Mercurial > repos > rnateam > mafft
view test-data/mafft_custom_result.aln @ 8:4de39704d423 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 7f48fa9f0c2ef08ffe621a8215ea307ab780b9b5"
| author | bgruening |
|---|---|
| date | Sat, 13 Mar 2021 22:18:32 +0000 |
| parents | aaefa93c2dd2 |
| children |
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CLUSTAL format alignment by MAFFT F-INS-i (v7.455) 1== MN------------------------GTE--GDNFYVPFS--------NKTGL-ARSPYE 2== MN------------------------GTE--GPNFYVPFS--------NITGV-VRSPFE 3== MN------------------------GTE--GINFYVPMS--------NKTGV-VRSPFE 4=p MN------------------------GTE--GKNFYVPMS--------NRTGL-VRSPFE 5=p MN------------------------GTE--GNNFYVPLS--------NRTGL-VRSPFE 6== MK------------------------QVPEFHEDFYIPIP-------LDINNLSAYSPFL 7== MR------------------------KMS--EEEFYL------------FKNISSVGPWD 8=opsin, ------------------------------------------------------------ 9== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE 10== MAQQWSLQ-RLAGRHPQDS----YEDSTQ--SSIFTYTNS--------NS----TRGPFE 11== MTEAWNVAVFAARRSRDD------DDTTR--GSVFTYTNT--------NN----TRGPFE 12== MA-AWEAA-FAARRRHEE------EDTTR--DSVFTYTNS--------NN----TRGPFE 13== MS----------------------SNSSQ--------------AP--PNG----TPGPFD 14== MESG-NV-----------------------------------------SSSLFGNVSTAL 15== MEYH-NV------------------------------------------SSVLGNVSSVL 16== MEPLCNA------------------------------------------------SEPPL 17== MDALCNA------------------------------------------------SEPPL 18== MT-------------------------------------------------------NAT 19== MA-------------------------------------------------------NVT 20== ME-------------------------------------------------SFAVAAAQL 21== ME-------------------------------------------------SFAVAAAQL 22== MD-------------------------------------------------SFAAVATQL 23== MERS--------------------------------------------HLPETPFDLAHS 24== MERS--------------------------------------------LLPEPPLAMALL 25== MI-------------------------------------------------------AVS 26== M----------------------------------------------------------- 27== MVESTT------------------------------------------------------ 28== MGRD-------------------------------------------------------- 29== MM-----DVNSSGRPDLYGH-----------LRSFLLPEVGRGLPDLSPDGGADPVAGSW 30== M----------------------------------------------------------- 31=p M----------------------------------------------------------- 32== MD------VLSPGQ----------------------------------GNNTTSPPAPFE 33=p MD------VFSFGQ----------------------------------GNNTTASQEPFG 34== MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL 35=p MA------NFTFGDLALDVARMGGLASTPS------------------GLRSTGLTTPGL 36== ME-------GAEGQEELD-------------WEALYLRL---------PLQNCSWNSTGW 1== YP---------------------------------------------------------- 2== QP---------------------------------------------------------- 3== YP---------------------------------------------------------- 4=p YP---------------------------------------------------------- 5=p YP---------------------------------------------------------- 6== VP---------------------------------------------------------- 7== GP---------------------------------------------------------- 8=opsin, ------------------------------------------------------------ 9== GP---------------------------------------------------------- 10== GP---------------------------------------------------------- 11== GP---------------------------------------------------------- 12== GP---------------------------------------------------------- 13== GP---------------------------------------------------------- 14== RPEARL----------------------SAETRLLGWNVPPEELRHIPEHWL-------- 15== RPDARL----------------------SAESRLLGWNVPPDELRHIPEHWL-------- 16== RPEAR-SSG-------------------NGDLQFLGWNVPPDQIQYIPEHWL-------- 17== RPEARMSSG-------------------SDELQFLGWNVPPDQIQYIPEHWL-------- 18== GPQMAYYGAASMDFG-------------YPEGVSIVDFVRPEIKPYVHQHWY-------- 19== GPQMAFYGSGAATFG-------------YPEGMTVADFVPDRVKHMVLDHWY-------- 20== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- 21== GPHFAPLS-----------------------NGSVVDKVTPDMAHLISPYWN-------- 22== GPQFAAPS-----------------------NGSVVDKVTPDMAHLISPYWD-------- 23== GPRFQAQSSG---------------------NGSVLDNVLPDMAHLVNPYWS-------- 24== GPRFEAQTGG---------------------NRSVLDNVLPDMAPLVNPHWS-------- 25== GPSYEAFSYG--GQA-------------RFNNQTVVDKVPPDMLHLIDANWY-------- 26== -ANQLSYSSL--GWP-------------YQPNASVVDTMPKEMLYMIHEHWY-------- 27== ----------LVNQT-------------WWYNPTV----------DIHPHWA-------- 28== ---------LRDNET-------------WWYNPSI----------VVHPHWR-------- 29== APHLLS-----------------------------------EVTASPAPTWDAPPDNASG 30== -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG 31=p -PHLLSGF--------------------------------LEVTASPAPTWDAPPDNVSG 32== TG--------------------------------------GNTTGI-------------- 33=p TG--------------------------------------GNVTSI-------------- 34== SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- 35=p SPTGLVTSDFNDSYGLTGQFINGSHSSRSRDNASANDTSATNMTD--DRYWSL------- 36== EPNW-------------------------------------NVTVVPNTTWWQ------- 1== -----QY-YLAEPWKYSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAM 2== -----QY-YLAEPWQFSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAV 3== -----QY-YLAEPWKYRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAV 4=p -----QY-YLAEPWQFKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAV 5=p -----QY-YLAEPWQFKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAV 6== -----QD-HLGNQGIFMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSI 7== -----QY-HIAPVWAFYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSF 8=opsin, ------------------------------------------------------------ 9== -----NY-HIAPRWVYHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAV 10== -----NY-HIAPRWVYHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAV 11== -----NY-HIAPRWVYNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAF 12== -----NY-HIAPRWVYNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAV 13== -----QWPYQAPQSTYVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAV 14== -----TY-PEPPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAF 15== -----IY-PEPPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAF 16== -----TQ-LEPPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAV 17== -----TQ-LEPPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAV 18== -----NY-PPVNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLAL 19== -----NY-PPVNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLAL 20== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI 21== -----QF-PAMDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI 22== -----QF-PAMDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAI 23== -----RF-APMDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF 24== -----RF-APMDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAF 25== -----QY-PPLNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAI 26== -----AF-PPMNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAF 27== -----KF-DPIPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAM 28== -----EF-DQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAF 29== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLAL 30== CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL 31=p CGEQINY----GRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLAL 32== SDVTVSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV 33=p SDVTFSY--------QVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAV 34== TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV 35=p TVYSHEH--------LVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAV 36== --ASAPFDTPAALVRAAAKAVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAV 1== ANLFMVLFG-FTVTMYTSMNG-YFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYI 2== ADLFMVFGG-FTTTLYTSLHG-YFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYV 3== ADLFMACFG-FTVTFYTAWNG-YFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYI 4=p AGTIMVCFG-FTVTFYTAING-YFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI 5=p AGAIMVCFG-FTVTFYTAING-YFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYI 6== ANLFVAIFG-SPLSFYSFFNR-YFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWL 7== GGFLLCIFS-VFPVFVASCNG-YFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYI 8=opsin, -DLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL 9== ADLAETVIA-STISVVNQVYG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWM 10== ADLAETVIA-STISIVNQVSG-YFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWL 11== VDLVETLVA-STISVFNQIFG-YFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWF 12== ADLGETVIA-STISVINQISG-YFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWF 13== ADLLVTLCG-SSVSLSNNING-FFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYV 14== CDFMMMVK--TPIFIYNSFHQ-GYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFN 15== CDFMMMIK--TPIFIYNSFHQ-GYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYN 16== FDLIMCLK--APIF--NSFHR-GFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN 17== FDLIMCLK--APIFIYNSFHR-GFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYN 18== SDLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYN 19== SDLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYN 20== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ 21== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ 22== SDFGIMITN-TPMMGINLYFE-TWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQ 23== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYN 24== SDFCMMASQ-SPVMIINFYYE-TWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYN 25== SNFLMMFCM-SPPMVINCYYE-TWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYN 26== SDFCMMAFM-MPTMTSNCFAE-TWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYN 27== SDLSFSAINGFPLKTISAFMK-KWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYN 28== SDFTFSLVNGFPLMTISCFLK-KWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYN 29== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL 30== ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL 31=p ADLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYL 32== TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW 33=p TDLMVSVLV-LPMAALYQVLN-KWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYW 34== ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW 35=p ADLMVAVLV-MPLSVVSEISK-VWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYW 36== ADLLVACLV-MPLGAVYEVVQ-RWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYW . : : * : : :*: 1== VICKPMGNFR-FGNTHAIMGVAFTWIMALACA-APPLV-GWSRYIPEGMQCSCGPDYYTL 2== VVCKPMSNFR-FGENHAIMGVAFTWVMALACA-APPLV-GWSRYIPEGMQCSCGIDYYTL 3== VVCKPMGNFR-FSATHAMMGIAFTWVMAFSCA-APPLF-GWSRYMPEGMQCSCGPDYYTH 4=p VVCKPMGSFK-FSSSHAFAGIAFTWVMALACA-APPLF-GWSRYIPEGMQCSCGPDYYTL 5=p VVCKPMGSFK-FSSTHASAGIAFTWVMAMACA-APPLV-GWSRYIPEGIQCSCGPDYYTL 6== VICKPLGNFT-FKTPHAIAGCILPWISALAAS-LPPLF-GWSRYIPEGLQCSCGPDWYTT 7== VICKPFGNFR-FSSKHALTVVLATWTIGIGVS-IPPFF-GWSRFIPEGLQCSCGPDWYTV 8=opsin, VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG 9== VVCKPFGNVR-FDAKLAIVGIAFSWIWAAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG 10== VVCKPFGNVR-FDAKLAIVGIAFSWIWSAVWT-APPIF-GWSRYWPHGLKTSCGPDVFSG 11== VVCKPFGNIK-FDSKLAIIGIVFSWVWAWGWS-APPIF-GWSRYWPHGLKTSCGPDVFSG 12== VVCKPFGNIK-FDGKLAVAGILFSWLWSCAWT-APPIF-GWSRYWPHGLKTSCGPDVFSG 13== VVCKPLGDFQ-FQRRHAVSGCAFTWGWALLWS-APPLL-GWSSYVPEGLRTSCGPNWYTG 14== VITRPMEGK--MTHGKAIAMIIFIYMYATPWV-VACYTETWGRFVPEGYLTSCTFDYLTD 15== VITRPMEGK--MTHGKAIAMIIFIYLYATPWV-VACYTESWGRFVPEGYLTSCTFDYLTD 16== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD 17== VITKPMNRN--MTFTKAVIMNIIIWLYCTPWV-VLPLTQFWDRFVPEGYLTSCSFDYLSD 18== IICNGFNGPK-LTTGKAVVFALISWVIAIGCA-LPPFF-GWGNYILEGILDSCSYDYLTQ 19== IICNGFNGPK-LTQGKATFMCGLAWVISVGWS-LPPFF-GWGSYTLEGILDSCSYDYFTR 20== VIVKGMAGRP-MTIPLALGKM----------------------YVPEGNLTSCGIDYLER 21== VIVKGMAGRP-MTIPLALGKIAYIWFMSSIWC-LAPAF-GWSRYVPEGNLTSCGIDYLER 22== VIVKGMAGRP-MTIPLALGKIAYIWFMSTIWCCLAPVF-GWSRYVPEGNLTSCGIDYLER 23== VIVKGINGTP-MTIKTSIMKILFIWMMAVFWT-VMPLI-GWSAYVPEGNLTACSIDYMTR 24== VIVKGINGTP-MTIKTSIMKIAFIWMMAVFWT-IMPLI-GWSSYVPEGNLTACSIDYMTR 25== VIVKGLSGKP-LSINGALIRIIAIWLFSLGWT-IAPMF-GWNRYVPEGNMTACGTDYFNR 26== VIVRGMAAAP-LTHKKATLLLLFVWIWSGGWT-ILPFF-GWSRYVPEGNLTSCTVDYLTK 27== VIGRPMAASKKMSHRRAFLMIIFVWMWSIVWS-VGPVF-NWGAYVPEGILTSCSFDYLST 28== VIGRPMAASKKMSHRRAFIMIIFVWLWSVLWA-IGPIF-GWGAYTLEGVLCNCSFDYISR 29== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ 30== GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ 31=p GITRPLTYPVRQNGKCMAKMILSVWLLSASIT-LPPLF-GWAQNVNDDKVC-----LISQ 32== AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK 33=p AITDPIDYVNKRTPRRAAALISLTWLIGFLIS-IPPML-GWRTPEDRSDPDAC---TISK 34== AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ 35=p AVTS-IDYIRRRSARRILLMIMVVWIVALFIS-IPPLF-GWRD--PNNDPDKTGTCIISQ 36== AVTN-IDYIHASTAKRVGMMIACVWTVSFFVC-IAQLL-GWKDPDWNQRVSEDLRCVVSQ : : 1== NPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTVKEAAAAQQE--------------- 2== KPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTVKEAAAQQQE--------------- 3== NPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKVREAAAQQQE--------------- 4=p NPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTVKAAAAQQQD--------------- 5=p NPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTVKAAAAQQQD--------------- 6== NNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITLKLAAKAQAD--------------- 7== GTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRALKAVAAQQQE--------------- 8=opsin, SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- 9== SSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAIRAVAKQQKE--------------- 10== SSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAIRAVAKQQKE--------------- 11== SVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAIRAVAAQQKE--------------- 12== SSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAIRAVAAQQKE--------------- 13== GS--NNNSYILSLFVTCFVLPLSLILFSYTNLLLTLRAAAAQQKE--------------- 14== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVESLRSNV- 15== NF--DTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKALRDQAKKMNVDSLRSNV- 16== NF--DTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKALREQAKKMNVESLRSNV- 17== NF--DTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKALREQAKKMNVESLRSNV- 18== DF--NTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAAMRAQAKKMNVSTLRSN-- 19== DM--NTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAAMRAQAKKMNVTNLRSN-- 20== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- 21== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- 22== DW--NPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKAMREQAKKMNVKSLRSS-- 23== MW--NPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKAMREQAKKMNVKSLRSS-- 24== QW--NPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKAMRDQAKKMNVKSLRSS-- 25== GL--LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVASLRSS-- 26== DW--SSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQLREQAKKMNVASLRANA- 27== DP--STRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- 28== DS--TTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKA-- 29== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- 30== D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- 31=p D-----FGYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKFP-------------- 32== D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVKKVEKTGADTRHGASP 33=p D-----HGYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRKTVRKVEKKGAGTSLGTSS 34== D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV 35=p D-----KGYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEETTLV 36== D-----VGYQIFATASSFYVPVLIILILYWRIYQTARKRIRRRRGA-------TARGGVG * : * : 1== ------------------------------------------------------------ 2== ------------------------------------------------------------ 3== ------------------------------------------------------------ 4=p ------------------------------------------------------------ 5=p ------------------------------------------------------------ 6== ------------------------------------------------------------ 7== ------------------------------------------------------------ 8=opsin, ------------------------------------------------------------ 9== ------------------------------------------------------------ 10== ------------------------------------------------------------ 11== ------------------------------------------------------------ 12== ------------------------------------------------------------ 13== ------------------------------------------------------------ 14== ------------------------------------------------------------ 15== ------------------------------------------------------------ 16== ------------------------------------------------------------ 17== ------------------------------------------------------------ 18== ------------------------------------------------------------ 19== ------------------------------------------------------------ 20== ------------------------------------------------------------ 21== ------------------------------------------------------------ 22== ------------------------------------------------------------ 23== ------------------------------------------------------------ 24== ------------------------------------------------------------ 25== ------------------------------------------------------------ 26== ------------------------------------------------------------ 27== ------------------------------------------------------------ 28== ------------------------------------------------------------ 29== GFPRVE--------------------------------PDSVI----------ALNGIVK 30== GFPRVQ--------------------------------PESVI----------SLNGVVK 31=p GFPRVQ--------------------------------PESVI----------SLNGVVK 32== A-PQPKKS-VNGESGSRNWRLGVESKAGGAL-----C-----------------ANGAVR 33=p A-PPPKKS-LNGQPGSGDWRRCAENRAVGTP-----C-----------------TNGAVR 34== ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- 35=p ASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENANGV-- 36== PPPVPAGGALVAGGGSGGIAAAVVAVIGR---------PLPTISET-------TTTGFTN 1== ------------------------------------------------------------ 2== ------------------------------------------------------------ 3== ------------------------------------------------------------ 4=p ------------------------------------------------------------ 5=p ------------------------------------------------------------ 6== ------------------------------------------------------------ 7== ------------------------------------------------------------ 8=opsin, ------------------------------------------------------------ 9== ------------------------------------------------------------ 10== ------------------------------------------------------------ 11== ------------------------------------------------------------ 12== ------------------------------------------------------------ 13== ------------------------------------------------------------ 14== ------------------------------------------------------------ 15== ------------------------------------------------------------ 16== ------------------------------------------------------------ 17== ------------------------------------------------------------ 18== ------------------------------------------------------------ 19== ------------------------------------------------------------ 20== ------------------------------------------------------------ 21== ------------------------------------------------------------ 22== ------------------------------------------------------------ 23== ------------------------------------------------------------ 24== ------------------------------------------------------------ 25== ------------------------------------------------------------ 26== ------------------------------------------------------------ 27== ------------------------------------------------------------ 28== ------------------------------------------------------------ 29== -------------LQKEVEEC-AN------------------LSRLLKHER--------- 30== -------------LQKEVEEC-AN------------------LSRLLKHER--------- 31=p -------------LQKEVEEC-AN------------------LSRLLKHER--------- 32== QGDDGAALEV-----IEVHRV-GNSKEHLPLPSEAGP--TPCAPASFERKNERN------ 33=p QGDDEATLEV-----IEVHRV-GNSKEHLPLPSESGS--NSYAPACLERKNERN------ 34== -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN 35=p -NSNSSSSERLKQIQIETAEAFANGC------------AEEASIAMLERQCNNGKKISSN 36== VSSNNTSP--------EKQSC-ANGLEADPPTTGYGAVAAAYYPSLVRRKP--------- 1== --------SASTQKAEKEVTRMVVLMVIGFLVCWVPYASVAFYIFT--HQGSDFGAT-FM 2== --------SATTQKAEKEVTRMVIIMVIFFLICWLPYASVAMYIFT--HQGSNFGPI-FM 3== --------SATTQKAEKEVTRMVILMVLGFMLAWTPYAVVAFWIFT--NKGADFTAT-LM 4=p --------SASTQKAEREVTKMVILMVFGFLIAWTPYATVAAWIFF--NKGADFSAK-FM 5=p --------SASTQKAEREVTKMVILMVLGFLVAWTPYATVAAWIFF--NKGAAFSAQ-FM 6== --------SASTQKAEREVTKMVVVMVLGFLVCWAPYASFSLWIVS--HRGEEFDLR-MA 7== --------SATTQKAEREVSRMVVVMVGSFCVCYVPYAAFAMYMVN--NRNHGLDLR-LV 8=opsin, --------SESTQKAEKEVTRMVVVMVLAFC----------------------------- 9== --------SESTQKAEKEVTRMVVVMVLAFCFCWGPYAFFACFAAA--NPGYPFHPL-MA 10== --------SESTQKAEKEVTRMVVVMIFAYCVCWGPYTFFACFAAA--NPGYAFHPL-MA 11== --------SESTQKAEREVSRMVVVMIVAFCICWGPYASFVSFAAA--NPGYAFHPL-AA 12== --------SESTQKAEKEVSRMVVVMIVAYCFCWGPYTFFACFAAA--NPGYAFHPL-AA 13== --------ADTTQRAEREVTRMVIVMVMAFLLCWLPYSTFALVVAT--HKGIIIQPV-LA 14== --------DKNKETAEIRIAKAAITICFLFFCSWTPYGVMSLIGAF--GDKTLLTPG-AT 15== --------DKSKEAAEIRIAKAAITICFLFFASWTPYGVMSLIGAF--GDKTLLTPG-AT 16== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTQG-AT 17== --------DKSKETAEIRIAKAAITICFLFFVSWTPYGVMSLIGAF--GDKSLLTPG-AT 18== --------EADAQRAEIRIAKTALVNVSLWFICWTPYALISLKGVM--GDTSGITPL-VS 19== --------EAETQRAEIRIAKTALVNVSLWFICWTPYAAITIQGLL--GNAEGITPL-LT 20== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT 21== --------EDAEKSAEGKLAKVALVTITLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT 22== --------EDADKSAEGKLAKVALVTISLWFMAWTPYLVINCMGLF--KF-EGLTPL-NT 23== --------EDCDKSAEGKLAKVALTTISLWFMAWTPYLVICYFGLF--KI-DGLTPL-TT 24== --------EDCDKSAENKLAKVALTTISLWFMAWTPYLIICYFGLF--KI-DGLTPL-TT 25== --------ENQNTSAECKLAKVALMTISLWFMAWTPYLVINFSGIF--NL-VKISPL-FT 26== --------DQQKQSAECRLAKVAMMTVGLWFMAWTPYLIISWAGVF--SSGTRLTPL-AT 27== --------Q-AGASAEMKLAKISMVIITQFMLSWSPYAIIALLAQF--GPAEWVTPY-AA 28== --------Q-AGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQF--GPLEWVTPY-AA 29== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE 30== -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE 31=p -------KNISIFKREQKAATTLGIIVGAFTVCWLPFFLLSTARPFICGTSCSCIPLWVE 32== ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPTL-LG 33=p ----AEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVALVLPF-CESSCHMPAL-LG 34== DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR 35=p DTPYSRTREKLELKRERKAARTLAIITGAFLICWLPFFIIALIGPF--VDPEGIPPF-AR 36== -------KEAADSKRERKAAKTLAIITGAFVACWLPFFVLAILVPT-CD--CEVSPV-LT * . : 1== TLPAFFAKSSALYNPVIYILMNKQFRNCMITTL-----CC-----GKNPLGDDE-SGA-S 2== TLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSL-----CC-----GKNPLGDDE-ASA-T 3== AVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTI-----CC-----GKNPFGDEDVSSTVS 4=p AIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTI-----FC-----GKNPLGDDE-SSTVS 5=p AIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTL-----FC-----GKNPLGDEE-SSTVS 6== TIPSCLSKASTVYNPVIYVLMNKQFRSCMMK-M-----VC-----GKN-IEEDE-AST-S 7== TIPSFFSKSACIYNPIIYCFMNKQFQACIMK-M-----VC-----GKA-MTDES-DTC-S 8=opsin, ------------------------------------------------------------ 9== ALPAFFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S 10== ALPAYFAKSATIYNPVIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-ELS-S 11== ALPAYFAKSATIYNPVIYVFMNRQFRNCIMQ-L-----F------GKK-VDDGS-EAS-T 12== ALPAYFAKSATIYNPIIYVFMNRQFRNCILQ-L-----F------GKK-VDDGS-EVS-T 13== SLPSYFSKTATVYNPIIYVFMNKQFQSCLLEML-----CC-----GYQPQRTGKASPGTP 14== MIPACACKMVACIDPFVYAISHPRYRMELQKRCPW---LALN---EK----APE-SSA-V 15== MIPACTCKMVACIDPFVYAISHPRYRMELQKRCPW---LAIS---EK----APE-SRA-A 16== MIPACTCKLVACIDPFVYAISHPRYRLELQKRCPW---LGVN---EK----SGE-ISS-A 17== MIPACTCKLVACIEPFVYAISHPRYRMELQKRCPW---LGVN---EK----SGE-ASS-A 18== TLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPW---FCVH---ET----ETK-SND-D 19== TLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPW---FCVH---EK----DPN-DVE-E 20== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A 21== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSD-A 22== IWGACFAKSAACYNPIVYGISHPKYRLALKEKCP----CCVF---GKV--DDGK-SSE-A 23== IWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCP----MCVF---GNT--DEPK-PDA-P 24== IWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCP----MCVC---GTT--DEPK-PDA-P 25== IWGSLFAKANAVYNPIVYGISHPKYRAALFAKFP----SLAC---AA----EPS-SDA-V 26== IWGSVFAKANSCYNPIVYGISHPRYKAALYQRFP----SLAC---GS---GESG-SDV-K 27== ELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQF---DEK--ECED-AND-A 28== QLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQF---DDK--ETED-DKD-A 29== RTFLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM 30== RTCLWLGYANSLINPFIYAFFNRDLRPTSRSLL-----QCQYRNINRKL------SAAGM 31=p RTCLWLGYANSLINPFIYAFFNRDLRTTYRSLL-----QCQYRNINRKL------SAAGM 32== AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRQ------------ 33=p AIINWLGYSNSLLNPVIYAYFNKDFQNAFKKII-----KCKF---CRR------------ 34== SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ 35=p SFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKIL-----FGKYR-RGHR------------ 36== SLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLL------CGRRVRRRR------------ 1== TSKTEVSSVSTS------------------------------------------------ 2== ASKTETSQVA-------------------------------------------------- 3== QSKTEVSSVSSS------------------------------------------------ 4=p TSKTEVSSVS-------------------------------------------------- 5=p TSKTEVSSVS-------------------------------------------------- 6== SQVTQVSSVA-------------------------------------------------- 7== SQKTEVSTVSST------------------------------------------------ 8=opsin, ------------------------------------------------------------ 9== ASKTEVSSVS-------------------------------------------------- 10== ASKTEVSSVS-------------------------------------------------- 11== TSRTEVSSVSNS------------------------------------------------ 12== -SRTEVSSVSNS------------------------------------------------ 13== GPHADVTAAGLR------------------------------------------------ 14== ASTS-TTQEPQ------------------------------------------------- 15== ISTS-TTQEQQ------------------------------------------------- 16== QSTT-TQEQ-Q------------------------------------------------- 17== QSTT-TQEQTQ------------------------------------------------- 18== SQSNSTVAQDK------------------------------------------------- 19== NQSSNTQTQEK------------------------------------------------- 20== QSQA-TASEAE------------------------------------------------- 21== QSQA-TASEAE------------------------------------------------- 22== QSQA-TTSEAE------------------------------------------------- 23== ASDTETTSEAD------------------------------------------------- 24== PSDTETTSEAE------------------------------------------------- 25== STTSGTTTVTDN------------------------------------------------ 26== SEASATTTMEEK------------------------------------------------ 27== EEEV-VASERG--GESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQGY--PPQGYPPQGA 28== ETEI-PAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQGYAPPPQGYPPQG- 29== HEALKLAERPERP-----------------EFVLQNA----------------------- 30== HEALKLAERPERS-----------------EFVLQNS----------------------- 31=p HEALKLAERPERS-----------------EFVLQNS----------------------- 32== ------------------------------------------------------------ 33=p ------------------------------------------------------------ 34== ------------------------------------------------------------ 35=p ------------------------------------------------------------ 36== ------------------------------------------------------------ 1== --------------------------------------------PVSP-A--- 2== -----------------------------------------------P-A--- 3== --------------------------------------------QVSP-A--- 4=p -----------------------------------------------P-A--- 5=p -----------------------------------------------P-A--- 6== -----------------------------------------------PEK--- 7== --------------------------------------------QVGP-N--- 8=opsin, ----------------------------------------------------- 9== --------------------------------------------SVSP-A--- 10== --------------------------------------------SVSP-A--- 11== --------------------------------------------SVAP-A--- 12== --------------------------------------------SVSP-A--- 13== -------------------------------------------NKVMP-AHPV 14== --------------------------------------------QTTA-A--- 15== --------------------------------------------QTTA-A--- 16== --------------------------------------------QTTA-A--- 17== --------------------------------------------QTSA-A--- 18== -------------------------------------------------A--- 19== -------------------------------------------------S--- 20== ----------------------------------------------SK-A--- 21== ----------------------------------------------SK-A--- 22== ----------------------------------------------SK-A--- 23== ----------------------------------------------SK-A--- 24== ----------------------------------------------SK-D--- 25== -------------------------------------------EK-SN-A--- 26== -------------------------------------------PKIPE-A--- 27== YPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAYQ-A--- 28== YPP-QGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAYQ-A--- 29== -------------------------------------------DYCRKKGHDS 30== -------------------------------------------DHCGKKGHDT 31=p -------------------------------------------DHCGKKGHDT 32== ----------------------------------------------------- 33=p ----------------------------------------------------- 34== ----------------------------------------------------- 35=p ----------------------------------------------------- 36== -------------------------------------------------A-PQ