diff test-data/mafft_custom_original.clustal.aln @ 15:bf28a8cff401 draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af
author bgruening
date Wed, 20 Mar 2024 07:34:52 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_custom_original.clustal.aln	Wed Mar 20 07:34:52 2024 +0000
@@ -0,0 +1,496 @@
+CLUSTAL format alignment by MAFFT G-INS-i (v7.520)
+
+
+1==             MN----------------------------------------------------------
+2==             MN----------------------------------------------------------
+3==             MN----------------------------------------------------------
+4=p             MN----------------------------------------------------------
+5=p             MN----------------------------------------------------------
+6==             MK----------------------------------------------------------
+7==             MR----------------------------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             MA------QQWS-LQRLAGRHPQDS--------------------------YED------
+10==            MA------QQWS-LQRLAGRHPQDS--------------------------YED------
+11==            MT------EAWNVAVFAARRSRDD----------------------------DD------
+12==            MA-------AWE-AAFAARRRHEE----------------------------ED------
+13==            MS----------------------------------------------------------
+14==            MESGNVS-----------------------------------------------------
+15==            MEYHNVS-----------------------------------------------------
+16==            ME----------------------------------------------------------
+17==            MD----------------------------------------------------------
+18==            MT----------------------------------------------------------
+19==            MA----------------------------------------------------------
+20==            MESF--------------------------------------------------------
+21==            MESF--------------------------------------------------------
+22==            MDSF--------------------------------------------------------
+23==            MERSHLP---------------------------------------------------ET
+24==            MERSLLP---------------------------------------------------EP
+25==            MI----------------------------------------------------------
+26==            M-----------------------------------------------------------
+27==            MV----------------------------------------------------------
+28==            MG----------------------------------------------------------
+29==            MMDVN-----------SSGRPDLYGHLRSFLLPEVGRGLPDLSPDG------------GA
+30==            M-----------------------------------------------------------
+31=p            M-----------------------------------------------------------
+32==            MDVLS-------------------------------------------------------
+33=p            MDVFS-------------------------------------------------------
+34==            MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
+35=p            MANFTFGDLALD-VARMGGLASTPSGLRS-----TGLTTPGLSPTGLVTSDFNDSYGLTG
+36==            ME----------------------------------------------------------
+                                                                            
+
+1==             ----GTEG--DNFY------------VPFSNKTG----------------------LARS
+2==             ----GTEG--PNFY------------VPFSNITG----------------------VVRS
+3==             ----GTEG--INFY------------VPMSNKTG----------------------VVRS
+4=p             ----GTEG--KNFY------------VPMSNRTG----------------------LVRS
+5=p             ----GTEG--NNFY------------VPLSNRTG----------------------LVRS
+6==             ----QVPEFHEDFY------IPIP--LDINNLSA------------------------YS
+7==             ----KMSE--EEFY------------L-FKNISS----------------------V--G
+8=opsin,        ------------------------------------------------------------
+9==             ----STQS--SIFT------------YTNSNSTR-------------------------G
+10==            ----STQS--SIFT------------YTNSNSTR-------------------------G
+11==            ----TTRG--SVFT------------YTNTNNTR-------------------------G
+12==            ----TTRD--SVFT------------YTNSNNTR-------------------------G
+13==            ----SNSS------------------QAPPNGTP-------------------------G
+14==            SSLFGNVS--TALR-------------PEARLSA---E------TRLLGWNVPPEELRHI
+15==            SVL-GNVS--SVLR-------------PDARLSA---E------SRLLGWNVPPDELRHI
+16==            -PLCNASE--PPLR-------------PEAR-SSGNGD------LQFLGWNVPPDQIQYI
+17==            -ALCNASE--PPLR-------------PEARMSSGSDE------LQFLGWNVPPDQIQYI
+18==            ----NATG--PQMAY-----------YGAASMDFGYPE------GVSIVDFVRPEIKPYV
+19==            ----NVTG--PQMAF-----------YGSGAATFGYPE------GMTVADFVPDRVKHMV
+20==            AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
+21==            AVAAAQLG--PHFA----------------PLS-----------NGSVVDKVTPDMAHLI
+22==            AAVATQLG--PQFA----------------APS-----------NGSVVDKVTPDMAHLI
+23==            PFDLAHSG--PRFQ----------------AQSSG---------NGSVLDNVLPDMAHLV
+24==            PLAMALLG--PRFE----------------AQTGG---------NRSVLDNVLPDMAPLV
+25==            ----AVSG--PSYE----------------AFSYGGQARFN---NQTVVDKVPPDMLHLI
+26==            -----ANQ--LSYS----------------SLGWPYQP------NASVVDTMPKEMLYMI
+27==            ----ESTT--------------------LVNQTWWY--------NPTVD----------I
+28==            ----RDLR---------------------DNETWWY--------NPSIV----------V
+29==            DPVAGSWA--PHLL------------S---EVTASPAPTWDAPPDNASG-----------
+30==            ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
+31=p            ----------PHLL------------SGFLEVTASPAPTWDAPPDNVSG-----------
+32==            --------------------------PGQGNNTTSPPAPFETGGNTTGI-----------
+33=p            --------------------------FGQGNNTTASQEPFGTGGNVTSI-----------
+34==            QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
+35=p            QFINGSHS--SRSRD-----------NASANDT-----------SATNM----------T
+36==            ----GAEG--QEELDWEALYLRLPLQNCSWNSTGWEPN-----WNVTVV----------P
+                                                                            
+
+1==             PYEYPQY------YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYIL
+2==             PFEQPQY------YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYIL
+3==             PFEYPQY------YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYIL
+4=p             PFEYPQY------YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFIL
+5=p             PFEYPQY------YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFIL
+6==             PFLVPQD------HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYIL
+7==             PWDGPQY------HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYIL
+8=opsin,        ------------------------------------------------------------
+9==             PFEGPNY------HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWIL
+10==            PFEGPNY------HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWIL
+11==            PFEGPNY------HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWIL
+12==            PFEGPNY------HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWIL
+13==            PFDGPQWP-----YQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYIL
+14==            PEHWLTY------PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILV
+15==            PEHWLIY------PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILV
+16==            PEHWLTQ------LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFV
+17==            PEHWLTQ------LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFV
+18==            HQHWYNY------PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILV
+19==            LDHWYNY------PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLI
+20==            SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
+21==            SPYWNQF------PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLV
+22==            SPYWDQF------PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLV
+23==            NPYWSRF------APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLV
+24==            NPHWSRF------APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLV
+25==            DANWYQY------PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFV
+26==            HEHWYAF------PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLV
+27==            HPHWAKF------DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFI
+28==            HPHWREF------DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFI
+29==            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLI
+30==            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
+31=p            ---------CGEQINYGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLI
+32==            -------------SDVTVSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
+33=p            -------------SDVTFSYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLI
+34==            DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
+35=p            DDRYWSL------TVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLI
+36==            NTTWWQASAPFD-TPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLI
+                                                                            
+
+1==             LNLAMANLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLA
+2==             LNLAVADLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLA
+3==             VNLAVADLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLA
+4=p             VNLAVAGTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLA
+5=p             VNLAVAGAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLA
+6==             VNLSIANLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVA
+7==             VNVSFGGFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLA
+8=opsin,        ------DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
+9==             VNLAVADLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
+10==            VNLAVADLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIIS
+11==            VNLAFVDLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIIS
+12==            VNLAVADLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIIS
+13==            VNLAVADLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILA
+14==            INLAFCDFMMM-VK-TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIA
+15==            INLAFCDFMMM-IK-TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIA
+16==            LNLAVFDLIMC-LK-APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIG
+17==            LNLAVFDLIMC-LK-APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIG
+18==            VNLALSDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMIS
+19==            VNLALSDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMIS
+20==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
+21==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
+22==            INLAISDFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMIS
+23==            LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIA
+24==            LNLAFSDFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIA
+25==            INLAISNFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIA
+26==            VNLAFSDFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMIT
+27==            INLAMSDLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMIS
+28==            INLAFSDFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMIS
+29==            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
+30==            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
+31=p            VSLALADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVIS
+32==            GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
+33=p            GSLAVTDLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIA
+34==            LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
+35=p            LSLAVADLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIA
+36==            LSLAVADLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIA
+                      .                     :   :    * :                  : 
+
+1==             IERYIVICKPMGNF-RFGNTHAIMGVAFTWIMALAC-AAPPLVG-WS-----RYIPEGMQ
+2==             IERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALAC-AAPPLVG-WS-----RYIPEGMQ
+3==             IERYIVVCKPMGNF-RFSATHAMMGIAFTWVMAFSC-AAPPLFG-WS-----RYMPEGMQ
+4=p             IERYIVVCKPMGSF-KFSSSHAFAGIAFTWVMALAC-AAPPLFG-WS-----RYIPEGMQ
+5=p             IERYIVVCKPMGSF-KFSSTHASAGIAFTWVMAMAC-AAPPLVG-WS-----RYIPEGIQ
+6==             FERWLVICKPLGNF-TFKTPHAIAGCILPWISALAA-SLPPLFG-WS-----RYIPEGLQ
+7==             FERYIVICKPFGNF-RFSSKHALTVVLATWTIGIGV-SIPPFFG-WS-----RFIPEGLQ
+8=opsin,        WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
+9==             WERWMVVCKPFGNV-RFDAKLAIVGIAFSWIWAAVW-TAPPIFG-WS-----RYWPHGLK
+10==            WERWLVVCKPFGNV-RFDAKLAIVGIAFSWIWSAVW-TAPPIFG-WS-----RYWPHGLK
+11==            WERWFVVCKPFGNI-KFDSKLAIIGIVFSWVWAWGW-SAPPIFG-WS-----RYWPHGLK
+12==            WERWFVVCKPFGNI-KFDGKLAVAGILFSWLWSCAW-TAPPIFG-WS-----RYWPHGLK
+13==            LERYVVVCKPLGDF-QFQRRHAVSGCAFTWGWALLW-SAPPLLG-WS-----SYVPEGLR
+14==            YDRFNVITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETWG-----RFVPEGYL
+15==            YDRYNVITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESWG-----RFVPEGYL
+16==            YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
+17==            YDRYNVITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFWD-----RFVPEGYL
+18==            FDRYNIICNGFNGP-KLTTGKAVVFALISWVIAIGC-ALPPFFG-WG-----NYILEGIL
+19==            FDRYNIICNGFNGP-KLTQGKATFMCGLAWVISVGW-SLPPFFG-WG-----SYTLEGIL
+20==            LDRYQVIVKGMAGR-PMTIPLALGKM---------------------------YVPEGNL
+21==            LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSSIW-CLAPAFG-WS-----RYVPEGNL
+22==            LDRYQVIVKGMAGR-PMTIPLALGKIAYIWFMSTIWCCLAPVFG-WS-----RYVPEGNL
+23==            FDRYNVIVKGINGT-PMTIKTSIMKILFIWMMAVFW-TVMPLIG-WS-----AYVPEGNL
+24==            FDRYNVIVKGINGT-PMTIKTSIMKIAFIWMMAVFW-TIMPLIG-WS-----SYVPEGNL
+25==            FDRYNVIVKGLSGK-PLSINGALIRIIAIWLFSLGW-TIAPMFG-WN-----RYVPEGNM
+26==            LDRYNVIVRGMAAA-PLTHKKATLLLLFVWIWSGGW-TILPFFG-WS-----RYVPEGNL
+27==            IDRYNVIGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-WG-----AYVPEGIL
+28==            IDRYNVIGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-WG-----AYTLEGVL
+29==            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
+30==            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
+31=p            IDRYLGITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-WA-----QNVNDDKV
+32==            LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
+33=p            LDRYWAITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTP---EDRSDPDA
+34==            MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
+35=p            MDRYWAVTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGT
+36==            LDRYWAVTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLR
+                 :*:  :   :                                             .   
+
+1==             CSCGPDYYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQESA---
+2==             CSCGIDYYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQESA---
+3==             CSCGPDYYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQESA---
+4=p             CSCGPDYYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQDSA---
+5=p             CSCGPDYYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQDSA---
+6==             CSCGPDWYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQADSA---
+7==             CSCGPDWYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQESA---
+8=opsin,        TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
+9==             TSCGPDVFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKESE---
+10==            TSCGPDVFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKESE---
+11==            TSCGPDVFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKESE---
+12==            TSCGPDVFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKESE---
+13==            TSCGPNWYTGGS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKEAD---
+14==            TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
+15==            TSCTFDYLTDN--FDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKM
+16==            TSCSFDYLSDN--FDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKM
+17==            TSCSFDYLSDN--FDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKM
+18==            DSCSYDYLTQD--FNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKM
+19==            DSCSYDYFTRD--MNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKM
+20==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
+21==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
+22==            TSCGIDYLERD--WNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKM
+23==            TACSIDYMTRM--WNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKM
+24==            TACSIDYMTRQ--WNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKM
+25==            TACGTDYFNRG--LLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKM
+26==            TSCTVDYLTKD--WSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKM
+27==            TSCSFDYLSTD--PSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRL
+28==            CNCSFDYISRD--STTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRL
+29==            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
+30==            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
+31=p            CLISQDF----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFPG---
+32==            CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKT
+33=p            CTISKDH----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKK
+34==            CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
+35=p            CIISQDK----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKA
+36==            CVVSQDV----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGATARG
+                     :                        *   :   *  :                  
+
+1==             ------------------------------------------------------------
+2==             ------------------------------------------------------------
+3==             ------------------------------------------------------------
+4=p             ------------------------------------------------------------
+5=p             ------------------------------------------------------------
+6==             ------------------------------------------------------------
+7==             ------------------------------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             ------------------------------------------------------------
+10==            ------------------------------------------------------------
+11==            ------------------------------------------------------------
+12==            ------------------------------------------------------------
+13==            ------------------------------------------------------------
+14==            NVE------------------SLRS-----------------------------------
+15==            NVD------------------SLRS-----------------------------------
+16==            NVE------------------SLRS-----------------------------------
+17==            NVE------------------SLRS-----------------------------------
+18==            NVS------------------TLRS-----------------------------------
+19==            NVT------------------NLRS-----------------------------------
+20==            NVK------------------SLRS-----------------------------------
+21==            NVK------------------SLRS-----------------------------------
+22==            NVK------------------SLRS-----------------------------------
+23==            NVK------------------SLRS-----------------------------------
+24==            NVK------------------SLRS-----------------------------------
+25==            NVA------------------SLRS-----------------------------------
+26==            NVA------------------SLRA-----------------------------------
+27==            NAK------------------ELRK-----------------------------------
+28==            NAK------------------ELRK-----------------------------------
+29==            -----------FPRVEPDSVIALNG-----------------------------------
+30==            -----------FPRVQPESVISLNG-----------------------------------
+31=p            -----------FPRVQPESVISLNG-----------------------------------
+32==            GADTRHGASPAPQPKK-----SVNGE--SGSRNWRLGVESKAGGALC-------------
+33=p            GAGTSLGTSSAPPPKK-----SLNGQ--PGSGDWRRCAENRAVGTPC-------------
+34==            RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
+35=p            RLKTEETTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKK
+36==            GVG---------------------------------------------PPP---------
+                                                                            
+
+1==             ------------------------------------------------------------
+2==             ------------------------------------------------------------
+3==             ------------------------------------------------------------
+4=p             ------------------------------------------------------------
+5=p             ------------------------------------------------------------
+6==             ------------------------------------------------------------
+7==             ------------------------------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             ------------------------------------------------------------
+10==            ------------------------------------------------------------
+11==            ------------------------------------------------------------
+12==            ------------------------------------------------------------
+13==            ------------------------------------------------------------
+14==            ------------------------------------------------------------
+15==            ------------------------------------------------------------
+16==            ------------------------------------------------------------
+17==            ------------------------------------------------------------
+18==            ------------------------------------------------------------
+19==            ------------------------------------------------------------
+20==            ------------------------------------------------------------
+21==            ------------------------------------------------------------
+22==            ------------------------------------------------------------
+23==            ------------------------------------------------------------
+24==            ------------------------------------------------------------
+25==            ------------------------------------------------------------
+26==            ------------------------------------------------------------
+27==            ------------------------------------------------------------
+28==            ------------------------------------------------------------
+29==            ---------------------------IVKLQKE-------------------VEECAN-
+30==            ---------------------------VVKLQKE-------------------VEECAN-
+31=p            ---------------------------VVKLQKE-------------------VEECAN-
+32==            -----------------------------------ANGAVRQGDDGAALEVIEVHRVGNS
+33=p            -----------------------------------TNGAVRQGDDEATLEVIEVHRVGNS
+34==            LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
+35=p            LPENANGVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAML-ERQCNNG
+36==            VPAGGALVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTSPE---KQSCANG
+                                                                            
+
+1==             -----------------------------------STQKAEKEVTRMVVLMVIGFLVCWV
+2==             -----------------------------------TTQKAEKEVTRMVIIMVIFFLICWL
+3==             -----------------------------------TTQKAEKEVTRMVILMVLGFMLAWT
+4=p             -----------------------------------STQKAEREVTKMVILMVFGFLIAWT
+5=p             -----------------------------------STQKAEREVTKMVILMVLGFLVAWT
+6==             -----------------------------------STQKAEREVTKMVVVMVLGFLVCWA
+7==             -----------------------------------TTQKAEREVSRMVVVMVGSFCVCYV
+8=opsin,        -----------------------------------STQKAEKEVTRMVVVMVLAFC----
+9==             -----------------------------------STQKAEKEVTRMVVVMVLAFCFCWG
+10==            -----------------------------------STQKAEKEVTRMVVVMIFAYCVCWG
+11==            -----------------------------------STQKAEREVSRMVVVMIVAFCICWG
+12==            -----------------------------------STQKAEKEVSRMVVVMIVAYCFCWG
+13==            -----------------------------------TTQRAEREVTRMVIVMVMAFLLCWL
+14==            -------------------------------NVDKNKETAEIRIAKAAITICFLFFCSWT
+15==            -------------------------------NVDKSKEAAEIRIAKAAITICFLFFASWT
+16==            -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
+17==            -------------------------------NVDKSKETAEIRIAKAAITICFLFFVSWT
+18==            --------------------------------NEADAQRAEIRIAKTALVNVSLWFICWT
+19==            --------------------------------NEAETQRAEIRIAKTALVNVSLWFICWT
+20==            --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
+21==            --------------------------------SEDAEKSAEGKLAKVALVTITLWFMAWT
+22==            --------------------------------SEDADKSAEGKLAKVALVTISLWFMAWT
+23==            --------------------------------SEDCDKSAEGKLAKVALTTISLWFMAWT
+24==            --------------------------------SEDCDKSAENKLAKVALTTISLWFMAWT
+25==            --------------------------------SENQNTSAECKLAKVALMTISLWFMAWT
+26==            -------------------------------NADQQKQSAECRLAKVAMMTVGLWFMAWT
+27==            ---------------------------------AQAGASAEMKLAKISMVIITQFMLSWS
+28==            ---------------------------------AQAGANAEMRLAKISIVIVSQFLLSWS
+29==            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
+30==            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
+31=p            -----------------LSRLLKH------ERKNISIFKREQKAATTLGIIVGAFTVCWL
+32==            KEHLPLPSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
+33=p            KEHLPLPSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWL
+34==            KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
+35=p            KK-------------------ISSNDTPYSRTREKLELKRERKAARTLAIITGAFLICWL
+36==            LEADPPTTGYGAVAAAYYPSLVRR------KPKEAADSKRERKAAKTLAIITGAFVACWL
+                                                        * .           :     
+
+1==             PYASVAFYIFT---HQGSD-FGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLC
+2==             PYASVAMYIFT---HQGSN-FGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLC
+3==             PYAVVAFWIFT---NKGAD-FTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTIC
+4=p             PYATVAAWIFF---NKGAD-FSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIF
+5=p             PYATVAAWIFF---NKGAA-FSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLF
+6==             PYASFSLWIVS---HRGEE-FDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMMKMVC
+7==             PYAAFAMYMVN---NRNHG-LDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIMKMVC
+8=opsin,        ------------------------------------------------------------
+9==             PYAFFACFAAA---NPGYP-FHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCILQLF-
+10==            PYTFFACFAAA---NPGYA-FHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCILQLF-
+11==            PYASFVSFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIMQLF-
+12==            PYTFFACFAAA---NPGYA-FHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCILQLF-
+13==            PYSTFALVVAT---HKGII-IQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLLEMLC
+14==            PYGVMSLIGAF---GDKTL-LTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCP
+15==            PYGVMSLIGAF---GDKTL-LTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCP
+16==            PYGVMSLIGAF---GDKSL-LTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCP
+17==            PYGVMSLIGAF---GDKSL-LTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCP
+18==            PYALISLKGVM---GDTSG-ITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLP
+19==            PYAAITIQGLL---GNAEG-ITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLP
+20==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
+21==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
+22==            PYLVINCMGLF---KF-EG-LTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCP
+23==            PYLVICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP
+24==            PYLIICYFGLF---KI-DG-LTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP
+25==            PYLVINFSGIF---NL-VK-ISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP
+26==            PYLIISWAGVF---SSGTR-LTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP
+27==            PYAIIALLAQF---GPAEW-VTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFP
+28==            PYAVVALLAQF---GPLEW-VTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP
+29==            PFFLLSTARPFICGTSCSC-IPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
+30==            PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQ
+31=p            PFFLLSTARPFICGTSCSC-IPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQ
+32==            PFFIVALVLPF---CESSCHMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
+33=p            PFFIVALVLPF---CESSCHMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIK
+34==            PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
+35=p            PFFIIALIGPF---VDPEG-IPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILF
+36==            PFFVLAILVPT---CDCE--VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLC
+                                                                            
+
+1==             C-GKNPLGDDE-SGA-STSKTEVSSVS-TSPV----------------------------
+2==             C-GKNPLGDDE-ASA-TASKTE------TSQV----------------------------
+3==             C-GKNPFGDEDVSSTVSQSKTEVSSVS-SSQV----------------------------
+4=p             C-GKNPLGDDE-SSTVSTSKTEVSS------V----------------------------
+5=p             C-GKNPLGDEE-SSTVSTSKTEVSS------V----------------------------
+6==             --GKN-IEEDE-AST-SSQVTQVSSVA-PEK-----------------------------
+7==             --GKA-MTDES-DTC-SSQKTEVSTVS-STQV----------------------------
+8=opsin,        ------------------------------------------------------------
+9==             --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
+10==            --GKK-VDDGS-ELS-SASKTEVSSV---SSV----------------------------
+11==            --GKK-VDDGS-EAS-TTSRTEVSSVS-NSSV----------------------------
+12==            --GKK-VDDGS-EVS--TSRTEVSSVS-NSSV----------------------------
+13==            C-GYQPQRTGKASPGTPGPHADVTAAGLRNKV----------------------------
+14==            WLALNEKAPES-SAV-ASTST---TQE-PQQT----------------------------
+15==            WLAISEKAPES-RAA-ISTST---TQE-QQQT----------------------------
+16==            WLGVNEKSGEI-SSA-QSTTT---QEQ--QQT----------------------------
+17==            WLGVNEKSGEA-SSA-QSTTT---QEQ-TQQT----------------------------
+18==            WFCVHETETKS-NDD-SQSNS---TVA-Q-------------------------------
+19==            WFCVHEKDPND-VEE-NQSSN---TQT-Q-------------------------------
+20==            CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
+21==            CCVFGKVDDGK-SSD-AQSQA-TASEA-E-------------------------------
+22==            CCVFGKVDDGK-SSE-AQSQA-TTSEA-E-------------------------------
+23==            MCVFGNTDEPK-PDA-PASDTETTSEA-D-------------------------------
+24==            MCVCGTTDEPK-PDA-PPSDTETTSEA-E-------------------------------
+25==            SLACA-AEPSS-DAV-STTSG-TTTVT-DNEK----------------------------
+26==            SLACGSGESGS-DVK-SEASA-TTTME-EKPK----------------------------
+27==            WLLTCCQFDEK-ECE-DANDAEEEVVA-SER---GGESRDAAQMKEMMAMMQKMQAQQAA
+28==            WVLTCCQFDDK-ETE-DDKDAETEIPA-GESSD-AAPSADAAQMKEMMAMMQKMQQQQAA
+29==            --CQYRNINRKLSAA-GMHEALKLAER-PERPEFVLQNADYCRKKG--------------
+30==            --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
+31=p            --CQYRNINRKLSAA-GMHEALKLAER-PERSEFVLQNSDHCGKKG--------------
+32==            --CKFCR-----------------------------------------------------
+33=p            --CKFCR-----------------------------------------------------
+34==            --GKYRR-----------------------------------------------------
+35=p            --GKYRR-----------------------------------------------------
+36==            --GRRVR-RRR-------------------------------------------------
+                                                                            
+
+1==             ------------------------------------------------------------
+2==             ------------------------------------------------------------
+3==             ------------------------------------------------------------
+4=p             ------------------------------------------------------------
+5=p             ------------------------------------------------------------
+6==             ------------------------------------------------------------
+7==             ------------------------------------------------------------
+8=opsin,        ------------------------------------------------------------
+9==             ------------------------------------------------------------
+10==            ------------------------------------------------------------
+11==            ------------------------------------------------------------
+12==            ------------------------------------------------------------
+13==            ---------------------------------------MP-------------------
+14==            ------------------------------------------------------------
+15==            ------------------------------------------------------------
+16==            ------------------------------------------------------------
+17==            ------------------------------------------------------------
+18==            ------------------------------------------------------------
+19==            ------------------------------------------------------------
+20==            ------------------------------------------------------------
+21==            ------------------------------------------------------------
+22==            ------------------------------------------------------------
+23==            ------------------------------------------------------------
+24==            ------------------------------------------------------------
+25==            ------------------------------------------------------------
+26==            ------------------------------------------------------------
+27==            YQP---PPPPQGYPPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGA
+28==            YPPQGYAPPPQGYPPQGYPPQGY--PPQGYPPQGYPP---PPQGAPPQGAPP------AA
+29==            ------------------------------------------------------------
+30==            ------------------------------------------------------------
+31=p            ------------------------------------------------------------
+32==            ------------------------------------------------------------
+33=p            ------------------------------------------------------------
+34==            ------------------------------------------------------------
+35=p            ------------------------------------------------------------
+36==            ------------------------------------------------------------
+                                                                            
+
+1==             ---------SPA
+2==             ---------APA
+3==             ---------SPA
+4=p             ---------SPA
+5=p             ---------SPA
+6==             ------------
+7==             ---------GPN
+8=opsin,        ------------
+9==             ---------SPA
+10==            ---------SPA
+11==            ---------APA
+12==            ---------SPA
+13==            --------AHPV
+14==            ---------TAA
+15==            ---------TAA
+16==            ---------TAA
+17==            ---------SAA
+18==            ---------DKA
+19==            ---------EKS
+20==            ---------SKA
+21==            ---------SKA
+22==            ---------SKA
+23==            ---------SKA
+24==            ---------SKD
+25==            ---------SNA
+26==            --------IPEA
+27==            PPQGVDNQAYQA
+28==            PPQGVDNQAYQA
+29==            ---------HDS
+30==            ---------HDT
+31=p            ---------HDT
+32==            -----------Q
+33=p            -----------R
+34==            ---------GHR
+35=p            ---------GHR
+36==            ---------APQ
+