diff test-data/mafft_default.aln @ 15:bf28a8cff401 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/mafft_default.aln	Wed Mar 20 07:34:52 2024 +0000
@@ -0,0 +1,468 @@
+>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
+----------------------------------------MNG----------------T
+E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL
+AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM
+N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM
+GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF
+VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
+QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL
+GDDE--SGASTSKTEVSSVS-TSPVSPA--------------------------------
+---------------------------------------------------------
+>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
+----------------------------------------MNG----------------T
+E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML
+AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL
+H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM
+GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF
+VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
+QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL
+GDDE--ASATASKTE------TSQVAPA--------------------------------
+---------------------------------------------------------
+>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
+----------------------------------------MNG----------------T
+E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV
+CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW
+N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM
+GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF
+VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
+KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF
+GDEDVSSTVSQSKTEVSSVS-SSQVSPA--------------------------------
+---------------------------------------------------------
+>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
+----------------------------------------MNG----------------T
+E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL
+ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI
+N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA
+GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF
+VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
+KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL
+GDDE-SSTVSTSKTEVSS------VSPA--------------------------------
+---------------------------------------------------------
+>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
+----------------------------------------MNG----------------T
+E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL
+AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI
+N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA
+GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF
+ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
+KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL
+GDEE-SSTVSTSKTEVSS------VSPA--------------------------------
+---------------------------------------------------------
+>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
+----------------------------------------MKQ----------------V
+PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM
+SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF
+N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA
+GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF
+CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
+RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I
+EEDE--ASTSSQVTQVSS------VAPEK-------------------------------
+---------------------------------------------------------
+>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
+----------------------------------------MRK----------------M
+S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ
+AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC
+N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT
+VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF
+IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
+RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M
+TDES--DTCSSQKTEVSTVS-STQVGPN--------------------------------
+---------------------------------------------------------
+>     8=opsin, greensensitive  human (fragment) S07060
+------------------------------------------------------------
+------------------------------------------------------------
+------------------------------------------DLAETVIA-STISIVNQV
+S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
+GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
+VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESESTQK------AEKEVTRMVVVMVLAFC-----------------
+------------------------------------------------------------
+------------------------------------------------------------
+---------------------------------------------------------
+>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
+----------------------------------------MAQQWSLQRLAGRHPQDSYE
+DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
+SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV
+Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV
+GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
+VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
+PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
+DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
+---------------------------------------------------------
+>    10== Z68193   1 human Red Opsin <>[]
+----------------------------------------MAQQWSLQRLAGRHPQDSYE
+DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
+SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV
+S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
+GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
+VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
+PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
+DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
+---------------------------------------------------------
+>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
+----------------------------------------MTEAWNVAVFAARRSRDD-D
+DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV
+SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI
+F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII
+GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM
+ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
+PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V
+DDGS--EASTTSRTEVSSVS-NSSVAPA--------------------------------
+---------------------------------------------------------
+>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
+----------------------------------------MAA-WEAAFAARRRHEE--E
+DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT
+SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI
+S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA
+GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM
+VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
+PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V
+DDGS--EVST-SRTEVSSVS-NSSVSPA--------------------------------
+---------------------------------------------------------
+>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
+----------------------------------------MS-----------------S
+NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV
+AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI
+N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS
+GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF
+VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK--------------------------
+------------------------------------------------------------
+------------------------------------------------------------
+-------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
+KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T
+GKAS--PGTPGPHADVTAAGLRNKVMPAHPV-----------------------------
+---------------------------------------------------------
+>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
+----------MESGNVSS------------SLFGNVST-ALRP----------------E
+ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL
+GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF
+H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA
+MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
+FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
+--------------------------------------------------MN--------
+--VESL------------------------------------------------------
+----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
+DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N
+EKAP--ESSAVASTSTTQEP--QQTTAA--------------------------------
+---------------------------------------------------------
+>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
+----------MEYHNVSS------------VL-GNVSS-VLRP----------------D
+ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL
+GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF
+H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA
+MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
+FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
+--------------------------------------------------MN--------
+--VDSL------------------------------------------------------
+----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
+DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S
+EKAP--ESRAAISTSTTQEQ--QQTTAA--------------------------------
+---------------------------------------------------------
+>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
+----------ME------------------PL-CNASEPPLRP----------------E
+AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
+GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF
+H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
+MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
+FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK-------------------------
+--------------------------------------------------MN--------
+--VESL------------------------------------------------------
+----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
+DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N
+EKSG--EISSAQST-TTQEQ--QQTTAA--------------------------------
+---------------------------------------------------------
+>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
+----------MD------------------AL-CNASEPPLRP----------------E
+ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
+GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF
+H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
+MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
+LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK-------------------------
+--------------------------------------------------MN--------
+--VESL------------------------------------------------------
+----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
+DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N
+EKSG--EASSAQST-TTQEQ-TQQTSAA--------------------------------
+---------------------------------------------------------
+>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
+--------------------------------MTNATGPQMAY----------------Y
+GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL
+GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF
+SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV
+FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF
+VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
+--------------------------------------------------MN--------
+--VSTL------------------------------------------------------
+----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
+DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T
+ETKS--NDDSQSNSTVAQDK-A--------------------------------------
+---------------------------------------------------------
+>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
+--------------------------------MANVTGPQMAF----------------Y
+GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL
+GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF
+SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF
+MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF
+IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
+--------------------------------------------------MN--------
+--VTNL------------------------------------------------------
+----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
+NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K
+DPND--VEENQSSNTQTQEK-S--------------------------------------
+---------------------------------------------------------
+>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
+----------ME----SF------------AVAAAQLGPHFAP----------------L
+S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
+TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
+F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
+KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
+IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
+--------------------------------------------------MN--------
+--VKSL------------------------------------------------------
+----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
+F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
+DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
+---------------------------------------------------------
+>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
+----------ME----SF------------AVAAAQLGPHFAP----------------L
+S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
+TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
+F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
+KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
+IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
+--------------------------------------------------MN--------
+--VKSL------------------------------------------------------
+----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
+F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
+DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
+---------------------------------------------------------
+>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
+----------MD----SF------------AAVATQLGPQFAA----------------P
+S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL
+TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
+F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
+KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
+IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
+--------------------------------------------------MN--------
+--VKSL------------------------------------------------------
+----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
+F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
+DDGK--SSEAQSQA-TTSEA-ESKA-----------------------------------
+---------------------------------------------------------
+>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
+-----MERSHLP----ET------------PFDLAHSGPRFQA----------------Q
+SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL
+GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
+Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
+KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS
+LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK-------------------------
+--------------------------------------------------MN--------
+--VKSL------------------------------------------------------
+----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
+I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T
+DEPK--PDAPASDTETTSEA-DSKA-----------------------------------
+---------------------------------------------------------
+>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
+-----MERSLLP----EP------------PLAMALLGPRFEA----------------Q
+TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL
+GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
+Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
+KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS
+LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK-------------------------
+--------------------------------------------------MN--------
+--VKSL------------------------------------------------------
+----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
+I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T
+DEPK--PDAPPSDTETTSEA-ESKD-----------------------------------
+---------------------------------------------------------
+>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
+--------------------------------MIAVSGPSYEA----------------F
+SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL
+GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY
+Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI
+RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG
+IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK-------------------------
+--------------------------------------------------MN--------
+--VASL------------------------------------------------------
+----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
+L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A
+EPSS--DAVSTTSGTTTVTD-NEKSNA---------------------------------
+---------------------------------------------------------
+>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
+----------------------------------MANQLSYSS----------------L
+GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL
+GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF
+A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL
+LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG
+LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK-------------------------
+--------------------------------------------------MN--------
+--VASL------------------------------------------------------
+----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
+SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G
+ESGS--DVKSEASATTTMEE-KPKIPEA--------------------------------
+---------------------------------------------------------
+>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
+---------------------------------------MVES----------------T
+TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV
+GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF
+M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL
+MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY
+FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR-------------------------
+--------------------------------------------------LN--------
+--AKEL------------------------------------------------------
+----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
+PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C
+EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
+QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
+>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
+----------------------------------------MGR----------------D
+LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL
+GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF
+L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI
+MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF
+ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR-------------------------
+--------------------------------------------------LN--------
+--AKEL------------------------------------------------------
+----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
+PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T
+EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
+QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
+>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
+---------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D
+PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI
+GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
+IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
+MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
+AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
+---------------------------------PGFPRV----EPDSVIALNG-------
+--IVKL----------------------QK---------EVEECAN--------------
+----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
+GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
+------KLSAAGMHEALKLAERPERPEF------------VLQNADY-------------
+--------------------------------------------CRKKGHDS-----
+>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
+------------------------------------------------------------
+------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
+GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
+IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
+MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
+AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
+---------------------------------PGFPRV----QPESVISLNG-------
+--VVKL----------------------QK---------EVEECAN--------------
+----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
+GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR--
+------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
+--------------------------------------------CGKKGHDT-----
+>    31=p A47425 serotonin receptor 5HT-7 - rat
+------------------------------------------------------------
+------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
+GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
+IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
+MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
+AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
+---------------------------------PGFPRV----QPESVISLNG-------
+--VVKL----------------------QK---------EVEECAN--------------
+----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
+GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
+------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
+--------------------------------------------CGKKGHDT-----
+>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
+----------MDVLSP--------------------------------------------
+---------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT
+SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
+L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
+LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
+FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
+--------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR--
+-------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--
+PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
+ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ----
+------------------------------------------------------------
+---------------------------------------------------------
+>    33=p A35181 serotonin receptor class 1A - rat
+----------MDVFSF--------------------------------------------
+---------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT
+SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
+L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
+LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
+FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
+--------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG--
+-------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--
+SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
+ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR----
+------------------------------------------------------------
+---------------------------------------------------------
+>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
+MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
+SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
+SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
+S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
+MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
+VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
+SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
+-------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
+-----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
+DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
+------------------------------------------------------------
+---------------------------------------------------------
+>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
+MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
+SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
+SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
+S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
+MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
+VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
+SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
+-------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
+-----------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
+DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
+------------------------------------------------------------
+---------------------------------------------------------
+>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
+-MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T
+VVPN--TTWW------------QASAPFDTPAALVRAAAK--------------------
+AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV
+V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM
+MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT
+ASSFYVPVLIILILYWRIY-------QTARKRIR--------------------------
+-------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA
+AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV
+AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
+DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR--
+------A---------------PQ------------------------------------
+---------------------------------------------------------