Mercurial > repos > rnateam > mafft
diff test-data/mafft_auto_linsi.aln @ 15:bf28a8cff401 draft
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mafft_auto_linsi.aln Wed Mar 20 07:34:52 2024 +0000 @@ -0,0 +1,504 @@ +> 1== M63632 1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91] +M------------------NGTE-G------DNFYVPF----SNKTGLARSPYEYPQY-- +--------------------------------------------------YLAEPW---- +---------------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLA +MANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERY +IVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCG +PDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEKEVTRMVVLMVIGFLVCWVPYAS +VAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTL----- +CC-----GKNPLGDDE-SGA-STSK-TEVSSVS-TSPVSPA------------------- +------------------------------------------------------------ +--------------- +> 2== U22180 1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94] +M------------------NGTE-G------PNFYVPF----SNITGVVRSPFEQPQY-- +--------------------------------------------------YLAEPW---- +---------------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA +VADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERY +VVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCG +IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------TTQKAEKEVTRMVIIMVIFFLICWLPYAS +VAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL----- +CC-----GKNPLGDDE-ASA-TASK-TETSQVA-PA------------------------ +------------------------------------------------------------ +--------------- +> 3== M92038 1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9 +M------------------NGTE-G------INFYVPM----SNKTGVVRSPFEYPQY-- +--------------------------------------------------YLAEPW---- +---------------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLA +VADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERY +IVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCG +PDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAV +VAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI----- +CC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA------------------- +------------------------------------------------------------ +--------------- +> 4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish +M------------------NGTE-G------KNFYVPM----SNRTGLVRSPFEYPQY-- +--------------------------------------------------YLAEPW---- +---------------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLA +VAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY +IVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCG +PDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEREVTKMVILMVFGFLIAWTPYAT +VAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI----- +FC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA------------------------ +------------------------------------------------------------ +--------------- +> 5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish +M------------------NGTE-G------NNFYVPL----SNRTGLVRSPFEYPQY-- +--------------------------------------------------YLAEPW---- +---------------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLA +VAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY +IVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCG +PDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEREVTKMVILMVLGFLVAWTPYAT +VAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL----- +FC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA------------------------ +------------------------------------------------------------ +--------------- +> 6== L11864 1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208- +M------------------KQVP-EFH----EDFYIPIPL--DINNLSAYSPFLVPQD-- +--------------------------------------------------HLGNQG---- +---------------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLS +IANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERW +LVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCG +PDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEREVTKMVVVMVLGFLVCWAPYAS +FSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV----- +C------GKN-IEEDE-AST-SSQV-TQVSSVA-PEK----------------------- +------------------------------------------------------------ +--------------- +> 7== M13299 1 human BCP <>[Science232(4747),193-202'86] +M------------------RKMS-E------EEFYL-------FKNISSVGPWDGPQY-- +--------------------------------------------------HIAPVW---- +---------------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS +FGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERY +IVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCG +PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAA +FAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV----- +C------GKA-MTDES-DTC-SSQK-TEVSTVS-STQVGPN------------------- +------------------------------------------------------------ +--------------- +> 8=opsin, greensensitive human (fragment) S07060 +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +--DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW +LVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG +PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEKEVTRMVVVMVLAFC-------- +------------------------------------------------------------ +------------------------------------------------------------ +------------------------------------------------------------ +--------------- +> 9== K03494 1 human GCP <>[Science232(4747),193-202'86] +MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- +--------------------------------------------------HIAPRW---- +---------------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLA +VADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW +MVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG +PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAF +FACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF----- +-------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- +------------------------------------------------------------ +--------------- +> 10== Z68193 1 human Red Opsin <>[] +MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY-- +--------------------------------------------------HIAPRW---- +---------------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLA +VADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW +LVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCG +PDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTF +FACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF----- +-------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA------------------- +------------------------------------------------------------ +--------------- +> 11== M92036 1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92] +MTEAWNVAVFAARRSRDD-DDTTRG------SVFTY-------TNTNNTRGPFEGPNY-- +--------------------------------------------------HIAPRW---- +---------------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLA +FVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERW +FVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCG +PDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEREVSRMVVVMIVAFCICWGPYAS +FVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF----- +-------GKK-VDDGS-EAS-TTSR-TEVSSVS-NSSVAPA------------------- +------------------------------------------------------------ +--------------- +> 12== M62903 1 chicken visual pigment <>[BBRC173,1212-1217'90] +MA-AWE-AAFAARRRHEE-EDTTRD------SVFTY-------TNSNNTRGPFEGPNY-- +--------------------------------------------------HIAPRW---- +---------------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLA +VADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERW +FVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCG +PDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTF +FACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF----- +-------GKK-VDDGS-EVS-T-SR-TEVSSVS-NSSVSPA------------------- +------------------------------------------------------------ +--------------- +> 13== S75720 1 chicken P-opsin <>[Science267(5203),1502-1506'95] +-----------------------MS------SNSSQ-------APPNGTPGPFDGPQW-- +-------------------------------------------------PYQAPQS---- +---------------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA +VADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERY +VVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCG +PNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD------- +------------------------------------------------------------ +------------------------------------------------------------ +-------------------------------TTQRAEREVTRMVIVMVMAFLLCWLPYST +FALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML----- +CCGYQ--PQR-TGKAS-PGT-PGPH-ADVTAAGLRNKVMPAHPV---------------- +------------------------------------------------------------ +--------------- +> 14== M17718 1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87] +M------------------ESGNVS------SSLF------------GNVSTALRPEA-- +-------------------------RLSA---E---TRLLGWNVPPEELRHIPEHWLTYP +----------EPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLA +FCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRF +NVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCT +FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVES +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS-------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGV +MSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL-- +AL-----NEK-APESS-AVA-STST-TQEPQQT--------------------------- +TAA--------------------------------------------------------- +--------------- +> 15== X65879 1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92 +M------------------EYHNVS------SVL-------------GNVSSVLRPDA-- +-------------------------RLSA---E---SRLLGWNVPPDELRHIPEHWLIYP +----------EPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLA +FCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY +NVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCT +FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS-------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGV +MSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL-- +AI-----SEK-APESR-AAI-STST-TQEQQQT--------------------------- +TAA--------------------------------------------------------- +--------------- +> 16== M17730 1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87] +M------------------EPLC------------------------NASEPPLRPEA-- +-------------------------R-SSGNGD---LQFLGWNVPPDQIQYIPEHWLTQL +----------EPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLA +VFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY +NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS +FDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVES +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV +MSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL-- +GV-----NEK-SGEIS-SAQ-STTT-QEQQQTT--------------------------- +AA---------------------------------------------------------- +--------------- +> 17== X65880 1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92 +M------------------DALC------------------------NASEPPLRPEA-- +-------------------------RMSSGSDE---LQFLGWNVPPDQIQYIPEHWLTQL +----------EPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLA +VFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY +NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS +FDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVES +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV +MSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL-- +GV-----NEK-SGEAS-SAQ-STTT-QEQTQQT--------------------------- +SAA--------------------------------------------------------- +--------------- +> 18== D50584 1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1 +M------------------TNAT-------------------------------GPQMAY +-------YG--------------AASMDFGYPE---GVSIVDFVRPEIKPYVHQHWYNYP +----------PVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLA +LSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRY +NIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCS +YDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVST +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------NEADAQRAEIRIAKTALVNVSLWFICWTPYAL +ISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWF-- +CV-----HET-ETKSN-DDS-QSNS-TVAQDKA--------------------------- +------------------------------------------------------------ +--------------- +> 19== D50583 1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1 +M------------------ANVT-------------------------------GPQMAF +-------YG--------------SGAATFGYPE---GMTVADFVPDRVKHMVLDHWYNYP +----------PVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLA +LSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRY +NIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCS +YDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTN +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------NEAETQRAEIRIAKTALVNVSLWFICWTPYAA +ITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWF-- +CV-----HEK-DPNDV-EEN-QSSN-TQTQEKS--------------------------- +------------------------------------------------------------ +--------------- +> 20== K02320 1 D.melanogaster opsin <>[Cell40,851-858'85] +M------------------ESFA-------------------------VAAAQLGPHF-- +------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP +----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA +ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY +QVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCG +IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV +INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- +VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- +------------------------------------------------------------ +--------------- +> 21== K02315 1 D.melanogaster ninaE <>[Cell40,839-850'85] +M------------------ESFA-------------------------VAAAQLGPHF-- +------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP +----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA +ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY +QVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCG +IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV +INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- +VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA------------------- +------------------------------------------------------------ +--------------- +> 22== X65877 1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204' +M------------------DSFA-------------------------AVATQLGPQF-- +------------------------AAPS--------NGSVVDKVTPDMAHLISPYWDQFP +----------AMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA +ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY +QVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCG +IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SEDADKSAEGKLAKVALVTISLWFMAWTPYLV +INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC-- +VF-----GKV-DDGKS-SEA-QSQA-TTSEAES------KA------------------- +------------------------------------------------------------ +--------------- +> 23== M12896 1 D.melanogaster Rh2 <>[Cell44,705-710'86] +M------------------ERSH--------------------LPETPFDLAHSGPRF-- +------------------------QAQSSG------NGSVLDNVLPDMAHLVNPYWSRFA +----------PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA +FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY +NVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACS +IDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLV +ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMC-- +VF-----GNT-DEPKP-DAP-ASDTETTSEADS------KA------------------- +------------------------------------------------------------ +--------------- +> 24== X65878 1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92 +M------------------ERSL--------------------LPEPPLAMALLGPRF-- +------------------------EAQTGG------NRSVLDNVLPDMAPLVNPHWSRFA +----------PMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA +FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRY +NVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACS +IDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SEDCDKSAENKLAKVALTTISLWFMAWTPYLI +ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMC-- +VC-----GTT-DEPKP-DAP-PSDTETTSEAES------KD------------------- +------------------------------------------------------------ +--------------- +> 25== U26026 1 Apis mellifera long-wavelength rhodopsin <>[] +M-------------------------------------------------IAVSGPSY-- +------------------------EAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYP +----------PLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLA +ISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY +NVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACG +TDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVAS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRS--------SENQNTSAECKLAKVALMTISLWFMAWTPYLV +INFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSL-- +AC-----AA--EPSSD-AVS-TTSG-TTTVTDN------EK------------------S +NA---------------------------------------------------------- +--------------- +> 26== L03781 1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93] +M------------------ANQL---------------------------------SY-- +------------------------SSLGWPYQP---NASVVDTMPKEMLYMIHEHWYAFP +----------PMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLA +FSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRY +NVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCT +VDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVAS +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRA-------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLI +ISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSL-- +AC-----GSG-ESGSD-VKS-EASA-TTTMEEK------PKIPEA--------------- +------------------------------------------------------------ +--------------- +> 27== X07797 1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88] +M------------------VEST----------------------TLVNQTWWYNPTV-- +--------------------------------------------------DIHPHWAKFD +----------PIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLA +MSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRY +NVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCS +FDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKE +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRK---------AQAGASAEMKLAKISMVIITQFMLSWSPYAI +IALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLT +CCQFD------EKECE-DAN-DAEE-EVVASER----GGESRDAAQMKEMMAMMQKMQAQ +QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP +QGAPPQGVDNQAYQA +> 28== X70498 1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93] +M------------------GRDL-----------------------RDNETWWYNPSI-- +--------------------------------------------------VVHPHWREFD +----------QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLA +FSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRY +NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCS +FDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE +------------------------------------------------------------ +------------------------------------------------------------ +-----------------LRK---------AQAGANAEMRLAKISIVIVSQFLLSWSPYAV +VALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT +CCQFD------DKETE-DDK-DAET-EIPAGES--SDAAPSADAAQMKEMMAMMQKMQQQ +QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP----- +-AAPPQGVDNQAYQA +> 29== L21195 1 human serotonin 5-HT7 receptor protein <placenta and fetal bra +MM-----------------DVNSSGR-----PDLYGHLRS-FLLPEVGRGLPDLSPDG-- +----------GADPVAGSWAP---HLLS------------------EVTASPAPTWDAPP +DNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLA +LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY +LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS +QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- +-------FPRVEPDSVIALNG--------------------------------------- +-----------------------IVKLQKE-------------------VEECAN----- +-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL +LSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- +QCQYRNINRK-------LSAAGMHE-ALKLAER------PERPEFVL------------Q +NADY-------------------------------------------------------- +-------CRKKGHDS +> 30== L15228 1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93] +M----------------------------------------------------------- +--------------------P---HLLS--------GFL-------EVTASPAPTWDAPP +DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA +LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY +LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS +QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- +-------FPRVQPESVISLNG--------------------------------------- +-----------------------VVKLQKE-------------------VEECAN----- +-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL +LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL----- +QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q +NSDH-------------------------------------------------------- +-------CGKKGHDT +> 31=p A47425 serotonin receptor 5HT-7 - rat +M----------------------------------------------------------- +--------------------P---HLLS--------GFL-------EVTASPAPTWDAPP +DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA +LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY +LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS +QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG------- +-------FPRVQPESVISLNG--------------------------------------- +-----------------------VVKLQKE-------------------VEECAN----- +-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL +LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL----- +QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q +NSDH-------------------------------------------------------- +-------CGKKGHDT +> 32== M83181 1 human serotonin receptor <>[JBC267(11),7553-7562'92] +M------------------DVLSPG-------------------------------QG-- +------------------------NNTTSPPAPF-E---------------TGGNTTGIS +----------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA +VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY +WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS +KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADT +RHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC----------------- +-------------------------------ANGAVRQGDDGAALEVIEVHRVGNSKEHL +PLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI +VALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- +KCKFCRQ----------------------------------------------------- +------------------------------------------------------------ +--------------- +> 33=p A35181 serotonin receptor class 1A - rat +M------------------DVFSFG-------------------------------QG-- +------------------------NNTTASQEPF-G---------------TGGNVTSIS +----------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA +VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY +WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS +KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGT +SLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC----------------- +-------------------------------TNGAVRQGDDEATLEVIEVHRVGNSKEHL +PLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI +VALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII----- +KCKFCRR----------------------------------------------------- +------------------------------------------------------------ +--------------- +> 34== L06803 1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93] +M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV +TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT +----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA +VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY +WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS +QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT +EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN +ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- +-----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI +IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- +FGKYRRGHR--------------------------------------------------- +------------------------------------------------------------ +--------------- +> 35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail +M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV +TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT +----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA +VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY +WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS +QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT +EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN +ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK-- +-----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI +IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL----- +FGKYRRGHR--------------------------------------------------- +------------------------------------------------------------ +--------------- +> 36== X95604 1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi +M------------------EGAE-GQEELDWEALYLRLPL-------------------- +------------------------QNCSWNSTGWEPNW--------NVTVVPNTTWWQAS +-----APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLA +VADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRY +WAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVS +QDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGP +-------PP-----------------------------------------------VPAG +GALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANGLEAD +PPTTGYGAVAAAYYPSLVRRK------PKEAADSKRERKAAKTLAIITGAFVACWLPFFV +LAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL----- +CGRRVRRRRA-----------------------------PQ------------------- +------------------------------------------------------------ +---------------