comparison test-data/mafft_custom_original.clustal.aln @ 15:bf28a8cff401 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
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comparison
equal deleted inserted replaced
14:6f28e90db932 15:bf28a8cff401
1 CLUSTAL format alignment by MAFFT G-INS-i (v7.520)
2
3
4 1== MN----------------------------------------------------------
5 2== MN----------------------------------------------------------
6 3== MN----------------------------------------------------------
7 4=p MN----------------------------------------------------------
8 5=p MN----------------------------------------------------------
9 6== MK----------------------------------------------------------
10 7== MR----------------------------------------------------------
11 8=opsin, ------------------------------------------------------------
12 9== MA------QQWS-LQRLAGRHPQDS--------------------------YED------
13 10== MA------QQWS-LQRLAGRHPQDS--------------------------YED------
14 11== MT------EAWNVAVFAARRSRDD----------------------------DD------
15 12== MA-------AWE-AAFAARRRHEE----------------------------ED------
16 13== MS----------------------------------------------------------
17 14== MESGNVS-----------------------------------------------------
18 15== MEYHNVS-----------------------------------------------------
19 16== ME----------------------------------------------------------
20 17== MD----------------------------------------------------------
21 18== MT----------------------------------------------------------
22 19== MA----------------------------------------------------------
23 20== MESF--------------------------------------------------------
24 21== MESF--------------------------------------------------------
25 22== MDSF--------------------------------------------------------
26 23== MERSHLP---------------------------------------------------ET
27 24== MERSLLP---------------------------------------------------EP
28 25== MI----------------------------------------------------------
29 26== M-----------------------------------------------------------
30 27== MV----------------------------------------------------------
31 28== MG----------------------------------------------------------
32 29== MMDVN-----------SSGRPDLYGHLRSFLLPEVGRGLPDLSPDG------------GA
33 30== M-----------------------------------------------------------
34 31=p M-----------------------------------------------------------
35 32== MDVLS-------------------------------------------------------
36 33=p MDVFS-------------------------------------------------------
37 34== MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
38 35=p MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
39 36== ME----------------------------------------------------------
40
41
42 1== ----GTEG--DNFY------------VPFSNKTG----------------------LARS
43 2== ----GTEG--PNFY------------VPFSNITG----------------------VVRS
44 3== ----GTEG--INFY------------VPMSNKTG----------------------VVRS
45 4=p ----GTEG--KNFY------------VPMSNRTG----------------------LVRS
46 5=p ----GTEG--NNFY------------VPLSNRTG----------------------LVRS
47 6== ----QVPEFHEDFY------IPIP--LDINNLSA------------------------YS
48 7== ----KMSE--EEFY------------L-FKNISS----------------------V--G
49 8=opsin, ------------------------------------------------------------
50 9== ----STQS--SIFT------------YTNSNSTR-------------------------G
51 10== ----STQS--SIFT------------YTNSNSTR-------------------------G
52 11== ----TTRG--SVFT------------YTNTNNTR-------------------------G
53 12== ----TTRD--SVFT------------YTNSNNTR-------------------------G
54 13== ----SNSS------------------QAPPNGTP-------------------------G
55 14== SSLFGNVS--TALR-------------PEARLSA---E------TRLLGWNVPPEELRHI
56 15== SVL-GNVS--SVLR-------------PDARLSA---E------SRLLGWNVPPDELRHI
57 16== -PLCNASE--PPLR-------------PEAR-SSGNGD------LQFLGWNVPPDQIQYI
58 17== -ALCNASE--PPLR-------------PEARMSSGSDE------LQFLGWNVPPDQIQYI
59 18== ----NATG--PQMAY-----------YGAASMDFGYPE------GVSIVDFVRPEIKPYV
60 19== ----NVTG--PQMAF-----------YGSGAATFGYPE------GMTVADFVPDRVKHMV
61 20== AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
62 21== AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
63 22== AAVATQLG--PQFA----------------APS-----------NGSVVDKVTPDMAHLI
64 23== PFDLAHSG--PRFQ----------------AQSSG---------NGSVLDNVLPDMAHLV
65 24== PLAMALLG--PRFE----------------AQTGG---------NRSVLDNVLPDMAPLV
66 25== ----AVSG--PSYE----------------AFSYGGQARFN---NQTVVDKVPPDMLHLI
67 26== -----ANQ--LSYS----------------SLGWPYQP------NASVVDTMPKEMLYMI
68 27== ----ESTT--------------------LVNQTWWY--------NPTVD----------I
69 28== ----RDLR---------------------DNETWWY--------NPSIV----------V
70 29== DPVAGSWA--PHLL------------S---EVTASPAPTWDAPPDNASG-----------
71 30== ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
72 31=p ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
73 32== --------------------------PGQGNNTTSPPAPFETGGNTTGI-----------
74 33=p --------------------------FGQGNNTTASQEPFGTGGNVTSI-----------
75 34== QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
76 35=p QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
77 36== ----GAEG--QEELDWEALYLRLPLQNCSWNSTGWEPN-----WNVTVV----------P
78
79
80 1== PYEYPQY------YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYIL
81 2== PFEQPQY------YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYIL
82 3== PFEYPQY------YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYIL
83 4=p PFEYPQY------YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFIL
84 5=p PFEYPQY------YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFIL
85 6== PFLVPQD------HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYIL
86 7== PWDGPQY------HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL
87 8=opsin, ------------------------------------------------------------
88 9== PFEGPNY------HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWIL
89 10== PFEGPNY------HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWIL
90 11== PFEGPNY------HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWIL
91 12== PFEGPNY------HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWIL
92 13== PFDGPQWP-----YQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYIL
93 14== PEHWLTY------PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV
94 15== PEHWLIY------PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILV
95 16== PEHWLTQ------LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFV
96 17== PEHWLTQ------LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFV
97 18== HQHWYNY------PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILV
98 19== LDHWYNY------PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLI
99 20== SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
100 21== SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
101 22== SPYWDQF------PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLV
102 23== NPYWSRF------APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLV
103 24== NPHWSRF------APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLV
104 25== DANWYQY------PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFV
105 26== HEHWYAF------PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLV
106 27== HPHWAKF------DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFI
107 28== HPHWREF------DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFI
108 29== ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLI
109 30== ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
110 31=p ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
111 32== -------------SDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
112 33=p -------------SDVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
113 34== DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
114 35=p DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
115 36== NTTWWQASAPFD-TPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLI
116
117
118 1== LNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLA
119 2== LNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLA
120 3== VNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLA
121 4=p VNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLA
122 5=p VNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLA
123 6== VNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVA
124 7== VNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLA
125 8=opsin, ------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
126 9== VNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
127 10== VNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
128 11== VNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIIS
129 12== VNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIIS
130 13== VNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILA
131 14== INLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIA
132 15== INLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIA
133 16== LNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIG
134 17== LNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIG
135 18== VNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMIS
136 19== VNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMIS
137 20== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
138 21== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
139 22== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
140 23== LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIA
141 24== LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIA
142 25== INLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIA
143 26== VNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMIT
144 27== INLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMIS
145 28== INLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMIS
146 29== VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
147 30== VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
148 31=p VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
149 32== GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
150 33=p GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
151 34== LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
152 35=p LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
153 36== LSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIA
154 . : : * : :
155
156 1== IERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQ
157 2== IERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQ
158 3== IERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQ
159 4=p IERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQ
160 5=p IERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQ
161 6== FERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQ
162 7== FERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQ
163 8=opsin, WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
164 9== WERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
165 10== WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLK
166 11== WERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLK
167 12== WERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLK
168 13== LERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLR
169 14== YDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYL
170 15== YDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYL
171 16== YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
172 17== YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
173 18== FDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGIL
174 19== FDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGIL
175 20== LDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNL
176 21== LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNL
177 22== LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNL
178 23== FDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNL
179 24== FDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNL
180 25== FDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNM
181 26== LDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNL
182 27== IDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGIL
183 28== IDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVL
184 29== IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
185 30== IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
186 31=p IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
187 32== LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
188 33=p LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
189 34== MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
190 35=p MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
191 36== LDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLR
192 :*: : : .
193
194 1== CSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA---
195 2== CSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA---
196 3== CSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA---
197 4=p CSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA---
198 5=p CSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA---
199 6== CSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA---
200 7== CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA---
201 8=opsin, TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
202 9== TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
203 10== TSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE---
204 11== TSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE---
205 12== TSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE---
206 13== TSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD---
207 14== TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
208 15== TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
209 16== TSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKM
210 17== TSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKM
211 18== DSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKM
212 19== DSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKM
213 20== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
214 21== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
215 22== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
216 23== TACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKM
217 24== TACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKM
218 25== TACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM
219 26== TSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKM
220 27== TSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRL
221 28== CNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL
222 29== CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
223 30== CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
224 31=p CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
225 32== CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKT
226 33=p CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKK
227 34== CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
228 35=p CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
229 36== CVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARG
230 : * : * :
231
232 1== ------------------------------------------------------------
233 2== ------------------------------------------------------------
234 3== ------------------------------------------------------------
235 4=p ------------------------------------------------------------
236 5=p ------------------------------------------------------------
237 6== ------------------------------------------------------------
238 7== ------------------------------------------------------------
239 8=opsin, ------------------------------------------------------------
240 9== ------------------------------------------------------------
241 10== ------------------------------------------------------------
242 11== ------------------------------------------------------------
243 12== ------------------------------------------------------------
244 13== ------------------------------------------------------------
245 14== NVE------------------SLRS-----------------------------------
246 15== NVD------------------SLRS-----------------------------------
247 16== NVE------------------SLRS-----------------------------------
248 17== NVE------------------SLRS-----------------------------------
249 18== NVS------------------TLRS-----------------------------------
250 19== NVT------------------NLRS-----------------------------------
251 20== NVK------------------SLRS-----------------------------------
252 21== NVK------------------SLRS-----------------------------------
253 22== NVK------------------SLRS-----------------------------------
254 23== NVK------------------SLRS-----------------------------------
255 24== NVK------------------SLRS-----------------------------------
256 25== NVA------------------SLRS-----------------------------------
257 26== NVA------------------SLRA-----------------------------------
258 27== NAK------------------ELRK-----------------------------------
259 28== NAK------------------ELRK-----------------------------------
260 29== -----------FPRVEPDSVIALNG-----------------------------------
261 30== -----------FPRVQPESVISLNG-----------------------------------
262 31=p -----------FPRVQPESVISLNG-----------------------------------
263 32== GADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC-------------
264 33=p GAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC-------------
265 34== RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
266 35=p RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
267 36== GVG---------------------------------------------PPP---------
268
269
270 1== ------------------------------------------------------------
271 2== ------------------------------------------------------------
272 3== ------------------------------------------------------------
273 4=p ------------------------------------------------------------
274 5=p ------------------------------------------------------------
275 6== ------------------------------------------------------------
276 7== ------------------------------------------------------------
277 8=opsin, ------------------------------------------------------------
278 9== ------------------------------------------------------------
279 10== ------------------------------------------------------------
280 11== ------------------------------------------------------------
281 12== ------------------------------------------------------------
282 13== ------------------------------------------------------------
283 14== ------------------------------------------------------------
284 15== ------------------------------------------------------------
285 16== ------------------------------------------------------------
286 17== ------------------------------------------------------------
287 18== ------------------------------------------------------------
288 19== ------------------------------------------------------------
289 20== ------------------------------------------------------------
290 21== ------------------------------------------------------------
291 22== ------------------------------------------------------------
292 23== ------------------------------------------------------------
293 24== ------------------------------------------------------------
294 25== ------------------------------------------------------------
295 26== ------------------------------------------------------------
296 27== ------------------------------------------------------------
297 28== ------------------------------------------------------------
298 29== ---------------------------IVKLQKE-------------------VEECAN-
299 30== ---------------------------VVKLQKE-------------------VEECAN-
300 31=p ---------------------------VVKLQKE-------------------VEECAN-
301 32== -----------------------------------ANGAVRQGDDGAALEVIEVHRVGNS
302 33=p -----------------------------------TNGAVRQGDDEATLEVIEVHRVGNS
303 34== LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
304 35=p LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
305 36== VPAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANG
306
307
308 1== -----------------------------------STQKAEKEVTRMVVLMVIGFLVCWV
309 2== -----------------------------------TTQKAEKEVTRMVIIMVIFFLICWL
310 3== -----------------------------------TTQKAEKEVTRMVILMVLGFMLAWT
311 4=p -----------------------------------STQKAEREVTKMVILMVFGFLIAWT
312 5=p -----------------------------------STQKAEREVTKMVILMVLGFLVAWT
313 6== -----------------------------------STQKAEREVTKMVVVMVLGFLVCWA
314 7== -----------------------------------TTQKAEREVSRMVVVMVGSFCVCYV
315 8=opsin, -----------------------------------STQKAEKEVTRMVVVMVLAFC----
316 9== -----------------------------------STQKAEKEVTRMVVVMVLAFCFCWG
317 10== -----------------------------------STQKAEKEVTRMVVVMIFAYCVCWG
318 11== -----------------------------------STQKAEREVSRMVVVMIVAFCICWG
319 12== -----------------------------------STQKAEKEVSRMVVVMIVAYCFCWG
320 13== -----------------------------------TTQRAEREVTRMVIVMVMAFLLCWL
321 14== -------------------------------NVDKNKETAEIRIAKAAITICFLFFCSWT
322 15== -------------------------------NVDKSKEAAEIRIAKAAITICFLFFASWT
323 16== -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
324 17== -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
325 18== --------------------------------NEADAQRAEIRIAKTALVNVSLWFICWT
326 19== --------------------------------NEAETQRAEIRIAKTALVNVSLWFICWT
327 20== --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
328 21== --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
329 22== --------------------------------SEDADKSAEGKLAKVALVTISLWFMAWT
330 23== --------------------------------SEDCDKSAEGKLAKVALTTISLWFMAWT
331 24== --------------------------------SEDCDKSAENKLAKVALTTISLWFMAWT
332 25== --------------------------------SENQNTSAECKLAKVALMTISLWFMAWT
333 26== -------------------------------NADQQKQSAECRLAKVAMMTVGLWFMAWT
334 27== ---------------------------------AQAGASAEMKLAKISMVIITQFMLSWS
335 28== ---------------------------------AQAGANAEMRLAKISIVIVSQFLLSWS
336 29== -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
337 30== -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
338 31=p -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
339 32== KEHLPLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
340 33=p KEHLPLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
341 34== KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
342 35=p KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
343 36== LEADPPTTGYGAVAAAYYPSLVRR------KPKEAADSKRERKAAKTLAIITGAFVACWL
344 * . :
345
346 1== PYASVAFYIFT---HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLC
347 2== PYASVAMYIFT---HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLC
348 3== PYAVVAFWIFT---NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC
349 4=p PYATVAAWIFF---NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF
350 5=p PYATVAAWIFF---NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF
351 6== PYASFSLWIVS---HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMVC
352 7== PYAAFAMYMVN---NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC
353 8=opsin, ------------------------------------------------------------
354 9== PYAFFACFAAA---NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-
355 10== PYTFFACFAAA---NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-
356 11== PYASFVSFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-
357 12== PYTFFACFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-
358 13== PYSTFALVVAT---HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLC
359 14== PYGVMSLIGAF---GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCP
360 15== PYGVMSLIGAF---GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCP
361 16== PYGVMSLIGAF---GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
362 17== PYGVMSLIGAF---GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCP
363 18== PYALISLKGVM---GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLP
364 19== PYAAITIQGLL---GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLP
365 20== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
366 21== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
367 22== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
368 23== PYLVICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP
369 24== PYLIICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP
370 25== PYLVINFSGIF---NL-VK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP
371 26== PYLIISWAGVF---SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP
372 27== PYAIIALLAQF---GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFP
373 28== PYAVVALLAQF---GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP
374 29== PFFLLSTARPFICGTSCSC-IPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
375 30== PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQ
376 31=p PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
377 32== PFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
378 33=p PFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
379 34== PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
380 35=p PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
381 36== PFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLC
382
383
384 1== C-GKNPLGDDE-SGA-STSKTEVSSVS-TSPV----------------------------
385 2== C-GKNPLGDDE-ASA-TASKTE------TSQV----------------------------
386 3== C-GKNPFGDEDVSSTVSQSKTEVSSVS-SSQV----------------------------
387 4=p C-GKNPLGDDE-SSTVSTSKTEVSS------V----------------------------
388 5=p C-GKNPLGDEE-SSTVSTSKTEVSS------V----------------------------
389 6== --GKN-IEEDE-AST-SSQVTQVSSVA-PEK-----------------------------
390 7== --GKA-MTDES-DTC-SSQKTEVSTVS-STQV----------------------------
391 8=opsin, ------------------------------------------------------------
392 9== --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
393 10== --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
394 11== --GKK-VDDGS-EAS-TTSRTEVSSVS-NSSV----------------------------
395 12== --GKK-VDDGS-EVS--TSRTEVSSVS-NSSV----------------------------
396 13== C-GYQPQRTGKASPGTPGPHADVTAAGLRNKV----------------------------
397 14== WLALNEKAPES-SAV-ASTST---TQE-PQQT----------------------------
398 15== WLAISEKAPES-RAA-ISTST---TQE-QQQT----------------------------
399 16== WLGVNEKSGEI-SSA-QSTTT---QEQ--QQT----------------------------
400 17== WLGVNEKSGEA-SSA-QSTTT---QEQ-TQQT----------------------------
401 18== WFCVHETETKS-NDD-SQSNS---TVA-Q-------------------------------
402 19== WFCVHEKDPND-VEE-NQSSN---TQT-Q-------------------------------
403 20== CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
404 21== CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
405 22== CCVFGKVDDGK-SSE-AQSQA-TTSEA-E-------------------------------
406 23== MCVFGNTDEPK-PDA-PASDTETTSEA-D-------------------------------
407 24== MCVCGTTDEPK-PDA-PPSDTETTSEA-E-------------------------------
408 25== SLACA-AEPSS-DAV-STTSG-TTTVT-DNEK----------------------------
409 26== SLACGSGESGS-DVK-SEASA-TTTME-EKPK----------------------------
410 27== WLLTCCQFDEK-ECE-DANDAEEEVVA-SER---GGESRDAAQMKEMMAMMQKMQAQQAA
411 28== WVLTCCQFDDK-ETE-DDKDAETEIPA-GESSD-AAPSADAAQMKEMMAMMQKMQQQQAA
412 29== --CQYRNINRKLSAA-GMHEALKLAER-PERPEFVLQNADYCRKKG--------------
413 30== --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
414 31=p --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
415 32== --CKFCR-----------------------------------------------------
416 33=p --CKFCR-----------------------------------------------------
417 34== --GKYRR-----------------------------------------------------
418 35=p --GKYRR-----------------------------------------------------
419 36== --GRRVR-RRR-------------------------------------------------
420
421
422 1== ------------------------------------------------------------
423 2== ------------------------------------------------------------
424 3== ------------------------------------------------------------
425 4=p ------------------------------------------------------------
426 5=p ------------------------------------------------------------
427 6== ------------------------------------------------------------
428 7== ------------------------------------------------------------
429 8=opsin, ------------------------------------------------------------
430 9== ------------------------------------------------------------
431 10== ------------------------------------------------------------
432 11== ------------------------------------------------------------
433 12== ------------------------------------------------------------
434 13== ---------------------------------------MP-------------------
435 14== ------------------------------------------------------------
436 15== ------------------------------------------------------------
437 16== ------------------------------------------------------------
438 17== ------------------------------------------------------------
439 18== ------------------------------------------------------------
440 19== ------------------------------------------------------------
441 20== ------------------------------------------------------------
442 21== ------------------------------------------------------------
443 22== ------------------------------------------------------------
444 23== ------------------------------------------------------------
445 24== ------------------------------------------------------------
446 25== ------------------------------------------------------------
447 26== ------------------------------------------------------------
448 27== YQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGA
449 28== YPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AA
450 29== ------------------------------------------------------------
451 30== ------------------------------------------------------------
452 31=p ------------------------------------------------------------
453 32== ------------------------------------------------------------
454 33=p ------------------------------------------------------------
455 34== ------------------------------------------------------------
456 35=p ------------------------------------------------------------
457 36== ------------------------------------------------------------
458
459
460 1== ---------SPA
461 2== ---------APA
462 3== ---------SPA
463 4=p ---------SPA
464 5=p ---------SPA
465 6== ------------
466 7== ---------GPN
467 8=opsin, ------------
468 9== ---------SPA
469 10== ---------SPA
470 11== ---------APA
471 12== ---------SPA
472 13== --------AHPV
473 14== ---------TAA
474 15== ---------TAA
475 16== ---------TAA
476 17== ---------SAA
477 18== ---------DKA
478 19== ---------EKS
479 20== ---------SKA
480 21== ---------SKA
481 22== ---------SKA
482 23== ---------SKA
483 24== ---------SKD
484 25== ---------SNA
485 26== --------IPEA
486 27== PPQGVDNQAYQA
487 28== PPQGVDNQAYQA
488 29== ---------HDS
489 30== ---------HDT
490 31=p ---------HDT
491 32== -----------Q
492 33=p -----------R
493 34== ---------GHR
494 35=p ---------GHR
495 36== ---------APQ
496