Mercurial > repos > rnateam > mafft
comparison test-data/mafft_auto_linsi.aln @ 15:bf28a8cff401 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author | bgruening |
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date | Wed, 20 Mar 2024 07:34:52 +0000 |
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comparison
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14:6f28e90db932 | 15:bf28a8cff401 |
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1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] | |
2 M------------------NGTE-G------DNFYVPF----SNKTGLARSPYEYPQY-- | |
3 --------------------------------------------------YLAEPW---- | |
4 ---------------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLA | |
5 MANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERY | |
6 IVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCG | |
7 PDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA------- | |
8 ------------------------------------------------------------ | |
9 ------------------------------------------------------------ | |
10 -------------------------------STQKAEKEVTRMVVLMVIGFLVCWVPYAS | |
11 VAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTL----- | |
12 CC-----GKNPLGDDE-SGA-STSK-TEVSSVS-TSPVSPA------------------- | |
13 ------------------------------------------------------------ | |
14 --------------- | |
15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] | |
16 M------------------NGTE-G------PNFYVPF----SNITGVVRSPFEQPQY-- | |
17 --------------------------------------------------YLAEPW---- | |
18 ---------------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA | |
19 VADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERY | |
20 VVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCG | |
21 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA------- | |
22 ------------------------------------------------------------ | |
23 ------------------------------------------------------------ | |
24 -------------------------------TTQKAEKEVTRMVIIMVIFFLICWLPYAS | |
25 VAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL----- | |
26 CC-----GKNPLGDDE-ASA-TASK-TETSQVA-PA------------------------ | |
27 ------------------------------------------------------------ | |
28 --------------- | |
29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 | |
30 M------------------NGTE-G------INFYVPM----SNKTGVVRSPFEYPQY-- | |
31 --------------------------------------------------YLAEPW---- | |
32 ---------------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLA | |
33 VADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERY | |
34 IVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCG | |
35 PDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA------- | |
36 ------------------------------------------------------------ | |
37 ------------------------------------------------------------ | |
38 -------------------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAV | |
39 VAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI----- | |
40 CC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA------------------- | |
41 ------------------------------------------------------------ | |
42 --------------- | |
43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish | |
44 M------------------NGTE-G------KNFYVPM----SNRTGLVRSPFEYPQY-- | |
45 --------------------------------------------------YLAEPW---- | |
46 ---------------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLA | |
47 VAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY | |
48 IVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCG | |
49 PDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA------- | |
50 ------------------------------------------------------------ | |
51 ------------------------------------------------------------ | |
52 -------------------------------STQKAEREVTKMVILMVFGFLIAWTPYAT | |
53 VAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI----- | |
54 FC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA------------------------ | |
55 ------------------------------------------------------------ | |
56 --------------- | |
57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish | |
58 M------------------NGTE-G------NNFYVPL----SNRTGLVRSPFEYPQY-- | |
59 --------------------------------------------------YLAEPW---- | |
60 ---------------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLA | |
61 VAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY | |
62 IVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCG | |
63 PDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA------- | |
64 ------------------------------------------------------------ | |
65 ------------------------------------------------------------ | |
66 -------------------------------STQKAEREVTKMVILMVLGFLVAWTPYAT | |
67 VAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL----- | |
68 FC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA------------------------ | |
69 ------------------------------------------------------------ | |
70 --------------- | |
71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- | |
72 M------------------KQVP-EFH----EDFYIPIPL--DINNLSAYSPFLVPQD-- | |
73 --------------------------------------------------HLGNQG---- | |
74 ---------------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLS | |
75 IANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERW | |
76 LVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCG | |
77 PDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA------- | |
78 ------------------------------------------------------------ | |
79 ------------------------------------------------------------ | |
80 -------------------------------STQKAEREVTKMVVVMVLGFLVCWAPYAS | |
81 FSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV----- | |
82 C------GKN-IEEDE-AST-SSQV-TQVSSVA-PEK----------------------- | |
83 ------------------------------------------------------------ | |
84 --------------- | |
85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86] | |
86 M------------------RKMS-E------EEFYL-------FKNISSVGPWDGPQY-- | |
87 --------------------------------------------------HIAPVW---- | |
88 ---------------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS | |
89 FGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERY | |
90 IVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCG | |
91 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA------- | |
92 ------------------------------------------------------------ | |
93 ------------------------------------------------------------ | |
94 -------------------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAA | |
95 FAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV----- | |
96 C------GKA-MTDES-DTC-SSQK-TEVSTVS-STQVGPN------------------- | |
97 ------------------------------------------------------------ | |
98 --------------- | |
99 > 8=opsin, greensensitive human (fragment) S07060 | |
100 ------------------------------------------------------------ | |
101 ------------------------------------------------------------ | |
102 ------------------------------------------------------------ | |
103 --DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW | |
104 LVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG | |
105 PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- | |
106 ------------------------------------------------------------ | |
107 ------------------------------------------------------------ | |
108 -------------------------------STQKAEKEVTRMVVVMVLAFC-------- | |
109 ------------------------------------------------------------ | |
110 ------------------------------------------------------------ | |
111 ------------------------------------------------------------ | |
112 --------------- | |
113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86] | |
114 MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- | |
115 --------------------------------------------------HIAPRW---- | |
116 ---------------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLA | |
117 VADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW | |
118 MVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG | |
119 PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- | |
120 ------------------------------------------------------------ | |
121 ------------------------------------------------------------ | |
122 -------------------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAF | |
123 FACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----- | |
124 -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- | |
125 ------------------------------------------------------------ | |
126 --------------- | |
127 > 10== Z68193 1 human Red Opsin <>[] | |
128 MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- | |
129 --------------------------------------------------HIAPRW---- | |
130 ---------------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLA | |
131 VADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW | |
132 LVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCG | |
133 PDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE------- | |
134 ------------------------------------------------------------ | |
135 ------------------------------------------------------------ | |
136 -------------------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTF | |
137 FACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----- | |
138 -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- | |
139 ------------------------------------------------------------ | |
140 --------------- | |
141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] | |
142 MTEAWNVAVFAARRSRDD-DDTTRG------SVFTY-------TNTNNTRGPFEGPNY-- | |
143 --------------------------------------------------HIAPRW---- | |
144 ---------------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLA | |
145 FVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERW | |
146 FVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCG | |
147 PDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE------- | |
148 ------------------------------------------------------------ | |
149 ------------------------------------------------------------ | |
150 -------------------------------STQKAEREVSRMVVVMIVAFCICWGPYAS | |
151 FVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----- | |
152 -------GKK-VDDGS-EAS-TTSR-TEVSSVS-NSSVAPA------------------- | |
153 ------------------------------------------------------------ | |
154 --------------- | |
155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] | |
156 MA-AWE-AAFAARRRHEE-EDTTRD------SVFTY-------TNSNNTRGPFEGPNY-- | |
157 --------------------------------------------------HIAPRW---- | |
158 ---------------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLA | |
159 VADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERW | |
160 FVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCG | |
161 PDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE------- | |
162 ------------------------------------------------------------ | |
163 ------------------------------------------------------------ | |
164 -------------------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTF | |
165 FACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----- | |
166 -------GKK-VDDGS-EVS-T-SR-TEVSSVS-NSSVSPA------------------- | |
167 ------------------------------------------------------------ | |
168 --------------- | |
169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] | |
170 -----------------------MS------SNSSQ-------APPNGTPGPFDGPQW-- | |
171 -------------------------------------------------PYQAPQS---- | |
172 ---------------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA | |
173 VADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERY | |
174 VVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCG | |
175 PNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD------- | |
176 ------------------------------------------------------------ | |
177 ------------------------------------------------------------ | |
178 -------------------------------TTQRAEREVTRMVIVMVMAFLLCWLPYST | |
179 FALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML----- | |
180 CCGYQ--PQR-TGKAS-PGT-PGPH-ADVTAAGLRNKVMPAHPV---------------- | |
181 ------------------------------------------------------------ | |
182 --------------- | |
183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] | |
184 M------------------ESGNVS------SSLF------------GNVSTALRPEA-- | |
185 -------------------------RLSA---E---TRLLGWNVPPEELRHIPEHWLTYP | |
186 ----------EPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLA | |
187 FCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRF | |
188 NVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCT | |
189 FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVES | |
190 ------------------------------------------------------------ | |
191 ------------------------------------------------------------ | |
192 -----------------LRS-------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGV | |
193 MSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL-- | |
194 AL-----NEK-APESS-AVA-STST-TQEPQQT--------------------------- | |
195 TAA--------------------------------------------------------- | |
196 --------------- | |
197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 | |
198 M------------------EYHNVS------SVL-------------GNVSSVLRPDA-- | |
199 -------------------------RLSA---E---SRLLGWNVPPDELRHIPEHWLIYP | |
200 ----------EPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLA | |
201 FCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY | |
202 NVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCT | |
203 FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDS | |
204 ------------------------------------------------------------ | |
205 ------------------------------------------------------------ | |
206 -----------------LRS-------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGV | |
207 MSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL-- | |
208 AI-----SEK-APESR-AAI-STST-TQEQQQT--------------------------- | |
209 TAA--------------------------------------------------------- | |
210 --------------- | |
211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] | |
212 M------------------EPLC------------------------NASEPPLRPEA-- | |
213 -------------------------R-SSGNGD---LQFLGWNVPPDQIQYIPEHWLTQL | |
214 ----------EPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLA | |
215 VFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY | |
216 NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS | |
217 FDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVES | |
218 ------------------------------------------------------------ | |
219 ------------------------------------------------------------ | |
220 -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV | |
221 MSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL-- | |
222 GV-----NEK-SGEIS-SAQ-STTT-QEQQQTT--------------------------- | |
223 AA---------------------------------------------------------- | |
224 --------------- | |
225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 | |
226 M------------------DALC------------------------NASEPPLRPEA-- | |
227 -------------------------RMSSGSDE---LQFLGWNVPPDQIQYIPEHWLTQL | |
228 ----------EPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLA | |
229 VFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY | |
230 NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS | |
231 FDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVES | |
232 ------------------------------------------------------------ | |
233 ------------------------------------------------------------ | |
234 -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV | |
235 MSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL-- | |
236 GV-----NEK-SGEAS-SAQ-STTT-QEQTQQT--------------------------- | |
237 SAA--------------------------------------------------------- | |
238 --------------- | |
239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 | |
240 M------------------TNAT-------------------------------GPQMAY | |
241 -------YG--------------AASMDFGYPE---GVSIVDFVRPEIKPYVHQHWYNYP | |
242 ----------PVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLA | |
243 LSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRY | |
244 NIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCS | |
245 YDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVST | |
246 ------------------------------------------------------------ | |
247 ------------------------------------------------------------ | |
248 -----------------LRS--------NEADAQRAEIRIAKTALVNVSLWFICWTPYAL | |
249 ISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWF-- | |
250 CV-----HET-ETKSN-DDS-QSNS-TVAQDKA--------------------------- | |
251 ------------------------------------------------------------ | |
252 --------------- | |
253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 | |
254 M------------------ANVT-------------------------------GPQMAF | |
255 -------YG--------------SGAATFGYPE---GMTVADFVPDRVKHMVLDHWYNYP | |
256 ----------PVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLA | |
257 LSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRY | |
258 NIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCS | |
259 YDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTN | |
260 ------------------------------------------------------------ | |
261 ------------------------------------------------------------ | |
262 -----------------LRS--------NEAETQRAEIRIAKTALVNVSLWFICWTPYAA | |
263 ITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWF-- | |
264 CV-----HEK-DPNDV-EEN-QSSN-TQTQEKS--------------------------- | |
265 ------------------------------------------------------------ | |
266 --------------- | |
267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] | |
268 M------------------ESFA-------------------------VAAAQLGPHF-- | |
269 ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP | |
270 ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA | |
271 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY | |
272 QVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCG | |
273 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS | |
274 ------------------------------------------------------------ | |
275 ------------------------------------------------------------ | |
276 -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV | |
277 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- | |
278 VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- | |
279 ------------------------------------------------------------ | |
280 --------------- | |
281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] | |
282 M------------------ESFA-------------------------VAAAQLGPHF-- | |
283 ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP | |
284 ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA | |
285 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY | |
286 QVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCG | |
287 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS | |
288 ------------------------------------------------------------ | |
289 ------------------------------------------------------------ | |
290 -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV | |
291 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- | |
292 VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- | |
293 ------------------------------------------------------------ | |
294 --------------- | |
295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' | |
296 M------------------DSFA-------------------------AVATQLGPQF-- | |
297 ------------------------AAPS--------NGSVVDKVTPDMAHLISPYWDQFP | |
298 ----------AMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA | |
299 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY | |
300 QVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCG | |
301 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS | |
302 ------------------------------------------------------------ | |
303 ------------------------------------------------------------ | |
304 -----------------LRS--------SEDADKSAEGKLAKVALVTISLWFMAWTPYLV | |
305 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- | |
306 VF-----GKV-DDGKS-SEA-QSQA-TTSEAES------KA------------------- | |
307 ------------------------------------------------------------ | |
308 --------------- | |
309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] | |
310 M------------------ERSH--------------------LPETPFDLAHSGPRF-- | |
311 ------------------------QAQSSG------NGSVLDNVLPDMAHLVNPYWSRFA | |
312 ----------PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA | |
313 FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY | |
314 NVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACS | |
315 IDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKS | |
316 ------------------------------------------------------------ | |
317 ------------------------------------------------------------ | |
318 -----------------LRS--------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLV | |
319 ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMC-- | |
320 VF-----GNT-DEPKP-DAP-ASDTETTSEADS------KA------------------- | |
321 ------------------------------------------------------------ | |
322 --------------- | |
323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 | |
324 M------------------ERSL--------------------LPEPPLAMALLGPRF-- | |
325 ------------------------EAQTGG------NRSVLDNVLPDMAPLVNPHWSRFA | |
326 ----------PMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA | |
327 FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRY | |
328 NVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACS | |
329 IDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKS | |
330 ------------------------------------------------------------ | |
331 ------------------------------------------------------------ | |
332 -----------------LRS--------SEDCDKSAENKLAKVALTTISLWFMAWTPYLI | |
333 ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMC-- | |
334 VC-----GTT-DEPKP-DAP-PSDTETTSEAES------KD------------------- | |
335 ------------------------------------------------------------ | |
336 --------------- | |
337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] | |
338 M-------------------------------------------------IAVSGPSY-- | |
339 ------------------------EAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYP | |
340 ----------PLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLA | |
341 ISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY | |
342 NVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACG | |
343 TDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVAS | |
344 ------------------------------------------------------------ | |
345 ------------------------------------------------------------ | |
346 -----------------LRS--------SENQNTSAECKLAKVALMTISLWFMAWTPYLV | |
347 INFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSL-- | |
348 AC-----AA--EPSSD-AVS-TTSG-TTTVTDN------EK------------------S | |
349 NA---------------------------------------------------------- | |
350 --------------- | |
351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] | |
352 M------------------ANQL---------------------------------SY-- | |
353 ------------------------SSLGWPYQP---NASVVDTMPKEMLYMIHEHWYAFP | |
354 ----------PMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLA | |
355 FSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRY | |
356 NVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCT | |
357 VDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVAS | |
358 ------------------------------------------------------------ | |
359 ------------------------------------------------------------ | |
360 -----------------LRA-------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLI | |
361 ISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSL-- | |
362 AC-----GSG-ESGSD-VKS-EASA-TTTMEEK------PKIPEA--------------- | |
363 ------------------------------------------------------------ | |
364 --------------- | |
365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] | |
366 M------------------VEST----------------------TLVNQTWWYNPTV-- | |
367 --------------------------------------------------DIHPHWAKFD | |
368 ----------PIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLA | |
369 MSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRY | |
370 NVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCS | |
371 FDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKE | |
372 ------------------------------------------------------------ | |
373 ------------------------------------------------------------ | |
374 -----------------LRK---------AQAGASAEMKLAKISMVIITQFMLSWSPYAI | |
375 IALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLT | |
376 CCQFD------EKECE-DAN-DAEE-EVVASER----GGESRDAAQMKEMMAMMQKMQAQ | |
377 QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP | |
378 QGAPPQGVDNQAYQA | |
379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] | |
380 M------------------GRDL-----------------------RDNETWWYNPSI-- | |
381 --------------------------------------------------VVHPHWREFD | |
382 ----------QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLA | |
383 FSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRY | |
384 NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCS | |
385 FDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE | |
386 ------------------------------------------------------------ | |
387 ------------------------------------------------------------ | |
388 -----------------LRK---------AQAGANAEMRLAKISIVIVSQFLLSWSPYAV | |
389 VALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT | |
390 CCQFD------DKETE-DDK-DAET-EIPAGES--SDAAPSADAAQMKEMMAMMQKMQQQ | |
391 QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP----- | |
392 -AAPPQGVDNQAYQA | |
393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra | |
394 MM-----------------DVNSSGR-----PDLYGHLRS-FLLPEVGRGLPDLSPDG-- | |
395 ----------GADPVAGSWAP---HLLS------------------EVTASPAPTWDAPP | |
396 DNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLA | |
397 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY | |
398 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS | |
399 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- | |
400 -------FPRVEPDSVIALNG--------------------------------------- | |
401 -----------------------IVKLQKE-------------------VEECAN----- | |
402 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL | |
403 LSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- | |
404 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERPEFVL------------Q | |
405 NADY-------------------------------------------------------- | |
406 -------CRKKGHDS | |
407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] | |
408 M----------------------------------------------------------- | |
409 --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP | |
410 DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA | |
411 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY | |
412 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS | |
413 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- | |
414 -------FPRVQPESVISLNG--------------------------------------- | |
415 -----------------------VVKLQKE-------------------VEECAN----- | |
416 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL | |
417 LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL----- | |
418 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q | |
419 NSDH-------------------------------------------------------- | |
420 -------CGKKGHDT | |
421 > 31=p A47425 serotonin receptor 5HT-7 - rat | |
422 M----------------------------------------------------------- | |
423 --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP | |
424 DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA | |
425 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY | |
426 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS | |
427 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- | |
428 -------FPRVQPESVISLNG--------------------------------------- | |
429 -----------------------VVKLQKE-------------------VEECAN----- | |
430 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL | |
431 LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- | |
432 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q | |
433 NSDH-------------------------------------------------------- | |
434 -------CGKKGHDT | |
435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] | |
436 M------------------DVLSPG-------------------------------QG-- | |
437 ------------------------NNTTSPPAPF-E---------------TGGNTTGIS | |
438 ----------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA | |
439 VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY | |
440 WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS | |
441 KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADT | |
442 RHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC----------------- | |
443 -------------------------------ANGAVRQGDDGAALEVIEVHRVGNSKEHL | |
444 PLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI | |
445 VALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- | |
446 KCKFCRQ----------------------------------------------------- | |
447 ------------------------------------------------------------ | |
448 --------------- | |
449 > 33=p A35181 serotonin receptor class 1A - rat | |
450 M------------------DVFSFG-------------------------------QG-- | |
451 ------------------------NNTTASQEPF-G---------------TGGNVTSIS | |
452 ----------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA | |
453 VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY | |
454 WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS | |
455 KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGT | |
456 SLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC----------------- | |
457 -------------------------------TNGAVRQGDDEATLEVIEVHRVGNSKEHL | |
458 PLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI | |
459 VALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- | |
460 KCKFCRR----------------------------------------------------- | |
461 ------------------------------------------------------------ | |
462 --------------- | |
463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] | |
464 M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV | |
465 TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT | |
466 ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA | |
467 VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY | |
468 WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS | |
469 QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT | |
470 EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN | |
471 ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- | |
472 -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI | |
473 IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- | |
474 FGKYRRGHR--------------------------------------------------- | |
475 ------------------------------------------------------------ | |
476 --------------- | |
477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail | |
478 M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV | |
479 TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT | |
480 ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA | |
481 VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY | |
482 WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS | |
483 QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT | |
484 EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN | |
485 ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- | |
486 -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI | |
487 IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- | |
488 FGKYRRGHR--------------------------------------------------- | |
489 ------------------------------------------------------------ | |
490 --------------- | |
491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi | |
492 M------------------EGAE-GQEELDWEALYLRLPL-------------------- | |
493 ------------------------QNCSWNSTGWEPNW--------NVTVVPNTTWWQAS | |
494 -----APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLA | |
495 VADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRY | |
496 WAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVS | |
497 QDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGP | |
498 -------PP-----------------------------------------------VPAG | |
499 GALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANGLEAD | |
500 PPTTGYGAVAAAYYPSLVRRK------PKEAADSKRERKAAKTLAIITGAFVACWLPFFV | |
501 LAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL----- | |
502 CGRRVRRRRA-----------------------------PQ------------------- | |
503 ------------------------------------------------------------ | |
504 --------------- |