diff test-data/mafft_fftns_result.aln @ 0:a4e086689fae draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1fc2105007248c6b9460c0f3a98e6589477d0b13

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_fftns_result.aln	Thu Jun 18 08:59:56 2015 -0400
@@ -0,0 +1,504 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+-------------------MNGTE------------------------GDNF--------
+YVP----F-SNKTGLARSPY----------------EYPQY-------YLAEPWK-----
+----YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-F
+TVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FR
+FGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNN
+ESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE------------------------
+---------------------------------------------------AAAAQQ---
+------------------------------------------------------------
+--------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-
+HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC---------GKN
+PLGD-DE--SGASTSKTEVSSVS-TSPV--------------------------------
+--------------------------------------------SPA-------------
+------
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+-------------------MNGTE------------------------GPNF--------
+YVP----F-SNITGVVRSPF----------------EQPQY-------YLAEPWQ-----
+----FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-F
+TTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FR
+FGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNN
+ESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE------------------------
+---------------------------------------------------AAAQQQ---
+------------------------------------------------------------
+--------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-
+HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC---------GKN
+PLGD-DE--ASATASKTE------TSQV--------------------------------
+--------------------------------------------APA-------------
+------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+-------------------MNGTE------------------------GINF--------
+YVP----M-SNKTGVVRSPF----------------EYPQY-------YLAEPWK-----
+----YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-F
+TVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FR
+FSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHN
+ESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE------------------------
+---------------------------------------------------AAAQQQ---
+------------------------------------------------------------
+--------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-
+NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC---------GKN
+PFGD-EDVSSTVSQSKTEVSSVS-SSQV--------------------------------
+--------------------------------------------SPA-------------
+------
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+-------------------MNGTE------------------------GKNF--------
+YVP----M-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
+----FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-F
+TVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
+FSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNN
+ESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA------------------------
+---------------------------------------------------AAAQQQ---
+------------------------------------------------------------
+--------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-
+NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC---------GKN
+PLGD-DE-SSTVSTSKTEVSS------V--------------------------------
+--------------------------------------------SPA-------------
+------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+-------------------MNGTE------------------------GNNF--------
+YVP----L-SNRTGLVRSPF----------------EYPQY-------YLAEPWQ-----
+----FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-F
+TVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FK
+FSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNN
+ESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA------------------------
+---------------------------------------------------AAAQQQ---
+------------------------------------------------------------
+--------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-
+NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC---------GKN
+PLGD-EE-SSTVSTSKTEVSS------V--------------------------------
+--------------------------------------------SPA-------------
+------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+-------------------MKQVPEF----------------------HEDF--------
+YIPIPLDI-NNLS--AYSPF----------------LVPQD-------HLGNQGI-----
+----FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-S
+PLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FT
+FKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNN
+ESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL------------------------
+---------------------------------------------------AAKAQA---
+------------------------------------------------------------
+--------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-
+HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC---------GKN
+-IEE-DE--ASTSSQVTQVSS------V--------------------------------
+--------------------------------------------APEK------------
+------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+-------------------MRKMS------------------------EEEF--------
+YL-----F-KNIS--SVGPW----------------DGPQY-------HIAPVWA-----
+----FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-V
+FPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FR
+FSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRS
+ESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA------------------------
+---------------------------------------------------VAAQQQ---
+------------------------------------------------------------
+--------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-
+NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC---------GKA
+-MTD-ES--DTCSSQKTEVSTVS-STQV--------------------------------
+--------------------------------------------GPN-------------
+------
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+--------------------------------------------------DLAETVIA-S
+TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
+FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
+QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
+---------------------------------------------------VAKQQK---
+------------------------------------------------------------
+--------------ESESTQK------AEKEVTRMVVVMVLAFC----------------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+-------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
+QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
+----YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
+TISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VR
+FDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
+QSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA------------------------
+---------------------------------------------------VAKQQK---
+------------------------------------------------------------
+--------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-
+NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
+-VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
+--------------------------------------------SPA-------------
+------
+>    10== Z68193   1 human Red Opsin <>[]
+-------------------MAQQWSL----------QRLAGRHPQDSYEDST--------
+QSSI-FTY-TNSNS-TRGPF----------------EGPNY-------HIAPRWV-----
+----YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-S
+TISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VR
+FDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGV
+QSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA------------------------
+---------------------------------------------------VAKQQK---
+------------------------------------------------------------
+--------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-
+NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF----------GKK
+-VDD-GS--ELSSASKTEVSSV---SSV--------------------------------
+--------------------------------------------SPA-------------
+------
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+-------------------MTEAWNV----------AVFAARRSRDD-DDTT--------
+RGSV-FTY-TNTNN-TRGPF----------------EGPNY-------HIAPRWV-----
+----YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-S
+TISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IK
+FDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGC
+QSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA------------------------
+---------------------------------------------------VAAQQK---
+------------------------------------------------------------
+--------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-
+NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF----------GKK
+-VDD-GS--EASTTSRTEVSSVS-NSSV--------------------------------
+--------------------------------------------APA-------------
+------
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+-------------------MA-AWEA----------AFAARRRHEE--EDTT--------
+RDSV-FTY-TNSNN-TRGPF----------------EGPNY-------HIAPRWV-----
+----YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-S
+TISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IK
+FDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGV
+QSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA------------------------
+---------------------------------------------------VAAQQK---
+------------------------------------------------------------
+--------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-
+NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF----------GKK
+-VDD-GS--EVST-SRTEVSSVS-NSSV--------------------------------
+--------------------------------------------SPA-------------
+------
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+-------------------MS---------------------------SNSS--------
+QAP--------PNG-TPGPF----------------DGPQW------PYQAPQST-----
+----YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-S
+SVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQ
+FQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--
+NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA------------------------
+---------------------------------------------------AAAQQK---
+------------------------------------------------------------
+--------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-
+HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY-----QPQR
+-TGK-AS--PGTPGPHADVTAAGLRNKV--------------------------------
+--------------------------------------------MPAHP---V-------
+------
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+----------MESGNVSSSLFGNVST----------ALRPEARL----SA----------
+-ETRLLGW--------NVPP----------------EELR--------HIPEHWLTYPEP
+PESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--T
+PIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--K
+MTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDT
+RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
+---------------------------------------------------LRDQAKKM-
+--------------------------------NVESL-----------------------
+-----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-
+GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL--------N
+EKAP-ES-SAVASTSTTQEP-QQ-TTAA--------------------------------
+------------------------------------------------------------
+------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+----------MEYHNVSSVL-GNVSS----------VLRPDARL----SA----------
+-ESRLLGW--------NVPP----------------DELR--------HIPEHWLIYPEP
+PESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--T
+PIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--K
+MTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDT
+RLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA------------------------
+---------------------------------------------------LRDQAKKM-
+--------------------------------NVDSL-----------------------
+-----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-
+GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI--------S
+EKAP-ES-RAAISTSTTQEQ-QQ-TTAA--------------------------------
+------------------------------------------------------------
+------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+----------ME------PLCNASEP----------PLRPEAR-----SSGN--------
+GDLQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
+PASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
+PIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
+MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
+RLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA------------------------
+---------------------------------------------------LREQAKKM-
+--------------------------------NVESL-----------------------
+-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
+GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV--------N
+EKSG-EI-SSAQST-TTQEQ-QQ-TTAA--------------------------------
+------------------------------------------------------------
+------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+----------MD------ALCNASEP----------PLRPEARM----SSGS--------
+DELQFLGW--------NVPP----------------DQIQ--------YIPEHWLTQLEP
+PASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--A
+PIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--N
+MTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDT
+RLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA------------------------
+---------------------------------------------------LREQAKKM-
+--------------------------------NVESL-----------------------
+-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-
+GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV--------N
+EKSG-EA-SSAQST-TTQEQTQQ-TSAA--------------------------------
+------------------------------------------------------------
+------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+-------------------MTNATGP----------QMAYYGAA----SMD---------
+-----FGYPEGVSIVDFVRP----------------EIKP--------YVHQHWYNYPPV
+NPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-V
+PFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PK
+LTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNT
+FSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA------------------------
+---------------------------------------------------MRAQAKKM-
+--------------------------------NVSTL-----------------------
+-----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-
+GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HET
+ETKS-ND-DSQSNSTVAQDKA---------------------------------------
+------------------------------------------------------------
+------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+-------------------MANVTGP----------QMAFYGSG----AAT---------
+-----FGYPEGMTVADFVPD----------------RVKH--------MVLDHWYNYPPV
+NPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-F
+PPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PK
+LTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNT
+ITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA------------------------
+---------------------------------------------------MRAQAKKM-
+--------------------------------NVTNL-----------------------
+-----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-
+GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HEK
+DPND-VE-ENQSSNTQTQEKS---------------------------------------
+------------------------------------------------------------
+------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+----------ME---SFAVAAAQLGP----------HFAPLS------------------
+----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
+DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
+MTIPLALGKM---------------------------YVPEGNLTSCGIDYLE--RDWNP
+RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
+---------------------------------------------------MREQAKKM-
+--------------------------------NVKSL-----------------------
+-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
+KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
+DDGK-SS-DAQSQATASEAESKA-------------------------------------
+------------------------------------------------------------
+------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+----------ME---SFAVAAAQLGP----------HFAPLS------------------
+----------NGSVVDKVTP----------------DMAH--------LISPYWNQFPAM
+DPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
+MTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
+RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
+---------------------------------------------------MREQAKKM-
+--------------------------------NVKSL-----------------------
+-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-
+KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
+DDGK-SS-DAQSQATASEAESKA-------------------------------------
+------------------------------------------------------------
+------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+----------MD---SFAAVATQLGP----------QFAAPS------------------
+----------NGSVVDKVTP----------------DMAH--------LISPYWDQFPAM
+DPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-T
+PMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RP
+MTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNP
+RSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA------------------------
+---------------------------------------------------MREQAKKM-
+--------------------------------NVKSL-----------------------
+-----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-
+KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GKV
+DDGK-SS-EAQSQATTSEAESKA-------------------------------------
+------------------------------------------------------------
+------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+-----MERSHLP---ETPFDLAHSGP----------RFQAQSSG----------------
+----------NGSVLDNVLP----------------DMAH--------LVNPYWSRFAPM
+DPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
+PVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
+MTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNP
+RSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA------------------------
+---------------------------------------------------MREQAKKM-
+--------------------------------NVKSL-----------------------
+-----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-
+KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GNT
+DEPKPDA-PASDTETTSEADSKA-------------------------------------
+------------------------------------------------------------
+------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+-----MERSLLP---EPPLAMALLGP----------RFEAQTGG----------------
+----------NRSVLDNVLP----------------DMAP--------LVNPHWSRFAPM
+DPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-S
+PVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TP
+MTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNP
+RSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA------------------------
+---------------------------------------------------MRDQAKKM-
+--------------------------------NVKSL-----------------------
+-----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-
+KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GTT
+DEPKPDA-PPSDTETTSEAESKD-------------------------------------
+------------------------------------------------------------
+------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+-------------------MIAVSGP----------SYEAFSYG----GQA---------
+----RF---NNQTVVDKVPP----------------DMLH--------LIDANWYQYPPL
+NPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-S
+PPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KP
+LSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLS
+ASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN------------------------
+---------------------------------------------------MREQAKKM-
+--------------------------------NVASL-----------------------
+-----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-
+NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------AA
+EPSS-DA-VSTTSGTTTVTDNEK-SNA---------------------------------
+------------------------------------------------------------
+------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+---------------------MANQL----------SYSSLGWP----YQP---------
+----------NASVVDTMPK----------------EMLY--------MIHEHWYAFPPM
+NPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-M
+PTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-AP
+LTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSS
+ASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ------------------------
+---------------------------------------------------LREQAKKM-
+--------------------------------NVASL-----------------------
+-----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-
+SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GSG
+ESGS-DV-KSEASATTTMEEKPK-IPEA--------------------------------
+------------------------------------------------------------
+------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+------------------------------------MVESTTLV----NQT---------
+-----WWY--NPTVD----------------------------------IHPHWAKFDPI
+PDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGF
+PLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKK
+MSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPST
+RSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE------------------------
+---------------------------------------------------MAAMAKRL-
+--------------------------------NAKEL-----------------------
+-----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-
+GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKEC
+EDAN-DA-EEEVVASER--GGES-RDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
+QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQG---VDNQAYQA
+------
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+-------------------------------------MGRDLRD----NET---------
+-----WWY--NPSIV----------------------------------VHPHWREFDQV
+PDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGF
+PLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKK
+MSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTT
+RSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE------------------------
+---------------------------------------------------MAAMAKRL-
+--------------------------------NAKEL-----------------------
+-----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-
+GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKET
+EDDK-DA-ETEIPAGESSDAAPS-ADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
+QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQG---VDNQAYQA
+------
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+---------MMD-------VNSSGRPDLYGHLRSF-LLPEVGRGLPDLSPDGGADPVAGS
+WAPHLLS---EVTASPAPTW----------------DAPPDNASGCGEQIN--------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
+QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
+-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
+----------------------------------P--------GFPR----VEPDS----
+---VIAL-----------------NGIVKLQ--------KEVEECAN-------------
+-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
+CGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
+-----NINRKLSAAGMHEALKLA-------------------------------------
+-------------------------------------------ERPERPEFVLQNADYCR
+KKGHDS
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+------------------------------------------------------------
+-MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
+QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
+-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
+----------------------------------P--------GFPR----VQPES----
+---VISL-----------------NGVVKLQ--------KEVEECAN-------------
+-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
+CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR---------
+-----NINRKLSAAGMHEALKLA-------------------------------------
+-------------------------------------------ERPERSEFVLQNSDHCG
+KKGHDT
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+------------------------------------------------------------
+-MPHLLSGFLEVTASPAPTW----------------DAPPDNVSGCGEQIN--------Y
+GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-M
+PFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVR
+QNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF---------
+-GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF---------------------
+----------------------------------P--------GFPR----VQPES----
+---VISL-----------------NGVVKLQ--------KEVEECAN-------------
+-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFI
+CGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR---------
+-----NINRKLSAAGMHEALKLA-------------------------------------
+-------------------------------------------ERPERSEFVLQNSDHCG
+KKGHDT
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+----------MD-------VLSPG------------QGNNTTSPPAPFETGG--------
+----------NTTGISDVTV----------------------------------------
+--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
+PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
+RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
+-GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
+---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR-
+--------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG-
+-PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
+CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
+-----RQ-----------------------------------------------------
+------------------------------------------------------------
+------
+>    33=p A35181 serotonin receptor class 1A - rat
+----------MD-------VFSFG------------QGNNTTASQEPFGTGG--------
+----------NVTSISDVTF----------------------------------------
+--SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-L
+PMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNK
+RTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKDH---------
+-GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK------------------------
+---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG-
+--------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG-
+-SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-
+CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC---------
+-----RR-----------------------------------------------------
+------------------------------------------------------------
+------
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
+----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
+SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
+PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
+RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
+-GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
+YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
+--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
+------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
+VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
+-----RGHR---------------------------------------------------
+------------------------------------------------------------
+------
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+MANFTFGDLALD-------VARMG-----GLASTPSGLRSTGLTTPGLSPTG--------
+----------LVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVY
+SHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-M
+PLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRR
+RSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK---------
+-GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLVASPKTE
+YSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS--
+--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS-
+------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-
+VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR---------
+-----RGHR---------------------------------------------------
+------------------------------------------------------------
+------
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+-MEGAEGQEELD-------WEAL-------YLRLP--LQNCSWNSTGWEPNW--------
+----------NVTVVPNTTW---------WQASAPFDTPAALVRAAAK------------
+--------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-M
+PLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHA
+STAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV---------
+-GYQIFATASSFYVPVLIILILYWRIYQTARKRIR-------------------------
+--------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGI
+AAAVVAVIGRPLPTISETTTTGFTNVSS----NNTS---PEKQSCANGLEADPPTTGYGA
+VAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-
+CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV---------
+-----RRRRA--------------------------------------------------
+---------------------------------------------PQ-------------
+------