comparison test-data/mafft_auto_linsi.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
children
comparison
equal deleted inserted replaced
14:6f28e90db932 15:bf28a8cff401
1 > 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
2 M------------------NGTE-G------DNFYVPF----SNKTGLARSPYEYPQY--
3 --------------------------------------------------YLAEPW----
4 ---------------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLA
5 MANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERY
6 IVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCG
7 PDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA-------
8 ------------------------------------------------------------
9 ------------------------------------------------------------
10 -------------------------------STQKAEKEVTRMVVLMVIGFLVCWVPYAS
11 VAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----
12 CC-----GKNPLGDDE-SGA-STSK-TEVSSVS-TSPVSPA-------------------
13 ------------------------------------------------------------
14 ---------------
15 > 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
16 M------------------NGTE-G------PNFYVPF----SNITGVVRSPFEQPQY--
17 --------------------------------------------------YLAEPW----
18 ---------------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
19 VADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERY
20 VVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCG
21 IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA-------
22 ------------------------------------------------------------
23 ------------------------------------------------------------
24 -------------------------------TTQKAEKEVTRMVIIMVIFFLICWLPYAS
25 VAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----
26 CC-----GKNPLGDDE-ASA-TASK-TETSQVA-PA------------------------
27 ------------------------------------------------------------
28 ---------------
29 > 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
30 M------------------NGTE-G------INFYVPM----SNKTGVVRSPFEYPQY--
31 --------------------------------------------------YLAEPW----
32 ---------------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLA
33 VADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERY
34 IVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCG
35 PDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA-------
36 ------------------------------------------------------------
37 ------------------------------------------------------------
38 -------------------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAV
39 VAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----
40 CC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA-------------------
41 ------------------------------------------------------------
42 ---------------
43 > 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
44 M------------------NGTE-G------KNFYVPM----SNRTGLVRSPFEYPQY--
45 --------------------------------------------------YLAEPW----
46 ---------------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLA
47 VAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY
48 IVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCG
49 PDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA-------
50 ------------------------------------------------------------
51 ------------------------------------------------------------
52 -------------------------------STQKAEREVTKMVILMVFGFLIAWTPYAT
53 VAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----
54 FC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA------------------------
55 ------------------------------------------------------------
56 ---------------
57 > 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
58 M------------------NGTE-G------NNFYVPL----SNRTGLVRSPFEYPQY--
59 --------------------------------------------------YLAEPW----
60 ---------------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLA
61 VAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY
62 IVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCG
63 PDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA-------
64 ------------------------------------------------------------
65 ------------------------------------------------------------
66 -------------------------------STQKAEREVTKMVILMVLGFLVAWTPYAT
67 VAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----
68 FC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA------------------------
69 ------------------------------------------------------------
70 ---------------
71 > 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
72 M------------------KQVP-EFH----EDFYIPIPL--DINNLSAYSPFLVPQD--
73 --------------------------------------------------HLGNQG----
74 ---------------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLS
75 IANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERW
76 LVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCG
77 PDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA-------
78 ------------------------------------------------------------
79 ------------------------------------------------------------
80 -------------------------------STQKAEREVTKMVVVMVLGFLVCWAPYAS
81 FSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-----
82 C------GKN-IEEDE-AST-SSQV-TQVSSVA-PEK-----------------------
83 ------------------------------------------------------------
84 ---------------
85 > 7== M13299 1 human BCP <>[Science232(4747),193-202'86]
86 M------------------RKMS-E------EEFYL-------FKNISSVGPWDGPQY--
87 --------------------------------------------------HIAPVW----
88 ---------------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS
89 FGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERY
90 IVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCG
91 PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA-------
92 ------------------------------------------------------------
93 ------------------------------------------------------------
94 -------------------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAA
95 FAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-----
96 C------GKA-MTDES-DTC-SSQK-TEVSTVS-STQVGPN-------------------
97 ------------------------------------------------------------
98 ---------------
99 > 8=opsin, greensensitive human (fragment) S07060
100 ------------------------------------------------------------
101 ------------------------------------------------------------
102 ------------------------------------------------------------
103 --DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
104 LVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG
105 PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE-------
106 ------------------------------------------------------------
107 ------------------------------------------------------------
108 -------------------------------STQKAEKEVTRMVVVMVLAFC--------
109 ------------------------------------------------------------
110 ------------------------------------------------------------
111 ------------------------------------------------------------
112 ---------------
113 > 9== K03494 1 human GCP <>[Science232(4747),193-202'86]
114 MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY--
115 --------------------------------------------------HIAPRW----
116 ---------------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLA
117 VADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
118 MVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG
119 PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE-------
120 ------------------------------------------------------------
121 ------------------------------------------------------------
122 -------------------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAF
123 FACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-----
124 -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA-------------------
125 ------------------------------------------------------------
126 ---------------
127 > 10== Z68193 1 human Red Opsin <>[]
128 MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY--
129 --------------------------------------------------HIAPRW----
130 ---------------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLA
131 VADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
132 LVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCG
133 PDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE-------
134 ------------------------------------------------------------
135 ------------------------------------------------------------
136 -------------------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTF
137 FACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-----
138 -------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA-------------------
139 ------------------------------------------------------------
140 ---------------
141 > 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
142 MTEAWNVAVFAARRSRDD-DDTTRG------SVFTY-------TNTNNTRGPFEGPNY--
143 --------------------------------------------------HIAPRW----
144 ---------------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLA
145 FVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERW
146 FVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCG
147 PDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE-------
148 ------------------------------------------------------------
149 ------------------------------------------------------------
150 -------------------------------STQKAEREVSRMVVVMIVAFCICWGPYAS
151 FVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-----
152 -------GKK-VDDGS-EAS-TTSR-TEVSSVS-NSSVAPA-------------------
153 ------------------------------------------------------------
154 ---------------
155 > 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90]
156 MA-AWE-AAFAARRRHEE-EDTTRD------SVFTY-------TNSNNTRGPFEGPNY--
157 --------------------------------------------------HIAPRW----
158 ---------------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLA
159 VADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERW
160 FVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCG
161 PDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE-------
162 ------------------------------------------------------------
163 ------------------------------------------------------------
164 -------------------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTF
165 FACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-----
166 -------GKK-VDDGS-EVS-T-SR-TEVSSVS-NSSVSPA-------------------
167 ------------------------------------------------------------
168 ---------------
169 > 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95]
170 -----------------------MS------SNSSQ-------APPNGTPGPFDGPQW--
171 -------------------------------------------------PYQAPQS----
172 ---------------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA
173 VADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERY
174 VVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCG
175 PNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD-------
176 ------------------------------------------------------------
177 ------------------------------------------------------------
178 -------------------------------TTQRAEREVTRMVIVMVMAFLLCWLPYST
179 FALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----
180 CCGYQ--PQR-TGKAS-PGT-PGPH-ADVTAAGLRNKVMPAHPV----------------
181 ------------------------------------------------------------
182 ---------------
183 > 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
184 M------------------ESGNVS------SSLF------------GNVSTALRPEA--
185 -------------------------RLSA---E---TRLLGWNVPPEELRHIPEHWLTYP
186 ----------EPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLA
187 FCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRF
188 NVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCT
189 FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVES
190 ------------------------------------------------------------
191 ------------------------------------------------------------
192 -----------------LRS-------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGV
193 MSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL--
194 AL-----NEK-APESS-AVA-STST-TQEPQQT---------------------------
195 TAA---------------------------------------------------------
196 ---------------
197 > 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
198 M------------------EYHNVS------SVL-------------GNVSSVLRPDA--
199 -------------------------RLSA---E---SRLLGWNVPPDELRHIPEHWLIYP
200 ----------EPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLA
201 FCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY
202 NVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCT
203 FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDS
204 ------------------------------------------------------------
205 ------------------------------------------------------------
206 -----------------LRS-------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGV
207 MSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL--
208 AI-----SEK-APESR-AAI-STST-TQEQQQT---------------------------
209 TAA---------------------------------------------------------
210 ---------------
211 > 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
212 M------------------EPLC------------------------NASEPPLRPEA--
213 -------------------------R-SSGNGD---LQFLGWNVPPDQIQYIPEHWLTQL
214 ----------EPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLA
215 VFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY
216 NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS
217 FDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVES
218 ------------------------------------------------------------
219 ------------------------------------------------------------
220 -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV
221 MSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL--
222 GV-----NEK-SGEIS-SAQ-STTT-QEQQQTT---------------------------
223 AA----------------------------------------------------------
224 ---------------
225 > 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
226 M------------------DALC------------------------NASEPPLRPEA--
227 -------------------------RMSSGSDE---LQFLGWNVPPDQIQYIPEHWLTQL
228 ----------EPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLA
229 VFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY
230 NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS
231 FDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVES
232 ------------------------------------------------------------
233 ------------------------------------------------------------
234 -----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV
235 MSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL--
236 GV-----NEK-SGEAS-SAQ-STTT-QEQTQQT---------------------------
237 SAA---------------------------------------------------------
238 ---------------
239 > 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
240 M------------------TNAT-------------------------------GPQMAY
241 -------YG--------------AASMDFGYPE---GVSIVDFVRPEIKPYVHQHWYNYP
242 ----------PVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLA
243 LSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRY
244 NIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCS
245 YDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVST
246 ------------------------------------------------------------
247 ------------------------------------------------------------
248 -----------------LRS--------NEADAQRAEIRIAKTALVNVSLWFICWTPYAL
249 ISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWF--
250 CV-----HET-ETKSN-DDS-QSNS-TVAQDKA---------------------------
251 ------------------------------------------------------------
252 ---------------
253 > 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
254 M------------------ANVT-------------------------------GPQMAF
255 -------YG--------------SGAATFGYPE---GMTVADFVPDRVKHMVLDHWYNYP
256 ----------PVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLA
257 LSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRY
258 NIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCS
259 YDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTN
260 ------------------------------------------------------------
261 ------------------------------------------------------------
262 -----------------LRS--------NEAETQRAEIRIAKTALVNVSLWFICWTPYAA
263 ITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWF--
264 CV-----HEK-DPNDV-EEN-QSSN-TQTQEKS---------------------------
265 ------------------------------------------------------------
266 ---------------
267 > 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85]
268 M------------------ESFA-------------------------VAAAQLGPHF--
269 ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP
270 ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
271 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
272 QVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCG
273 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
274 ------------------------------------------------------------
275 ------------------------------------------------------------
276 -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV
277 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
278 VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA-------------------
279 ------------------------------------------------------------
280 ---------------
281 > 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85]
282 M------------------ESFA-------------------------VAAAQLGPHF--
283 ------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP
284 ----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
285 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
286 QVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCG
287 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
288 ------------------------------------------------------------
289 ------------------------------------------------------------
290 -----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV
291 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
292 VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA-------------------
293 ------------------------------------------------------------
294 ---------------
295 > 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
296 M------------------DSFA-------------------------AVATQLGPQF--
297 ------------------------AAPS--------NGSVVDKVTPDMAHLISPYWDQFP
298 ----------AMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
299 ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
300 QVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCG
301 IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
302 ------------------------------------------------------------
303 ------------------------------------------------------------
304 -----------------LRS--------SEDADKSAEGKLAKVALVTISLWFMAWTPYLV
305 INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
306 VF-----GKV-DDGKS-SEA-QSQA-TTSEAES------KA-------------------
307 ------------------------------------------------------------
308 ---------------
309 > 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86]
310 M------------------ERSH--------------------LPETPFDLAHSGPRF--
311 ------------------------QAQSSG------NGSVLDNVLPDMAHLVNPYWSRFA
312 ----------PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
313 FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY
314 NVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACS
315 IDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKS
316 ------------------------------------------------------------
317 ------------------------------------------------------------
318 -----------------LRS--------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLV
319 ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMC--
320 VF-----GNT-DEPKP-DAP-ASDTETTSEADS------KA-------------------
321 ------------------------------------------------------------
322 ---------------
323 > 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
324 M------------------ERSL--------------------LPEPPLAMALLGPRF--
325 ------------------------EAQTGG------NRSVLDNVLPDMAPLVNPHWSRFA
326 ----------PMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
327 FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRY
328 NVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACS
329 IDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKS
330 ------------------------------------------------------------
331 ------------------------------------------------------------
332 -----------------LRS--------SEDCDKSAENKLAKVALTTISLWFMAWTPYLI
333 ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMC--
334 VC-----GTT-DEPKP-DAP-PSDTETTSEAES------KD-------------------
335 ------------------------------------------------------------
336 ---------------
337 > 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[]
338 M-------------------------------------------------IAVSGPSY--
339 ------------------------EAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYP
340 ----------PLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLA
341 ISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY
342 NVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACG
343 TDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVAS
344 ------------------------------------------------------------
345 ------------------------------------------------------------
346 -----------------LRS--------SENQNTSAECKLAKVALMTISLWFMAWTPYLV
347 INFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSL--
348 AC-----AA--EPSSD-AVS-TTSG-TTTVTDN------EK------------------S
349 NA----------------------------------------------------------
350 ---------------
351 > 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
352 M------------------ANQL---------------------------------SY--
353 ------------------------SSLGWPYQP---NASVVDTMPKEMLYMIHEHWYAFP
354 ----------PMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLA
355 FSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRY
356 NVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCT
357 VDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVAS
358 ------------------------------------------------------------
359 ------------------------------------------------------------
360 -----------------LRA-------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLI
361 ISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSL--
362 AC-----GSG-ESGSD-VKS-EASA-TTTMEEK------PKIPEA---------------
363 ------------------------------------------------------------
364 ---------------
365 > 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
366 M------------------VEST----------------------TLVNQTWWYNPTV--
367 --------------------------------------------------DIHPHWAKFD
368 ----------PIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLA
369 MSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRY
370 NVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCS
371 FDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKE
372 ------------------------------------------------------------
373 ------------------------------------------------------------
374 -----------------LRK---------AQAGASAEMKLAKISMVIITQFMLSWSPYAI
375 IALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLT
376 CCQFD------EKECE-DAN-DAEE-EVVASER----GGESRDAAQMKEMMAMMQKMQAQ
377 QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP
378 QGAPPQGVDNQAYQA
379 > 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
380 M------------------GRDL-----------------------RDNETWWYNPSI--
381 --------------------------------------------------VVHPHWREFD
382 ----------QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLA
383 FSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRY
384 NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCS
385 FDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE
386 ------------------------------------------------------------
387 ------------------------------------------------------------
388 -----------------LRK---------AQAGANAEMRLAKISIVIVSQFLLSWSPYAV
389 VALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT
390 CCQFD------DKETE-DDK-DAET-EIPAGES--SDAAPSADAAQMKEMMAMMQKMQQQ
391 QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP-----
392 -AAPPQGVDNQAYQA
393 > 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
394 MM-----------------DVNSSGR-----PDLYGHLRS-FLLPEVGRGLPDLSPDG--
395 ----------GADPVAGSWAP---HLLS------------------EVTASPAPTWDAPP
396 DNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLA
397 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
398 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
399 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
400 -------FPRVEPDSVIALNG---------------------------------------
401 -----------------------IVKLQKE-------------------VEECAN-----
402 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
403 LSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----
404 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERPEFVL------------Q
405 NADY--------------------------------------------------------
406 -------CRKKGHDS
407 > 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
408 M-----------------------------------------------------------
409 --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP
410 DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA
411 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
412 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
413 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
414 -------FPRVQPESVISLNG---------------------------------------
415 -----------------------VVKLQKE-------------------VEECAN-----
416 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
417 LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----
418 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q
419 NSDH--------------------------------------------------------
420 -------CGKKGHDT
421 > 31=p A47425 serotonin receptor 5HT-7 - rat
422 M-----------------------------------------------------------
423 --------------------P---HLLS--------GFL-------EVTASPAPTWDAPP
424 DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA
425 LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
426 LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
427 QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
428 -------FPRVQPESVISLNG---------------------------------------
429 -----------------------VVKLQKE-------------------VEECAN-----
430 -------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
431 LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----
432 QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q
433 NSDH--------------------------------------------------------
434 -------CGKKGHDT
435 > 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92]
436 M------------------DVLSPG-------------------------------QG--
437 ------------------------NNTTSPPAPF-E---------------TGGNTTGIS
438 ----------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA
439 VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY
440 WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS
441 KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADT
442 RHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC-----------------
443 -------------------------------ANGAVRQGDDGAALEVIEVHRVGNSKEHL
444 PLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI
445 VALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----
446 KCKFCRQ-----------------------------------------------------
447 ------------------------------------------------------------
448 ---------------
449 > 33=p A35181 serotonin receptor class 1A - rat
450 M------------------DVFSFG-------------------------------QG--
451 ------------------------NNTTASQEPF-G---------------TGGNVTSIS
452 ----------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA
453 VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY
454 WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS
455 KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGT
456 SLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC-----------------
457 -------------------------------TNGAVRQGDDEATLEVIEVHRVGNSKEHL
458 PLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI
459 VALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----
460 KCKFCRR-----------------------------------------------------
461 ------------------------------------------------------------
462 ---------------
463 > 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
464 M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV
465 TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT
466 ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA
467 VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY
468 WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS
469 QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT
470 EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN
471 ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK--
472 -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI
473 IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----
474 FGKYRRGHR---------------------------------------------------
475 ------------------------------------------------------------
476 ---------------
477 > 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
478 M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV
479 TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT
480 ----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA
481 VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY
482 WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS
483 QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT
484 EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN
485 ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK--
486 -----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI
487 IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----
488 FGKYRRGHR---------------------------------------------------
489 ------------------------------------------------------------
490 ---------------
491 > 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
492 M------------------EGAE-GQEELDWEALYLRLPL--------------------
493 ------------------------QNCSWNSTGWEPNW--------NVTVVPNTTWWQAS
494 -----APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLA
495 VADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRY
496 WAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVS
497 QDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGP
498 -------PP-----------------------------------------------VPAG
499 GALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANGLEAD
500 PPTTGYGAVAAAYYPSLVRRK------PKEAADSKRERKAAKTLAIITGAFVACWLPFFV
501 LAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL-----
502 CGRRVRRRRA-----------------------------PQ-------------------
503 ------------------------------------------------------------
504 ---------------