Mercurial > repos > rnateam > mafft
comparison test-data/mafft_nwns_result.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author | bgruening |
---|---|
date | Wed, 20 Mar 2024 07:34:52 +0000 |
parents | 6f28e90db932 |
children |
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14:6f28e90db932 | 15:bf28a8cff401 |
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1 CLUSTAL format alignment by MAFFT NW-NS-2 (v7.455) | |
2 | |
3 | |
4 1== ----------------------------------------MNG----------------T | |
5 2== ----------------------------------------MNG----------------T | |
6 3== ----------------------------------------MNG----------------T | |
7 4=p ----------------------------------------MNG----------------T | |
8 5=p ----------------------------------------MNG----------------T | |
9 6== ----------------------------------------MKQ----------------V | |
10 7== ----------------------------------------MRK----------------M | |
11 8=opsin, ------------------------------------------------------------ | |
12 9== ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
13 10== ----------------------------------------MAQQWSLQRLAGRHPQDSYE | |
14 11== ----------------------------------------MTEAWNVAVFAARRSRDD-D | |
15 12== ----------------------------------------MAA-WEAAFAARRRHEE--E | |
16 13== ----------------------------------------MS-----------------S | |
17 14== ----------MESGNVSS------------SLFGNVST-ALRP----------------E | |
18 15== ----------MEYHNVSS------------VL-GNVSS-VLRP----------------D | |
19 16== ----------ME------------------PL-CNASEPPLRP----------------E | |
20 17== ----------MD------------------AL-CNASEPPLRP----------------E | |
21 18== --------------------------------MTNATGPQMAY----------------Y | |
22 19== --------------------------------MANVTGPQMAF----------------Y | |
23 20== ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
24 21== ----------ME----SF------------AVAAAQLGPHFAP----------------L | |
25 22== ----------MD----SF------------AAVATQLGPQFAA----------------P | |
26 23== -----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q | |
27 24== -----MERSLLP----EP------------PLAMALLGPRFEA----------------Q | |
28 25== --------------------------------MIAVSGPSYEA----------------F | |
29 26== ----------------------------------MANQLSYSS----------------L | |
30 27== ---------------------------------------MVES----------------T | |
31 28== ----------------------------------------MGR----------------D | |
32 29== ---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D | |
33 30== ------------------------------------------------------------ | |
34 31=p ------------------------------------------------------------ | |
35 32== ----------MDVLSP-------------------------------------------- | |
36 33=p ----------MDVFSF-------------------------------------------- | |
37 34== MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
38 35=p MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T | |
39 36== -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T | |
40 | |
41 | |
42 1== E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL | |
43 2== E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML | |
44 3== E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV | |
45 4=p E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL | |
46 5=p E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL | |
47 6== PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM | |
48 7== S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ | |
49 8=opsin, ------------------------------------------------------------ | |
50 9== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
51 10== DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT | |
52 11== DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV | |
53 12== DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT | |
54 13== NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV | |
55 14== ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL | |
56 15== ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL | |
57 16== AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
58 17== ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML | |
59 18== GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL | |
60 19== GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL | |
61 20== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
62 21== S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL | |
63 22== S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL | |
64 23== SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL | |
65 24== TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL | |
66 25== SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL | |
67 26== GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL | |
68 27== TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV | |
69 28== LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL | |
70 29== PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI | |
71 30== ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
72 31=p ------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI | |
73 32== ---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT | |
74 33=p ---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT | |
75 34== SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
76 35=p SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT | |
77 36== VVPN--TTWW------------QASAPFDTPAALVRAAAK-------------------- | |
78 | |
79 | |
80 1== AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM | |
81 2== AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL | |
82 3== CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW | |
83 4=p ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI | |
84 5=p AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI | |
85 6== SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF | |
86 7== AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC | |
87 8=opsin, ------------------------------------------DLAETVIA-STISIVNQV | |
88 9== SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV | |
89 10== SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV | |
90 11== SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI | |
91 12== SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI | |
92 13== AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI | |
93 14== GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF | |
94 15== GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF | |
95 16== GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF | |
96 17== GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF | |
97 18== GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF | |
98 19== GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF | |
99 20== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
100 21== TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
101 22== TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY | |
102 23== GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
103 24== GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY | |
104 25== GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY | |
105 26== GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF | |
106 27== GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF | |
107 28== GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF | |
108 29== GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
109 30== GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
110 31=p GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL | |
111 32== SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
112 33=p SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV | |
113 34== SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
114 35=p SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI | |
115 36== AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV | |
116 . | |
117 | |
118 1== N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM | |
119 2== H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM | |
120 3== N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM | |
121 4=p N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA | |
122 5=p N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA | |
123 6== N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA | |
124 7== N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT | |
125 8=opsin, S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
126 9== Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV | |
127 10== S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV | |
128 11== F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII | |
129 12== S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA | |
130 13== N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS | |
131 14== H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA | |
132 15== H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA | |
133 16== H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
134 17== H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI | |
135 18== SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV | |
136 19== SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF | |
137 20== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
138 21== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
139 22== F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG | |
140 23== Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
141 24== Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM | |
142 25== Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI | |
143 26== A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL | |
144 27== M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL | |
145 28== L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI | |
146 29== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
147 30== IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
148 31=p IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK | |
149 32== L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
150 33=p L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA | |
151 34== S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
152 35=p S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL | |
153 36== V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM | |
154 : : * : : :*: : : | |
155 | |
156 1== GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF | |
157 2== GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF | |
158 3== GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF | |
159 4=p GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF | |
160 5=p GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF | |
161 6== GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF | |
162 7== VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF | |
163 8=opsin, GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
164 9== GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
165 10== GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM | |
166 11== GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM | |
167 12== GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM | |
168 13== GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF | |
169 14== MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
170 15== MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF | |
171 16== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
172 17== MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF | |
173 18== FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF | |
174 19== MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF | |
175 20== KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
176 21== KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
177 22== KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS | |
178 23== KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS | |
179 24== KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS | |
180 25== RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG | |
181 26== LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG | |
182 27== MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY | |
183 28== MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF | |
184 29== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
185 30== MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
186 31=p MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST | |
187 32== LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
188 33=p LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST | |
189 34== MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
190 35=p MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST | |
191 36== MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT | |
192 : | |
193 | |
194 1== VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ-------------------------- | |
195 2== VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ-------------------------- | |
196 3== VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ-------------------------- | |
197 4=p VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
198 5=p ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ-------------------------- | |
199 6== CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA-------------------------- | |
200 7== IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ-------------------------- | |
201 8=opsin, VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
202 9== VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK-------------------------- | |
203 10== VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK-------------------------- | |
204 11== ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK-------------------------- | |
205 12== VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK-------------------------- | |
206 13== VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK-------------------------- | |
207 14== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
208 15== FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK------------------------- | |
209 16== FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK------------------------- | |
210 17== LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK------------------------- | |
211 18== VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
212 19== IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK------------------------- | |
213 20== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
214 21== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
215 22== IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK------------------------- | |
216 23== LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK------------------------- | |
217 24== LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK------------------------- | |
218 25== IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK------------------------- | |
219 26== LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK------------------------- | |
220 27== FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
221 28== ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR------------------------- | |
222 29== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
223 30== AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
224 31=p AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF---------------------- | |
225 32== FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
226 33=p FGAFYIPLLLMLVLYGRIF-------RAARFRIRK------------------------- | |
227 34== VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
228 35=p VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY | |
229 36== ASSFYVPVLIILILYWRIY-------QTARKRIR-------------------------- | |
230 * : * : | |
231 | |
232 1== ------------------------------------------------------------ | |
233 2== ------------------------------------------------------------ | |
234 3== ------------------------------------------------------------ | |
235 4=p ------------------------------------------------------------ | |
236 5=p ------------------------------------------------------------ | |
237 6== ------------------------------------------------------------ | |
238 7== ------------------------------------------------------------ | |
239 8=opsin, ------------------------------------------------------------ | |
240 9== ------------------------------------------------------------ | |
241 10== ------------------------------------------------------------ | |
242 11== ------------------------------------------------------------ | |
243 12== ------------------------------------------------------------ | |
244 13== ------------------------------------------------------------ | |
245 14== --------------------------------------------------MN-------- | |
246 15== --------------------------------------------------MN-------- | |
247 16== --------------------------------------------------MN-------- | |
248 17== --------------------------------------------------MN-------- | |
249 18== --------------------------------------------------MN-------- | |
250 19== --------------------------------------------------MN-------- | |
251 20== --------------------------------------------------MN-------- | |
252 21== --------------------------------------------------MN-------- | |
253 22== --------------------------------------------------MN-------- | |
254 23== --------------------------------------------------MN-------- | |
255 24== --------------------------------------------------MN-------- | |
256 25== --------------------------------------------------MN-------- | |
257 26== --------------------------------------------------MN-------- | |
258 27== --------------------------------------------------LN-------- | |
259 28== --------------------------------------------------LN-------- | |
260 29== ---------------------------------PGFPRV----EPDSVIALNG------- | |
261 30== ---------------------------------PGFPRV----QPESVISLNG------- | |
262 31=p ---------------------------------PGFPRV----QPESVISLNG------- | |
263 32== --------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-- | |
264 33=p --------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-- | |
265 34== SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
266 35=p SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--- | |
267 36== -------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA | |
268 | |
269 | |
270 1== ------------------------------------------------------------ | |
271 2== ------------------------------------------------------------ | |
272 3== ------------------------------------------------------------ | |
273 4=p ------------------------------------------------------------ | |
274 5=p ------------------------------------------------------------ | |
275 6== ------------------------------------------------------------ | |
276 7== ------------------------------------------------------------ | |
277 8=opsin, ------------------------------------------------------------ | |
278 9== ------------------------------------------------------------ | |
279 10== ------------------------------------------------------------ | |
280 11== ------------------------------------------------------------ | |
281 12== ------------------------------------------------------------ | |
282 13== ------------------------------------------------------------ | |
283 14== --VESL------------------------------------------------------ | |
284 15== --VDSL------------------------------------------------------ | |
285 16== --VESL------------------------------------------------------ | |
286 17== --VESL------------------------------------------------------ | |
287 18== --VSTL------------------------------------------------------ | |
288 19== --VTNL------------------------------------------------------ | |
289 20== --VKSL------------------------------------------------------ | |
290 21== --VKSL------------------------------------------------------ | |
291 22== --VKSL------------------------------------------------------ | |
292 23== --VKSL------------------------------------------------------ | |
293 24== --VKSL------------------------------------------------------ | |
294 25== --VASL------------------------------------------------------ | |
295 26== --VASL------------------------------------------------------ | |
296 27== --AKEL------------------------------------------------------ | |
297 28== --AKEL------------------------------------------------------ | |
298 29== --IVKL----------------------QK---------EVEECAN-------------- | |
299 30== --VVKL----------------------QK---------EVEECAN-------------- | |
300 31=p --VVKL----------------------QK---------EVEECAN-------------- | |
301 32== -------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-- | |
302 33=p -------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-- | |
303 34== -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
304 35=p -------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-- | |
305 36== AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV | |
306 | |
307 | |
308 1== -------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H | |
309 2== -------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H | |
310 3== -------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N | |
311 4=p -------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N | |
312 5=p -------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N | |
313 6== -------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H | |
314 7== -------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N | |
315 8=opsin, -------------ESESTQK------AEKEVTRMVVVMVLAFC----------------- | |
316 9== -------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N | |
317 10== -------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N | |
318 11== -------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N | |
319 12== -------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N | |
320 13== -------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H | |
321 14== ----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G | |
322 15== ----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G | |
323 16== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
324 17== ----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G | |
325 18== ----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G | |
326 19== ----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G | |
327 20== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
328 21== ----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K | |
329 22== ----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K | |
330 23== ----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K | |
331 24== ----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K | |
332 25== ----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N | |
333 26== ----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S | |
334 27== ----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G | |
335 28== ----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G | |
336 29== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
337 30== ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
338 31=p ----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC | |
339 32== PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
340 33=p SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C | |
341 34== -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
342 35=p -----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V | |
343 36== AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C | |
344 * . : | |
345 | |
346 1== QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL | |
347 2== QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL | |
348 3== KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF | |
349 4=p KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL | |
350 5=p KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL | |
351 6== RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I | |
352 7== RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M | |
353 8=opsin, ------------------------------------------------------------ | |
354 9== PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
355 10== PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V | |
356 11== PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V | |
357 12== PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V | |
358 13== KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T | |
359 14== DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N | |
360 15== DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S | |
361 16== DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N | |
362 17== DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N | |
363 18== DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T | |
364 19== NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K | |
365 20== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
366 21== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
367 22== F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V | |
368 23== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T | |
369 24== I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T | |
370 25== L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A | |
371 26== SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G | |
372 27== PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C | |
373 28== PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T | |
374 29== GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
375 30== GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR-- | |
376 31=p GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR-- | |
377 32== ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ---- | |
378 33=p ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR---- | |
379 34== DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
380 35=p DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR-- | |
381 36== DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR-- | |
382 | |
383 | |
384 1== GDDE--SGASTSKTEVSSVS-TSPVSPA-------------------------------- | |
385 2== GDDE--ASATASKTE------TSQVAPA-------------------------------- | |
386 3== GDEDVSSTVSQSKTEVSSVS-SSQVSPA-------------------------------- | |
387 4=p GDDE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
388 5=p GDEE-SSTVSTSKTEVSS------VSPA-------------------------------- | |
389 6== EEDE--ASTSSQVTQVSS------VAPEK------------------------------- | |
390 7== TDES--DTCSSQKTEVSTVS-STQVGPN-------------------------------- | |
391 8=opsin, ------------------------------------------------------------ | |
392 9== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
393 10== DDGS--ELSSASKTEVSSV---SSVSPA-------------------------------- | |
394 11== DDGS--EASTTSRTEVSSVS-NSSVAPA-------------------------------- | |
395 12== DDGS--EVST-SRTEVSSVS-NSSVSPA-------------------------------- | |
396 13== GKAS--PGTPGPHADVTAAGLRNKVMPAHPV----------------------------- | |
397 14== EKAP--ESSAVASTSTTQEP--QQTTAA-------------------------------- | |
398 15== EKAP--ESRAAISTSTTQEQ--QQTTAA-------------------------------- | |
399 16== EKSG--EISSAQST-TTQEQ--QQTTAA-------------------------------- | |
400 17== EKSG--EASSAQST-TTQEQ-TQQTSAA-------------------------------- | |
401 18== ETKS--NDDSQSNSTVAQDK-A-------------------------------------- | |
402 19== DPND--VEENQSSNTQTQEK-S-------------------------------------- | |
403 20== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
404 21== DDGK--SSDAQSQA-TASEA-ESKA----------------------------------- | |
405 22== DDGK--SSEAQSQA-TTSEA-ESKA----------------------------------- | |
406 23== DEPK--PDAPASDTETTSEA-DSKA----------------------------------- | |
407 24== DEPK--PDAPPSDTETTSEA-ESKD----------------------------------- | |
408 25== EPSS--DAVSTTSGTTTVTD-NEKSNA--------------------------------- | |
409 26== ESGS--DVKSEASATTTMEE-KPKIPEA-------------------------------- | |
410 27== EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP | |
411 28== EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP | |
412 29== ------KLSAAGMHEALKLAERPERPEF------------VLQNADY------------- | |
413 30== ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
414 31=p ------KLSAAGMHEALKLAERPERSEF------------VLQNSDH------------- | |
415 32== ------------------------------------------------------------ | |
416 33=p ------------------------------------------------------------ | |
417 34== ------------------------------------------------------------ | |
418 35=p ------------------------------------------------------------ | |
419 36== ------A---------------PQ------------------------------------ | |
420 | |
421 | |
422 1== --------------------------------------------------------- | |
423 2== --------------------------------------------------------- | |
424 3== --------------------------------------------------------- | |
425 4=p --------------------------------------------------------- | |
426 5=p --------------------------------------------------------- | |
427 6== --------------------------------------------------------- | |
428 7== --------------------------------------------------------- | |
429 8=opsin, --------------------------------------------------------- | |
430 9== --------------------------------------------------------- | |
431 10== --------------------------------------------------------- | |
432 11== --------------------------------------------------------- | |
433 12== --------------------------------------------------------- | |
434 13== --------------------------------------------------------- | |
435 14== --------------------------------------------------------- | |
436 15== --------------------------------------------------------- | |
437 16== --------------------------------------------------------- | |
438 17== --------------------------------------------------------- | |
439 18== --------------------------------------------------------- | |
440 19== --------------------------------------------------------- | |
441 20== --------------------------------------------------------- | |
442 21== --------------------------------------------------------- | |
443 22== --------------------------------------------------------- | |
444 23== --------------------------------------------------------- | |
445 24== --------------------------------------------------------- | |
446 25== --------------------------------------------------------- | |
447 26== --------------------------------------------------------- | |
448 27== QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA | |
449 28== QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA | |
450 29== --------------------------------------------CRKKGHDS----- | |
451 30== --------------------------------------------CGKKGHDT----- | |
452 31=p --------------------------------------------CGKKGHDT----- | |
453 32== --------------------------------------------------------- | |
454 33=p --------------------------------------------------------- | |
455 34== --------------------------------------------------------- | |
456 35=p --------------------------------------------------------- | |
457 36== --------------------------------------------------------- | |
458 |