diff test-data/mafft_fftns_result.aln @ 15:bf28a8cff401 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 2f6456c314c010fd73f5eeaf809a9afce47353af

--- a/test-data/mafft_fftns_result.aln	Tue Oct 31 15:48:53 2023 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,468 +0,0 @@
->     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
-----------------------------------------MNG----------------T
-E--G--DNFYVP----FSNKTGLARSPYEYPQY-------YLAEPWK---------YSAL
-AAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMANLFMVLFG-FTVTMYTSM
-N-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIVICKPMGN-FRFGNTHAIM
-GVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPDYYTLNPNFNNESYVVYMF
-VVHFLVPFVIIFFCYGRLLCTV----KEAAAAQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT-H
-QGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC--------GKNPL
-GDDE--SGASTSKTEVSSVS-TSPVSPA--------------------------------
----------------------------------------------------------
->     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
-----------------------------------------MNG----------------T
-E--G--PNFYVP----FSNITGVVRSPFEQPQY-------YLAEPWQ---------FSML
-AAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGG-FTTTLYTSL
-H-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVVVCKPMSN-FRFGENHAIM
-GVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGIDYYTLKPEVNNESFVIYMF
-VVHFTIPMIVIFFCYGQLVFTV----KEAAAQQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVAMYIFT-H
-QGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC--------GKNPL
-GDDE--ASATASKTE------TSQVAPA--------------------------------
----------------------------------------------------------
->     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
-----------------------------------------MNG----------------T
-E--G--INFYVP----MSNKTGVVRSPFEYPQY-------YLAEPWK---------YRLV
-CCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVADLFMACFG-FTVTFYTAW
-N-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIVVCKPMGN-FRFSATHAMM
-GIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPDYYTHNPDYHNESYVLYMF
-VIHFIIPVVVIFFSYGRLICKV----REAAAQQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT-N
-KGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC--------GKNPF
-GDEDVSSTVSQSKTEVSSVS-SSQVSPA--------------------------------
----------------------------------------------------------
->     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
-----------------------------------------MNG----------------T
-E--G--KNFYVP----MSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKIL
-ALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVAGTIMVCFG-FTVTFYTAI
-N-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSSHAFA
-GIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPDYYTLNPDYNNESYVIYMF
-VCHFILPVAVIFFTYGRLVCTV----KAAAAQQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVAAWIFF-N
-KGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC--------GKNPL
-GDDE-SSTVSTSKTEVSS------VSPA--------------------------------
----------------------------------------------------------
->     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
-----------------------------------------MNG----------------T
-E--G--NNFYVP----LSNRTGLVRSPFEYPQY-------YLAEPWQ---------FKLL
-AVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVAGAIMVCFG-FTVTFYTAI
-N-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIVVCKPMGS-FKFSSTHASA
-GIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPDYYTLNPEYNNESYVLYMF
-ICHFILPVTIIFFTYGRLVCTV----KAAAAQQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVAAWIFF-N
-KGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC--------GKNPL
-GDEE-SSTVSTSKTEVSS------VSPA--------------------------------
----------------------------------------------------------
->     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
-----------------------------------------MKQ----------------V
-PEFH--EDFYIPIPLDINNLS--AYSPFLVPQD-------HLGNQGI---------FMAM
-SVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIANLFVAIFG-SPLSFYSFF
-N-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLVICKPLGN-FTFKTPHAIA
-GCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPDWYTTNNKYNNESYVMFLF
-CFCFAVPFGTIVFCYGQLLITL----KLAAKAQA--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFSLWIVS-H
-RGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC--------GKN-I
-EEDE--ASTSSQVTQVSS------VAPEK-------------------------------
----------------------------------------------------------
->     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
-----------------------------------------MRK----------------M
-S--E--EEFYL-----FKNIS--SVGPWDGPQY-------HIAPVWA---------FYLQ
-AAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFGGFLLCIFS-VFPVFVASC
-N-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIVICKPFGN-FRFSSKHALT
-VVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPDWYTVGTKYRSESYTWFLF
-IFCFIVPLSLICFSYTQLLRAL----KAVAAQQQ--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN-N
-RNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC--------GKA-M
-TDES--DTCSSQKTEVSTVS-STQVGPN--------------------------------
----------------------------------------------------------
->     8=opsin, greensensitive  human (fragment) S07060
-------------------------------------------------------------
-------------------------------------------------------------
-------------------------------------------DLAETVIA-STISIVNQV
-S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
-GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
-VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESESTQK------AEKEVTRMVVVMVLAFC-----------------
-------------------------------------------------------------
-------------------------------------------------------------
----------------------------------------------------------
->     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
-----------------------------------------MAQQWSLQRLAGRHPQDSYE
-DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
-SVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISVVNQV
-Y-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMVVCKPFGN-VRFDAKLAIV
-GIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
-VTCCITPLSIIVLCYLQVWLAI----RAVAKQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA-N
-PGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
-DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
----------------------------------------------------------
->    10== Z68193   1 human Red Opsin <>[]
-----------------------------------------MAQQWSLQRLAGRHPQDSYE
-DSTQ--SSIFT-----YTNSNS-TRGPFEGPNY-------HIAPRWV---------YHLT
-SVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVADLAETVIA-STISIVNQV
-S-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLVVCKPFGN-VRFDAKLAIV
-GIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSYPGVQSYMIVLM
-VTCCIIPLAIIMLCYLQVWLAI----RAVAKQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA-N
-PGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF---------GKK-V
-DDGS--ELSSASKTEVSSV---SSVSPA--------------------------------
----------------------------------------------------------
->    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
-----------------------------------------MTEAWNVAVFAARRSRDD-D
-DTTR--GSVFT-----YTNTNN-TRGPFEGPNY-------HIAPRWV---------YNLV
-SFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFVDLVETLVA-STISVFNQI
-F-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFVVCKPFGN-IKFDSKLAII
-GIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSVELGCQSFMLTLM
-ITCCFLPLFIIIVCYLQVWMAI----RAVAAQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFVSFAAA-N
-PGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF---------GKK-V
-DDGS--EASTTSRTEVSSVS-NSSVAPA--------------------------------
----------------------------------------------------------
->    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
-----------------------------------------MAA-WEAAFAARRRHEE--E
-DTTR--DSVFT-----YTNSNN-TRGPFEGPNY-------HIAPRWV---------YNLT
-SVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVADLGETVIA-STISVINQI
-S-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFVVCKPFGN-IKFDGKLAVA
-GILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPDVFSGSSDPGVQSYMVVLM
-VTCCFFPLAIIILCYLQVWLAI----RAVAAQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA-N
-PGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF---------GKK-V
-DDGS--EVST-SRTEVSSVS-NSSVSPA--------------------------------
----------------------------------------------------------
->    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
-----------------------------------------MS-----------------S
-NSSQ--AP-----------PNG-TPGPFDGPQW------PYQAPQST---------YVGV
-AVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVADLLVTLCG-SSVSLSNNI
-N-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVVVCKPLGD-FQFQRRHAVS
-GCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPNWYTGGSNN--NSYILSLF
-VTCFVLPLSLILFSYTNLLLTL----RAAAAQQK--------------------------
-------------------------------------------------------------
-------------------------------------------------------------
--------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFALVVAT-H
-KGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY----QPQR-T
-GKAS--PGTPGPHADVTAAGLRNKVMPAHPV-----------------------------
----------------------------------------------------------
->    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
-----------MESGNVSS------------SLFGNVST-ALRP----------------E
-ARLS--A----------ETRLLGWNVPPEELR--------HIPEHWLTYPEPPESMNYLL
-GTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFCDFMMMVK--TPIFIYNSF
-H-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNVITRPMEG--KMTHGKAIA
-MIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
-FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
---------------------------------------------------MN--------
---VESL------------------------------------------------------
-----------RSNVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMSLIGAF-G
-DKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---------N
-EKAP--ESSAVASTSTTQEP--QQTTAA--------------------------------
----------------------------------------------------------
->    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
-----------MEYHNVSS------------VL-GNVSS-VLRP----------------D
-ARLS--A----------ESRLLGWNVPPDELR--------HIPEHWLIYPEPPESMNYLL
-GTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFCDFMMMIK--TPIFIYNSF
-H-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNVITRPMEG--KMTHGKAIA
-MIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFDYLT--DNFDTRLFVACIF
-FFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKK-------------------------
---------------------------------------------------MN--------
---VDSL------------------------------------------------------
-----------RSNVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMSLIGAF-G
-DKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---------S
-EKAP--ESRAAISTSTTQEQ--QQTTAA--------------------------------
----------------------------------------------------------
->    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
-----------ME------------------PL-CNASEPPLRP----------------E
-AR-S--SG---N----GDLQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
-GVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIF--NSF
-H-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
-MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
-FFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKK-------------------------
---------------------------------------------------MN--------
---VESL------------------------------------------------------
-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
-DKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---------N
-EKSG--EISSAQST-TTQEQ--QQTTAA--------------------------------
----------------------------------------------------------
->    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
-----------MD------------------AL-CNASEPPLRP----------------E
-ARMS--SG---S----DELQFLGWNVPPDQIQ--------YIPEHWLTQLEPPASMHYML
-GVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVFDLIMCLK--APIFIYNSF
-H-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNVITKPMNR--NMTFTKAVI
-MNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFDYLS--DNFDTRLFVGTIF
-LFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKK-------------------------
---------------------------------------------------MN--------
---VESL------------------------------------------------------
-----------RSNVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMSLIGAF-G
-DKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---------N
-EKSG--EASSAQST-TTQEQ-TQQTSAA--------------------------------
----------------------------------------------------------
->    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
---------------------------------MTNATGPQMAY----------------Y
-GAAS--MD-FGY----PEGVSIVDFVRPEIKP--------YVHQHWYNYPPVNPMWHYLL
-GVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALSDLIMLTTN-VPFFTYNCF
-SGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNIICNGFNG-PKLTTGKAVV
-FALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYDYLT--QDFNTFSYNIFIF
-VFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
---------------------------------------------------MN--------
---VSTL------------------------------------------------------
-----------RS-NEADAQR------AEIRIAKTALVNVSLWFICWTPYALISLKGVM-G
-DTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV------HE-T
-ETKS--NDDSQSNSTVAQDK-A--------------------------------------
----------------------------------------------------------
->    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
---------------------------------MANVTGPQMAF----------------Y
-GSGA--AT-FGY----PEGMTVADFVPDRVKH--------MVLDHWYNYPPVNPMWHYLL
-GVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALSDLIMLTTN-FPPFCYNCF
-SGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNIICNGFNG-PKLTQGKATF
-MCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYDYFT--RDMNTITYNICIF
-IFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKK-------------------------
---------------------------------------------------MN--------
---VTNL------------------------------------------------------
-----------RS-NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAITIQGLL-G
-NAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV------HE-K
-DPND--VEENQSSNTQTQEK-S--------------------------------------
----------------------------------------------------------
->    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
-----------ME----SF------------AVAAAQLGPHFAP----------------L
-S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
-TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
-F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
-KM---------------------------YVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
-IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
---------------------------------------------------MN--------
---VKSL------------------------------------------------------
-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
-F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
-DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
----------------------------------------------------------
->    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
-----------ME----SF------------AVAAAQLGPHFAP----------------L
-S-----------------NGSVVDKVTPDMAH--------LISPYWNQFPAMDPIWAKIL
-TAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
-F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
-KIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
-IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
---------------------------------------------------MN--------
---VKSL------------------------------------------------------
-----------RS-SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVINCMGLF-K
-F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
-DDGK--SSDAQSQA-TASEA-ESKA-----------------------------------
----------------------------------------------------------
->    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
-----------MD----SF------------AAVATQLGPQFAA----------------P
-S-----------------NGSVVDKVTPDMAH--------LISPYWDQFPAMDPIWAKIL
-TAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAISDFGIMITN-TPMMGINLY
-F-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQVIVKGMAG-RPMTIPLALG
-KIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGIDYLE--RDWNPRSYLIFYS
-IFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKK-------------------------
---------------------------------------------------MN--------
---VKSL------------------------------------------------------
-----------RS-SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVINCMGLF-K
-F-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF------GK-V
-DDGK--SSEAQSQA-TTSEA-ESKA-----------------------------------
----------------------------------------------------------
->    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
------MERSHLP----ET------------PFDLAHSGPRFQA----------------Q
-SSG---------------NGSVLDNVLPDMAH--------LVNPYWSRFAPMDPMMSKIL
-GLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
-Y-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
-KILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSIDYMT--RMWNPRSYLITYS
-LFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKK-------------------------
---------------------------------------------------MN--------
---VKSL------------------------------------------------------
-----------RS-SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVICYFGLF-K
-I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF------GN-T
-DEPK--PDAPASDTETTSEA-DSKA-----------------------------------
----------------------------------------------------------
->    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
------MERSLLP----EP------------PLAMALLGPRFEA----------------Q
-TGG---------------NRSVLDNVLPDMAP--------LVNPHWSRFAPMDPTMSKIL
-GLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFSDFCMMASQ-SPVMIINFY
-Y-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNVIVKGING-TPMTIKTSIM
-KIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSIDYMT--RQWNPRSYLITYS
-LFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKK-------------------------
---------------------------------------------------MN--------
---VKSL------------------------------------------------------
-----------RS-SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIICYFGLF-K
-I-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC------GT-T
-DEPK--PDAPPSDTETTSEA-ESKD-----------------------------------
----------------------------------------------------------
->    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
---------------------------------MIAVSGPSYEA----------------F
-SYGG--QARF-------NNQTVVDKVPPDMLH--------LIDANWYQYPPLNPMWHGIL
-GFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCM-SPPMVINCY
-Y-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLSG-KPLSINGALI
-RIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTDYFN--RGLLSASYLVCYG
-IWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKK-------------------------
---------------------------------------------------MN--------
---VASL------------------------------------------------------
-----------RS-SENQNTS------AECKLAKVALMTISLWFMAWTPYLVINFSGIF-N
-L-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC-------A-A
-EPSS--DAVSTTSGTTTVTD-NEKSNA---------------------------------
----------------------------------------------------------
->    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
-----------------------------------MANQLSYSS----------------L
-GWPY--QP----------NASVVDTMPKEMLY--------MIHEHWYAFPPMNPLWYSIL
-GVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFSDFCMMAFM-MPTMTSNCF
-A-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNVIVRGMAA-APLTHKKATL
-LLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVDYLT--KDWSSASYVVIYG
-LAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKK-------------------------
---------------------------------------------------MN--------
---VASL------------------------------------------------------
-----------RANADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIISWAGVF-S
-SGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC------GS-G
-ESGS--DVKSEASATTTMEE-KPKIPEA--------------------------------
----------------------------------------------------------
->    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
----------------------------------------MVES----------------T
-TLVN--QT-WWY------NPTVD------------------IHPHWAKFDPIPDAVYYSV
-GIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMSDLSFSAINGFPLKTISAF
-M-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNVIGRPMAASKKMSHRRAFL
-MIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFDYLS--TDPSTRSFILCMY
-FCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKR-------------------------
---------------------------------------------------LN--------
---AKEL------------------------------------------------------
-----------R--KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIALLAQF-G
-PAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQFDEKE-C
-EDAN--DAEEEVVASER--G-GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PP
-QGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQA
->    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
-----------------------------------------MGR----------------D
-LRDN--ET-WWY------NPSIV------------------VHPHWREFDQVPDAVYYSL
-GIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFPLMTISCF
-L-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNVIGRPMAASKKMSHRRAFI
-MIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFDYIS--RDSTTRSNILCMF
-ILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKR-------------------------
---------------------------------------------------LN--------
---AKEL------------------------------------------------------
-----------R--KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-G
-PLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE-T
-EDDK--DAETEIPAGESSDA-APSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPP
-QGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQA
->    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
----------MMDVNSSGRPDLYGHLRSFL-LPEVGRGLPDLSPDGGA------------D
-PVAGSWAPHLLS------EVTASPAPTWDAPPDNASGCGEQIN--------YGRVEKVVI
-GSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
-IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
-MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
-AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
----------------------------------PGFPRV----EPDSVIALNG-------
---IVKL----------------------QK---------EVEECAN--------------
-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
-GTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
-------KLSAAGMHEALKLAERPERPEF------------VLQNADY-------------
---------------------------------------------CRKKGHDS-----
->    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
-------------------------------------------------------------
-------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
-GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
-IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
-MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
-AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
----------------------------------PGFPRV----QPESVISLNG-------
---VVKL----------------------QK---------EVEECAN--------------
-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
-GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQCQYR----NINR--
-------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
---------------------------------------------CGKKGHDT-----
->    31=p A47425 serotonin receptor 5HT-7 - rat
-------------------------------------------------------------
-------MPHLLS---GFLEVTASPAPTWDAPPDNVSGCGEQIN--------YGRVEKVVI
-GSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALADLSVAVAV-MPFVSVTDL
-IGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLGITRPLTYPVRQNGKCMAK
-MILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQDF----------GYTIYST
-AVAFYIPMSVMLFMYYQIY-------KAARKSAAKHKF----------------------
----------------------------------PGFPRV----QPESVISLNG-------
---VVKL----------------------QK---------EVEECAN--------------
-----LSRLLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLSTARPFIC
-GTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQCQYR----NINR--
-------KLSAAGMHEALKLAERPERSEF------------VLQNSDH-------------
---------------------------------------------CGKKGHDT-----
->    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
-----------MDVLSP--------------------------------------------
----------------GQGNNTTSPPAPFET-GGNTTGISDVT---------VSYQ--VIT
-SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
-L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
-LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
-FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
---------------TVKKVEKTGADTRHGASPAPQPKKS-----------VNGESGSR--
--------NWRLGVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPLPSEAG--
-PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
-ESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RQ----
-------------------------------------------------------------
----------------------------------------------------------
->    33=p A35181 serotonin receptor class 1A - rat
-----------MDVFSF--------------------------------------------
----------------GQGNNTTASQEPFGT-GGNVTSISDVT---------FSYQ--VIT
-SLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLV-LPMAALYQV
-L-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWAITDPIDYVNKRTPRRAAA
-LISLTWLIGFLI-SIPPMLG-WRTPEDRSDPD---ACTISKDH----------GYTIYST
-FGAFYIPLLLMLVLYGRIF-------RAARFRIRK-------------------------
---------------TVRKVEKKGAGTSLGTSSAPPPKKS-----------LNGQPGSG--
--------DWRRCAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPLPSESG--
-SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-C
-ESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKCKFC----RR----
-------------------------------------------------------------
----------------------------------------------------------
->    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
-MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
-SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
-SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
-S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
-MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
-VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
-SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
-DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
-------------------------------------------------------------
----------------------------------------------------------
->    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
-MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGLSPTGLV------------T
-SDFN--DSYGLT---GQFINGSHSSRSRDNASANDTSATNMTDDRYWSLTVYSHEHLVLT
-SVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVADLMVAVLV-MPLSVVSEI
-S-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWAVTS-IDYIRRRSARRILL
-MIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQDK----------GYTIFST
-VGAFYLPMLVMMIIYIRIW-------LVARSRIRKDKFQMTKARLKTEETTLVASPKTEY
-SVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGVNSNSSS---
--------SERLKQIQIETAEAFANGCA----EEASIAMLERQ-CNNGKKISSNDTPYS--
------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIALIGPF-V
-DPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFGKYR----RGHR--
-------------------------------------------------------------
----------------------------------------------------------
->    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
--MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGWEPNWNV------------T
-VVPN--TTWW------------QASAPFDTPAALVRAAAK--------------------
-AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVADLLVACLV-MPLGAVYEV
-V-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWAVTN-IDYIHASTAKRVGM
-MIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQDV----------GYQIFAT
-ASSFYVPVLIILILYWRIY-------QTARKRIR--------------------------
--------------------RRRGATARGGVGPPP---------VPAGGALVAGGGSGGIA
-AAVVAVIGRPLPTISETTTTGFTNVSS----NNTSP---EKQSCANGLEADPPTTGYGAV
-AAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLAILVPT-C
-DCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCGRRV----RRRR--
-------A---------------PQ------------------------------------
----------------------------------------------------------