Mercurial > repos > rnateam > mafft
diff test-data/mafft_custom_original.clustal.aln @ 15:bf28a8cff401 draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
| author | bgruening |
|---|---|
| date | Wed, 20 Mar 2024 07:34:52 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mafft_custom_original.clustal.aln Wed Mar 20 07:34:52 2024 +0000 @@ -0,0 +1,496 @@ +CLUSTAL format alignment by MAFFT G-INS-i (v7.520) + + +1== MN---------------------------------------------------------- +2== MN---------------------------------------------------------- +3== MN---------------------------------------------------------- +4=p MN---------------------------------------------------------- +5=p MN---------------------------------------------------------- +6== MK---------------------------------------------------------- +7== MR---------------------------------------------------------- +8=opsin, ------------------------------------------------------------ +9== MA------QQWS-LQRLAGRHPQDS--------------------------YED------ +10== MA------QQWS-LQRLAGRHPQDS--------------------------YED------ +11== MT------EAWNVAVFAARRSRDD----------------------------DD------ +12== MA-------AWE-AAFAARRRHEE----------------------------ED------ +13== MS---------------------------------------------------------- +14== MESGNVS----------------------------------------------------- +15== MEYHNVS----------------------------------------------------- +16== ME---------------------------------------------------------- +17== MD---------------------------------------------------------- +18== MT---------------------------------------------------------- +19== MA---------------------------------------------------------- +20== MESF-------------------------------------------------------- +21== MESF-------------------------------------------------------- +22== MDSF-------------------------------------------------------- +23== MERSHLP---------------------------------------------------ET +24== MERSLLP---------------------------------------------------EP +25== MI---------------------------------------------------------- +26== M----------------------------------------------------------- +27== MV---------------------------------------------------------- +28== MG---------------------------------------------------------- +29== MMDVN-----------SSGRPDLYGHLRSFLLPEVGRGLPDLSPDG------------GA +30== M----------------------------------------------------------- +31=p M----------------------------------------------------------- +32== MDVLS------------------------------------------------------- +33=p MDVFS------------------------------------------------------- +34== MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG +35=p MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG +36== ME---------------------------------------------------------- + + +1== ----GTEG--DNFY------------VPFSNKTG----------------------LARS +2== ----GTEG--PNFY------------VPFSNITG----------------------VVRS +3== ----GTEG--INFY------------VPMSNKTG----------------------VVRS +4=p ----GTEG--KNFY------------VPMSNRTG----------------------LVRS +5=p ----GTEG--NNFY------------VPLSNRTG----------------------LVRS +6== ----QVPEFHEDFY------IPIP--LDINNLSA------------------------YS +7== ----KMSE--EEFY------------L-FKNISS----------------------V--G +8=opsin, ------------------------------------------------------------ +9== ----STQS--SIFT------------YTNSNSTR-------------------------G +10== ----STQS--SIFT------------YTNSNSTR-------------------------G +11== ----TTRG--SVFT------------YTNTNNTR-------------------------G +12== ----TTRD--SVFT------------YTNSNNTR-------------------------G +13== ----SNSS------------------QAPPNGTP-------------------------G +14== SSLFGNVS--TALR-------------PEARLSA---E------TRLLGWNVPPEELRHI +15== SVL-GNVS--SVLR-------------PDARLSA---E------SRLLGWNVPPDELRHI +16== -PLCNASE--PPLR-------------PEAR-SSGNGD------LQFLGWNVPPDQIQYI +17== -ALCNASE--PPLR-------------PEARMSSGSDE------LQFLGWNVPPDQIQYI +18== ----NATG--PQMAY-----------YGAASMDFGYPE------GVSIVDFVRPEIKPYV +19== ----NVTG--PQMAF-----------YGSGAATFGYPE------GMTVADFVPDRVKHMV +20== AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI +21== AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI +22== AAVATQLG--PQFA----------------APS-----------NGSVVDKVTPDMAHLI +23== PFDLAHSG--PRFQ----------------AQSSG---------NGSVLDNVLPDMAHLV +24== PLAMALLG--PRFE----------------AQTGG---------NRSVLDNVLPDMAPLV +25== ----AVSG--PSYE----------------AFSYGGQARFN---NQTVVDKVPPDMLHLI +26== -----ANQ--LSYS----------------SLGWPYQP------NASVVDTMPKEMLYMI +27== ----ESTT--------------------LVNQTWWY--------NPTVD----------I +28== ----RDLR---------------------DNETWWY--------NPSIV----------V +29== DPVAGSWA--PHLL------------S---EVTASPAPTWDAPPDNASG----------- +30== ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG----------- +31=p ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG----------- +32== --------------------------PGQGNNTTSPPAPFETGGNTTGI----------- +33=p --------------------------FGQGNNTTASQEPFGTGGNVTSI----------- +34== QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T +35=p QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T +36== ----GAEG--QEELDWEALYLRLPLQNCSWNSTGWEPN-----WNVTVV----------P + + +1== PYEYPQY------YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYIL +2== PFEQPQY------YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYIL +3== PFEYPQY------YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYIL +4=p PFEYPQY------YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFIL +5=p PFEYPQY------YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFIL +6== PFLVPQD------HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYIL +7== PWDGPQY------HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL +8=opsin, ------------------------------------------------------------ +9== PFEGPNY------HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWIL +10== PFEGPNY------HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWIL +11== PFEGPNY------HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWIL +12== PFEGPNY------HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWIL +13== PFDGPQWP-----YQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYIL +14== PEHWLTY------PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV +15== PEHWLIY------PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILV +16== PEHWLTQ------LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFV +17== PEHWLTQ------LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFV +18== HQHWYNY------PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILV +19== LDHWYNY------PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLI +20== SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV +21== SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV +22== SPYWDQF------PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLV +23== NPYWSRF------APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLV +24== NPHWSRF------APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLV +25== DANWYQY------PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFV +26== HEHWYAF------PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLV +27== HPHWAKF------DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFI +28== HPHWREF------DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFI +29== ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLI +30== ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI +31=p ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI +32== -------------SDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI +33=p -------------SDVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI +34== DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI +35=p DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI +36== NTTWWQASAPFD-TPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLI + + +1== LNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLA +2== LNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLA +3== VNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLA +4=p VNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLA +5=p VNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLA +6== VNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVA +7== VNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLA +8=opsin, ------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS +9== VNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS +10== VNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS +11== VNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIIS +12== VNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIIS +13== VNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILA +14== INLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIA +15== INLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIA +16== LNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIG +17== LNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIG +18== VNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMIS +19== VNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMIS +20== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS +21== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS +22== INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS +23== LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIA +24== LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIA +25== INLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIA +26== VNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMIT +27== INLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMIS +28== INLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMIS +29== VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS +30== VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS +31=p VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS +32== GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA +33=p GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA +34== LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA +35=p LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA +36== LSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIA + . : : * : : + +1== IERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQ +2== IERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQ +3== IERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQ +4=p IERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQ +5=p IERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQ +6== FERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQ +7== FERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQ +8=opsin, WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK +9== WERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK +10== WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLK +11== WERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLK +12== WERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLK +13== LERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLR +14== YDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYL +15== YDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYL +16== YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL +17== YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL +18== FDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGIL +19== FDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGIL +20== LDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNL +21== LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNL +22== LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNL +23== FDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNL +24== FDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNL +25== FDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNM +26== LDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNL +27== IDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGIL +28== IDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVL +29== IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV +30== IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV +31=p IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV +32== LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA +33=p LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA +34== MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT +35=p MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT +36== LDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLR + :*: : : . + +1== CSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA--- +2== CSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA--- +3== CSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA--- +4=p CSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA--- +5=p CSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA--- +6== CSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA--- +7== CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA--- +8=opsin, TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE--- +9== TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE--- +10== TSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE--- +11== TSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE--- +12== TSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE--- +13== TSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD--- +14== TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM +15== TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM +16== TSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKM +17== TSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKM +18== DSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKM +19== DSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKM +20== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM +21== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM +22== TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM +23== TACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKM +24== TACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKM +25== TACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM +26== TSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKM +27== TSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRL +28== CNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL +29== CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG--- +30== CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG--- +31=p CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG--- +32== CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKT +33=p CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKK +34== CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA +35=p CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA +36== CVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARG + : * : * : + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ------------------------------------------------------------ +14== NVE------------------SLRS----------------------------------- +15== NVD------------------SLRS----------------------------------- +16== NVE------------------SLRS----------------------------------- +17== NVE------------------SLRS----------------------------------- +18== NVS------------------TLRS----------------------------------- +19== NVT------------------NLRS----------------------------------- +20== NVK------------------SLRS----------------------------------- +21== NVK------------------SLRS----------------------------------- +22== NVK------------------SLRS----------------------------------- +23== NVK------------------SLRS----------------------------------- +24== NVK------------------SLRS----------------------------------- +25== NVA------------------SLRS----------------------------------- +26== NVA------------------SLRA----------------------------------- +27== NAK------------------ELRK----------------------------------- +28== NAK------------------ELRK----------------------------------- +29== -----------FPRVEPDSVIALNG----------------------------------- +30== -----------FPRVQPESVISLNG----------------------------------- +31=p -----------FPRVQPESVISLNG----------------------------------- +32== GADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC------------- +33=p GAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC------------- +34== RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK +35=p RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK +36== GVG---------------------------------------------PPP--------- + + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ------------------------------------------------------------ +14== ------------------------------------------------------------ +15== ------------------------------------------------------------ +16== ------------------------------------------------------------ +17== ------------------------------------------------------------ +18== ------------------------------------------------------------ +19== ------------------------------------------------------------ +20== ------------------------------------------------------------ +21== ------------------------------------------------------------ +22== ------------------------------------------------------------ +23== ------------------------------------------------------------ +24== ------------------------------------------------------------ +25== ------------------------------------------------------------ +26== ------------------------------------------------------------ +27== ------------------------------------------------------------ +28== ------------------------------------------------------------ +29== ---------------------------IVKLQKE-------------------VEECAN- +30== ---------------------------VVKLQKE-------------------VEECAN- +31=p ---------------------------VVKLQKE-------------------VEECAN- +32== -----------------------------------ANGAVRQGDDGAALEVIEVHRVGNS +33=p -----------------------------------TNGAVRQGDDEATLEVIEVHRVGNS +34== LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG +35=p LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG +36== VPAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANG + + +1== -----------------------------------STQKAEKEVTRMVVLMVIGFLVCWV +2== -----------------------------------TTQKAEKEVTRMVIIMVIFFLICWL +3== -----------------------------------TTQKAEKEVTRMVILMVLGFMLAWT +4=p -----------------------------------STQKAEREVTKMVILMVFGFLIAWT +5=p -----------------------------------STQKAEREVTKMVILMVLGFLVAWT +6== -----------------------------------STQKAEREVTKMVVVMVLGFLVCWA +7== -----------------------------------TTQKAEREVSRMVVVMVGSFCVCYV +8=opsin, -----------------------------------STQKAEKEVTRMVVVMVLAFC---- +9== -----------------------------------STQKAEKEVTRMVVVMVLAFCFCWG +10== -----------------------------------STQKAEKEVTRMVVVMIFAYCVCWG +11== -----------------------------------STQKAEREVSRMVVVMIVAFCICWG +12== -----------------------------------STQKAEKEVSRMVVVMIVAYCFCWG +13== -----------------------------------TTQRAEREVTRMVIVMVMAFLLCWL +14== -------------------------------NVDKNKETAEIRIAKAAITICFLFFCSWT +15== -------------------------------NVDKSKEAAEIRIAKAAITICFLFFASWT +16== -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT +17== -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT +18== --------------------------------NEADAQRAEIRIAKTALVNVSLWFICWT +19== --------------------------------NEAETQRAEIRIAKTALVNVSLWFICWT +20== --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT +21== --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT +22== --------------------------------SEDADKSAEGKLAKVALVTISLWFMAWT +23== --------------------------------SEDCDKSAEGKLAKVALTTISLWFMAWT +24== --------------------------------SEDCDKSAENKLAKVALTTISLWFMAWT +25== --------------------------------SENQNTSAECKLAKVALMTISLWFMAWT +26== -------------------------------NADQQKQSAECRLAKVAMMTVGLWFMAWT +27== ---------------------------------AQAGASAEMKLAKISMVIITQFMLSWS +28== ---------------------------------AQAGANAEMRLAKISIVIVSQFLLSWS +29== -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL +30== -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL +31=p -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL +32== KEHLPLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL +33=p KEHLPLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL +34== KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL +35=p KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL +36== LEADPPTTGYGAVAAAYYPSLVRR------KPKEAADSKRERKAAKTLAIITGAFVACWL + * . : + +1== PYASVAFYIFT---HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLC +2== PYASVAMYIFT---HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLC +3== PYAVVAFWIFT---NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC +4=p PYATVAAWIFF---NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF +5=p PYATVAAWIFF---NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF +6== PYASFSLWIVS---HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMVC +7== PYAAFAMYMVN---NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC +8=opsin, ------------------------------------------------------------ +9== PYAFFACFAAA---NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF- +10== PYTFFACFAAA---NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF- +11== PYASFVSFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF- +12== PYTFFACFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF- +13== PYSTFALVVAT---HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLC +14== PYGVMSLIGAF---GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCP +15== PYGVMSLIGAF---GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCP +16== PYGVMSLIGAF---GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP +17== PYGVMSLIGAF---GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCP +18== PYALISLKGVM---GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLP +19== PYAAITIQGLL---GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLP +20== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP +21== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP +22== PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP +23== PYLVICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP +24== PYLIICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP +25== PYLVINFSGIF---NL-VK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP +26== PYLIISWAGVF---SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP +27== PYAIIALLAQF---GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFP +28== PYAVVALLAQF---GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP +29== PFFLLSTARPFICGTSCSC-IPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ +30== PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQ +31=p PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ +32== PFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK +33=p PFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK +34== PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF +35=p PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF +36== PFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLC + + +1== C-GKNPLGDDE-SGA-STSKTEVSSVS-TSPV---------------------------- +2== C-GKNPLGDDE-ASA-TASKTE------TSQV---------------------------- +3== C-GKNPFGDEDVSSTVSQSKTEVSSVS-SSQV---------------------------- +4=p C-GKNPLGDDE-SSTVSTSKTEVSS------V---------------------------- +5=p C-GKNPLGDEE-SSTVSTSKTEVSS------V---------------------------- +6== --GKN-IEEDE-AST-SSQVTQVSSVA-PEK----------------------------- +7== --GKA-MTDES-DTC-SSQKTEVSTVS-STQV---------------------------- +8=opsin, ------------------------------------------------------------ +9== --GKK-VDDGS-ELS-SASKTEVSSV---SSV---------------------------- +10== --GKK-VDDGS-ELS-SASKTEVSSV---SSV---------------------------- +11== --GKK-VDDGS-EAS-TTSRTEVSSVS-NSSV---------------------------- +12== --GKK-VDDGS-EVS--TSRTEVSSVS-NSSV---------------------------- +13== C-GYQPQRTGKASPGTPGPHADVTAAGLRNKV---------------------------- +14== WLALNEKAPES-SAV-ASTST---TQE-PQQT---------------------------- +15== WLAISEKAPES-RAA-ISTST---TQE-QQQT---------------------------- +16== WLGVNEKSGEI-SSA-QSTTT---QEQ--QQT---------------------------- +17== WLGVNEKSGEA-SSA-QSTTT---QEQ-TQQT---------------------------- +18== WFCVHETETKS-NDD-SQSNS---TVA-Q------------------------------- +19== WFCVHEKDPND-VEE-NQSSN---TQT-Q------------------------------- +20== CCVFGKVDDGK-SSD-AQSQA-TASEA-E------------------------------- +21== CCVFGKVDDGK-SSD-AQSQA-TASEA-E------------------------------- +22== CCVFGKVDDGK-SSE-AQSQA-TTSEA-E------------------------------- +23== MCVFGNTDEPK-PDA-PASDTETTSEA-D------------------------------- +24== MCVCGTTDEPK-PDA-PPSDTETTSEA-E------------------------------- +25== SLACA-AEPSS-DAV-STTSG-TTTVT-DNEK---------------------------- +26== SLACGSGESGS-DVK-SEASA-TTTME-EKPK---------------------------- +27== WLLTCCQFDEK-ECE-DANDAEEEVVA-SER---GGESRDAAQMKEMMAMMQKMQAQQAA +28== WVLTCCQFDDK-ETE-DDKDAETEIPA-GESSD-AAPSADAAQMKEMMAMMQKMQQQQAA +29== --CQYRNINRKLSAA-GMHEALKLAER-PERPEFVLQNADYCRKKG-------------- +30== --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG-------------- +31=p --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG-------------- +32== --CKFCR----------------------------------------------------- +33=p --CKFCR----------------------------------------------------- +34== --GKYRR----------------------------------------------------- +35=p --GKYRR----------------------------------------------------- +36== --GRRVR-RRR------------------------------------------------- + + +1== ------------------------------------------------------------ +2== ------------------------------------------------------------ +3== ------------------------------------------------------------ +4=p ------------------------------------------------------------ +5=p ------------------------------------------------------------ +6== ------------------------------------------------------------ +7== ------------------------------------------------------------ +8=opsin, ------------------------------------------------------------ +9== ------------------------------------------------------------ +10== ------------------------------------------------------------ +11== ------------------------------------------------------------ +12== ------------------------------------------------------------ +13== ---------------------------------------MP------------------- +14== ------------------------------------------------------------ +15== ------------------------------------------------------------ +16== ------------------------------------------------------------ +17== ------------------------------------------------------------ +18== ------------------------------------------------------------ +19== ------------------------------------------------------------ +20== ------------------------------------------------------------ +21== ------------------------------------------------------------ +22== ------------------------------------------------------------ +23== ------------------------------------------------------------ +24== ------------------------------------------------------------ +25== ------------------------------------------------------------ +26== ------------------------------------------------------------ +27== YQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGA +28== YPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AA +29== ------------------------------------------------------------ +30== ------------------------------------------------------------ +31=p ------------------------------------------------------------ +32== ------------------------------------------------------------ +33=p ------------------------------------------------------------ +34== ------------------------------------------------------------ +35=p ------------------------------------------------------------ +36== ------------------------------------------------------------ + + +1== ---------SPA +2== ---------APA +3== ---------SPA +4=p ---------SPA +5=p ---------SPA +6== ------------ +7== ---------GPN +8=opsin, ------------ +9== ---------SPA +10== ---------SPA +11== ---------APA +12== ---------SPA +13== --------AHPV +14== ---------TAA +15== ---------TAA +16== ---------TAA +17== ---------SAA +18== ---------DKA +19== ---------EKS +20== ---------SKA +21== ---------SKA +22== ---------SKA +23== ---------SKA +24== ---------SKD +25== ---------SNA +26== --------IPEA +27== PPQGVDNQAYQA +28== PPQGVDNQAYQA +29== ---------HDS +30== ---------HDT +31=p ---------HDT +32== -----------Q +33=p -----------R +34== ---------GHR +35=p ---------GHR +36== ---------APQ +