-VASERG--GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGA | |
| 411 28== ETEI-PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG- | |
| 412 29== HEALKLAERPERP-----------------EFVLQNA----------------------- | |
| 413 30== HEALKLAERPERS-----------------EFVLQNS----------------------- | |
| 414 31=p HEALKLAERPERS-----------------EFVLQNS----------------------- | |
| 415 32== ------------------------------------------------------------ | |
| 416 33=p ------------------------------------------------------------ | |
| 417 34== ------------------------------------------------------------ | |
| 418 35=p ------------------------------------------------------------ | |
| 419 36== ------------------------------------------------------------ | |
| 420 | |
| 421 | |
| 422 1== --------------------------------------------PVSP-A--- | |
| 423 2== -----------------------------------------------P-A--- | |
| 424 3== --------------------------------------------QVSP-A--- | |
| 425 4=p -----------------------------------------------P-A--- | |
| 426 5=p -----------------------------------------------P-A--- | |
| 427 6== -----------------------------------------------PEK--- | |
| 428 7== --------------------------------------------QVGP-N--- | |
| 429 8=opsin, ----------------------------------------------------- | |
| 430 9== --------------------------------------------SVSP-A--- | |
| 431 10== --------------------------------------------SVSP-A--- | |
| 432 11== --------------------------------------------SVAP-A--- | |
| 433 12== --------------------------------------------SVSP-A--- | |
| 434 13== -------------------------------------------NKVMP-AHPV | |
| 435 14== --------------------------------------------QTTA-A--- | |
| 436 15== --------------------------------------------QTTA-A--- | |
| 437 16== --------------------------------------------QTTA-A--- | |
| 438 17== --------------------------------------------QTSA-A--- | |
| 439 18== -------------------------------------------------A--- | |
| 440 19== -------------------------------------------------S--- | |
| 441 20== ----------------------------------------------SK-A--- | |
| 442 21== ----------------------------------------------SK-A--- | |
| 443 22== ----------------------------------------------SK-A--- | |
| 444 23== ----------------------------------------------SK-A--- | |
| 445 24== ----------------------------------------------SK-D--- | |
| 446 25== -------------------------------------------EK-SN-A--- | |
| 447 26== -------------------------------------------PKIPE-A--- | |
| 448 27== YPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A--- | |
| 449 28== YPP-QGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A--- | |
| 450 29== -------------------------------------------DYCRKKGHDS | |
| 451 30== -------------------------------------------DHCGKKGHDT | |
| 452 31=p -------------------------------------------DHCGKKGHDT | |
| 453 32== ----------------------------------------------------- | |
| 454 33=p ----------------------------------------------------- | |
| 455 34== ----------------------------------------------------- | |
| 456 35=p ----------------------------------------------------- | |
| 457 36== -------------------------------------------------A-PQ | |
| 458 |