diff test-data/mafft_auto_linsi.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_auto_linsi.aln	Wed Mar 20 07:34:52 2024 +0000
@@ -0,0 +1,504 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+M------------------NGTE-G------DNFYVPF----SNKTGLARSPYEYPQY--
+--------------------------------------------------YLAEPW----
+---------------KYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLA
+MANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERY
+IVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQCSCG
+PDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEKEVTRMVVLMVIGFLVCWVPYAS
+VAFYIFT---HQGS-DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----
+CC-----GKNPLGDDE-SGA-STSK-TEVSSVS-TSPVSPA-------------------
+------------------------------------------------------------
+---------------
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+M------------------NGTE-G------PNFYVPF----SNITGVVRSPFEQPQY--
+--------------------------------------------------YLAEPW----
+---------------QFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLA
+VADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERY
+VVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQCSCG
+IDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------TTQKAEKEVTRMVIIMVIFFLICWLPYAS
+VAMYIFT---HQGS-NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----
+CC-----GKNPLGDDE-ASA-TASK-TETSQVA-PA------------------------
+------------------------------------------------------------
+---------------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+M------------------NGTE-G------INFYVPM----SNKTGVVRSPFEYPQY--
+--------------------------------------------------YLAEPW----
+---------------KYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLA
+VADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERY
+IVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQCSCG
+PDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------TTQKAEKEVTRMVILMVLGFMLAWTPYAV
+VAFWIFT---NKGA-DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----
+CC-----GKNPFGDEDVSSTVSQSK-TEVSSVS-SSQVSPA-------------------
+------------------------------------------------------------
+---------------
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+M------------------NGTE-G------KNFYVPM----SNRTGLVRSPFEYPQY--
+--------------------------------------------------YLAEPW----
+---------------QFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLA
+VAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY
+IVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQCSCG
+PDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEREVTKMVILMVFGFLIAWTPYAT
+VAAWIFF---NKGA-DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----
+FC-----GKNPLGDDE-SSTVSTSK-TEVSSVS-PA------------------------
+------------------------------------------------------------
+---------------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+M------------------NGTE-G------NNFYVPL----SNRTGLVRSPFEYPQY--
+--------------------------------------------------YLAEPW----
+---------------QFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLA
+VAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERY
+IVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQCSCG
+PDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEREVTKMVILMVLGFLVAWTPYAT
+VAAWIFF---NKGA-AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----
+FC-----GKNPLGDEE-SSTVSTSK-TEVSSVS-PA------------------------
+------------------------------------------------------------
+---------------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+M------------------KQVP-EFH----EDFYIPIPL--DINNLSAYSPFLVPQD--
+--------------------------------------------------HLGNQG----
+---------------IFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLS
+IANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERW
+LVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQCSCG
+PDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEREVTKMVVVMVLGFLVCWAPYAS
+FSLWIVS---HRGE-EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMV-----
+C------GKN-IEEDE-AST-SSQV-TQVSSVA-PEK-----------------------
+------------------------------------------------------------
+---------------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+M------------------RKMS-E------EEFYL-------FKNISSVGPWDGPQY--
+--------------------------------------------------HIAPVW----
+---------------AFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVS
+FGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERY
+IVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQCSCG
+PDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------TTQKAEREVSRMVVVMVGSFCVCYVPYAA
+FAMYMVN---NRNH-GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMV-----
+C------GKA-MTDES-DTC-SSQK-TEVSTVS-STQVGPN-------------------
+------------------------------------------------------------
+---------------
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+--DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
+LVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG
+PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEKEVTRMVVVMVLAFC--------
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY--
+--------------------------------------------------HIAPRW----
+---------------VYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLA
+VADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
+MVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLKTSCG
+PDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEKEVTRMVVVMVLAFCFCWGPYAF
+FACFAAA---NPGY-PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-----
+-------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA-------------------
+------------------------------------------------------------
+---------------
+>    10== Z68193   1 human Red Opsin <>[]
+MAQQWSLQRLAGRHPQDSYEDSTQS------SIFTY-------TNSNSTRGPFEGPNY--
+--------------------------------------------------HIAPRW----
+---------------VYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLA
+VADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERW
+LVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLKTSCG
+PDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEKEVTRMVVVMIFAYCVCWGPYTF
+FACFAAA---NPGY-AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-----
+-------GKK-VDDGS-ELS-SASK-TEVSSVS---SVSPA-------------------
+------------------------------------------------------------
+---------------
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+MTEAWNVAVFAARRSRDD-DDTTRG------SVFTY-------TNTNNTRGPFEGPNY--
+--------------------------------------------------HIAPRW----
+---------------VYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLA
+FVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERW
+FVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLKTSCG
+PDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEREVSRMVVVMIVAFCICWGPYAS
+FVSFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-----
+-------GKK-VDDGS-EAS-TTSR-TEVSSVS-NSSVAPA-------------------
+------------------------------------------------------------
+---------------
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+MA-AWE-AAFAARRRHEE-EDTTRD------SVFTY-------TNSNNTRGPFEGPNY--
+--------------------------------------------------HIAPRW----
+---------------VYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLA
+VADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERW
+FVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLKTSCG
+PDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------STQKAEKEVSRMVVVMIVAYCFCWGPYTF
+FACFAAA---NPGY-AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-----
+-------GKK-VDDGS-EVS-T-SR-TEVSSVS-NSSVSPA-------------------
+------------------------------------------------------------
+---------------
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+-----------------------MS------SNSSQ-------APPNGTPGPFDGPQW--
+-------------------------------------------------PYQAPQS----
+---------------TYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLA
+VADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERY
+VVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLRTSCG
+PNWYTGGSN--NNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD-------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------------------------TTQRAEREVTRMVIVMVMAFLLCWLPYST
+FALVVAT---HKGI-IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----
+CCGYQ--PQR-TGKAS-PGT-PGPH-ADVTAAGLRNKVMPAHPV----------------
+------------------------------------------------------------
+---------------
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+M------------------ESGNVS------SSLF------------GNVSTALRPEA--
+-------------------------RLSA---E---TRLLGWNVPPEELRHIPEHWLTYP
+----------EPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLA
+FCDFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRF
+NVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYLTSCT
+FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVES
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS-------NVDKNKETAEIRIAKAAITICFLFFCSWTPYGV
+MSLIGAF---GDKT-LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWL--
+AL-----NEK-APESS-AVA-STST-TQEPQQT---------------------------
+TAA---------------------------------------------------------
+---------------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+M------------------EYHNVS------SVL-------------GNVSSVLRPDA--
+-------------------------RLSA---E---SRLLGWNVPPDELRHIPEHWLIYP
+----------EPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLA
+FCDFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRY
+NVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYLTSCT
+FDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS-------NVDKSKEAAEIRIAKAAITICFLFFASWTPYGV
+MSLIGAF---GDKT-LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWL--
+AI-----SEK-APESR-AAI-STST-TQEQQQT---------------------------
+TAA---------------------------------------------------------
+---------------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+M------------------EPLC------------------------NASEPPLRPEA--
+-------------------------R-SSGNGD---LQFLGWNVPPDQIQYIPEHWLTQL
+----------EPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLA
+VFDLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY
+NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS
+FDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVES
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV
+MSLIGAF---GDKS-LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWL--
+GV-----NEK-SGEIS-SAQ-STTT-QEQQQTT---------------------------
+AA----------------------------------------------------------
+---------------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+M------------------DALC------------------------NASEPPLRPEA--
+-------------------------RMSSGSDE---LQFLGWNVPPDQIQYIPEHWLTQL
+----------EPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLA
+VFDLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRY
+NVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYLTSCS
+FDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVES
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS-------NVDKSKETAEIRIAKAAITICFLFFVSWTPYGV
+MSLIGAF---GDKS-LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWL--
+GV-----NEK-SGEAS-SAQ-STTT-QEQTQQT---------------------------
+SAA---------------------------------------------------------
+---------------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+M------------------TNAT-------------------------------GPQMAY
+-------YG--------------AASMDFGYPE---GVSIVDFVRPEIKPYVHQHWYNYP
+----------PVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLA
+LSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRY
+NIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGILDSCS
+YDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVST
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------NEADAQRAEIRIAKTALVNVSLWFICWTPYAL
+ISLKGVM---GDTS-GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWF--
+CV-----HET-ETKSN-DDS-QSNS-TVAQDKA---------------------------
+------------------------------------------------------------
+---------------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+M------------------ANVT-------------------------------GPQMAF
+-------YG--------------SGAATFGYPE---GMTVADFVPDRVKHMVLDHWYNYP
+----------PVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLA
+LSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRY
+NIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGILDSCS
+YDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTN
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------NEAETQRAEIRIAKTALVNVSLWFICWTPYAA
+ITIQGLL---GNAE-GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWF--
+CV-----HEK-DPNDV-EEN-QSSN-TQTQEKS---------------------------
+------------------------------------------------------------
+---------------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+M------------------ESFA-------------------------VAAAQLGPHF--
+------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP
+----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
+ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
+QVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNLTSCG
+IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV
+INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
+VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA-------------------
+------------------------------------------------------------
+---------------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+M------------------ESFA-------------------------VAAAQLGPHF--
+------------------------APLS--------NGSVVDKVTPDMAHLISPYWNQFP
+----------AMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
+ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
+QVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNLTSCG
+IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SEDAEKSAEGKLAKVALVTITLWFMAWTPYLV
+INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
+VF-----GKV-DDGKS-SDA-QSQA-TASEAES------KA-------------------
+------------------------------------------------------------
+---------------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+M------------------DSFA-------------------------AVATQLGPQF--
+------------------------AAPS--------NGSVVDKVTPDMAHLISPYWDQFP
+----------AMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLA
+ISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRY
+QVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNLTSCG
+IDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SEDADKSAEGKLAKVALVTISLWFMAWTPYLV
+INCMGLF---KF-E-GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCC--
+VF-----GKV-DDGKS-SEA-QSQA-TTSEAES------KA-------------------
+------------------------------------------------------------
+---------------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+M------------------ERSH--------------------LPETPFDLAHSGPRF--
+------------------------QAQSSG------NGSVLDNVLPDMAHLVNPYWSRFA
+----------PMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
+FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRY
+NVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNLTACS
+IDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SEDCDKSAEGKLAKVALTTISLWFMAWTPYLV
+ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMC--
+VF-----GNT-DEPKP-DAP-ASDTETTSEADS------KA-------------------
+------------------------------------------------------------
+---------------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+M------------------ERSL--------------------LPEPPLAMALLGPRF--
+------------------------EAQTGG------NRSVLDNVLPDMAPLVNPHWSRFA
+----------PMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLA
+FSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRY
+NVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNLTACS
+IDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SEDCDKSAENKLAKVALTTISLWFMAWTPYLI
+ICYFGLF---KI-D-GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMC--
+VC-----GTT-DEPKP-DAP-PSDTETTSEAES------KD-------------------
+------------------------------------------------------------
+---------------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+M-------------------------------------------------IAVSGPSY--
+------------------------EAFSYGGQARFNNQTVVDKVPPDMLHLIDANWYQYP
+----------PLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLA
+ISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRY
+NVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNMTACG
+TDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVAS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRS--------SENQNTSAECKLAKVALMTISLWFMAWTPYLV
+INFSGIF---NL-V-KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSL--
+AC-----AA--EPSSD-AVS-TTSG-TTTVTDN------EK------------------S
+NA----------------------------------------------------------
+---------------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+M------------------ANQL---------------------------------SY--
+------------------------SSLGWPYQP---NASVVDTMPKEMLYMIHEHWYAFP
+----------PMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLA
+FSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRY
+NVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNLTSCT
+VDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVAS
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRA-------NADQQKQSAECRLAKVAMMTVGLWFMAWTPYLI
+ISWAGVF---SSGT-RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSL--
+AC-----GSG-ESGSD-VKS-EASA-TTTMEEK------PKIPEA---------------
+------------------------------------------------------------
+---------------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+M------------------VEST----------------------TLVNQTWWYNPTV--
+--------------------------------------------------DIHPHWAKFD
+----------PIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLA
+MSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRY
+NVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGILTSCS
+FDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKE
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRK---------AQAGASAEMKLAKISMVIITQFMLSWSPYAI
+IALLAQF---GPAE-WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLT
+CCQFD------EKECE-DAN-DAEE-EVVASER----GGESRDAAQMKEMMAMMQKMQAQ
+QAAYQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAP
+QGAPPQGVDNQAYQA
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+M------------------GRDL-----------------------RDNETWWYNPSI--
+--------------------------------------------------VVHPHWREFD
+----------QVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLA
+FSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRY
+NVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVLCNCS
+FDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKE
+------------------------------------------------------------
+------------------------------------------------------------
+-----------------LRK---------AQAGANAEMRLAKISIVIVSQFLLSWSPYAV
+VALLAQF---GPLE-WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLT
+CCQFD------DKETE-DDK-DAET-EIPAGES--SDAAPSADAAQMKEMMAMMQKMQQQ
+QAAYPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP-----
+-AAPPQGVDNQAYQA
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+MM-----------------DVNSSGR-----PDLYGHLRS-FLLPEVGRGLPDLSPDG--
+----------GADPVAGSWAP---HLLS------------------EVTASPAPTWDAPP
+DNASGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLA
+LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
+LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
+QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
+-------FPRVEPDSVIALNG---------------------------------------
+-----------------------IVKLQKE-------------------VEECAN-----
+-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
+LSTARPFICGTSCS-CIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----
+QCQYRNINRK-------LSAAGMHE-ALKLAER------PERPEFVL------------Q
+NADY--------------------------------------------------------
+-------CRKKGHDS
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+M-----------------------------------------------------------
+--------------------P---HLLS--------GFL-------EVTASPAPTWDAPP
+DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA
+LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
+LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
+QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
+-------FPRVQPESVISLNG---------------------------------------
+-----------------------VVKLQKE-------------------VEECAN-----
+-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
+LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----
+QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q
+NSDH--------------------------------------------------------
+-------CGKKGHDT
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+M-----------------------------------------------------------
+--------------------P---HLLS--------GFL-------EVTASPAPTWDAPP
+DNVSGCGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLA
+LADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRY
+LGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKVCLIS
+QDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG-------
+-------FPRVQPESVISLNG---------------------------------------
+-----------------------VVKLQKE-------------------VEECAN-----
+-------------LSRLLKHE------RKNISIFKREQKAATTLGIIVGAFTVCWLPFFL
+LSTARPFICGTSCS-CIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----
+QCQYRNINRK-------LSAAGMHE-ALKLAER------PERSEFVL------------Q
+NSDH--------------------------------------------------------
+-------CGKKGHDT
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+M------------------DVLSPG-------------------------------QG--
+------------------------NNTTSPPAPF-E---------------TGGNTTGIS
+----------DVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA
+VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY
+WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS
+KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADT
+RHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC-----------------
+-------------------------------ANGAVRQGDDGAALEVIEVHRVGNSKEHL
+PLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI
+VALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----
+KCKFCRQ-----------------------------------------------------
+------------------------------------------------------------
+---------------
+>    33=p A35181 serotonin receptor class 1A - rat
+M------------------DVFSFG-------------------------------QG--
+------------------------NNTTASQEPF-G---------------TGGNVTSIS
+----------DVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLA
+VTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRY
+WAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDACTIS
+KDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGT
+SLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC-----------------
+-------------------------------TNGAVRQGDDEATLEVIEVHRVGNSKEHL
+PLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFI
+VALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----
+KCKFCRR-----------------------------------------------------
+------------------------------------------------------------
+---------------
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV
+TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT
+----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA
+VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY
+WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS
+QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT
+EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN
+ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK--
+-----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI
+IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----
+FGKYRRGHR---------------------------------------------------
+------------------------------------------------------------
+---------------
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+M------------------ANFTFGDLALDVARMGGLASTPSGLRSTGLTTPGLSPTGLV
+TSDFNDSYGLTGQFINGSHSSRSRDNASANDT--------------SATNMTDDRYWSLT
+----------VYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLA
+VADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRY
+WAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIIS
+QDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKT
+EETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPEN
+ANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNGKK--
+-----------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFI
+IALIGPF---VDPE-GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----
+FGKYRRGHR---------------------------------------------------
+------------------------------------------------------------
+---------------
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+M------------------EGAE-GQEELDWEALYLRLPL--------------------
+------------------------QNCSWNSTGWEPNW--------NVTVVPNTTWWQAS
+-----APFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLA
+VADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRY
+WAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVS
+QDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARGGVGP
+-------PP-----------------------------------------------VPAG
+GALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANGLEAD
+PPTTGYGAVAAAYYPSLVRRK------PKEAADSKRERKAAKTLAIITGAFVACWLPFFV
+LAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL-----
+CGRRVRRRRA-----------------------------PQ-------------------
+------------------------------------------------------------
+---------------