view test-data/mafft_fftns_result.aln @ 6:c5908940967d draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1527e05bcd748a2b3cef22e0e356697066a55635

>     1== M63632   1 Lampetra japonica rhodopsin <>[BBRC174,1125-1132'91]
--------------------------------MNGTE--------------GDNF-----
-------------YVP-----F-SNKTG----------LARSPYEYPQY-YLAEPWK---
--------------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMA
NLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIV
ICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPD
YYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE--------------
------------------------------------------------------AAAAQQ
------------------------------------------------------------
--------------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVA
FYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------
--GKNPLGDDE--SGASTSKTEVSSVS-TSPVS---------------------------
-----------------------------------PA-----------------------
--
>     2== U22180   1 rat opsin <rod>[J.Mol.Neurosci.5(3),207-209'94]
--------------------------------MNGTE--------------GPNF-----
-------------YVP-----F-SNITG----------VVRSPFEQPQY-YLAEPWQ---
--------------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA
DLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVV
VCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGID
YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE--------------
------------------------------------------------------AAAQQQ
------------------------------------------------------------
--------------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVA
MYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------
--GKNPLGDDE--ASATASKTE------TSQVA---------------------------
-----------------------------------PA-----------------------
--
>     3== M92038   1 chicken green sensitive cone opsin <retina>[PNAS89,5932-5936'9
--------------------------------MNGTE--------------GINF-----
-------------YVP-----M-SNKTG----------VVRSPFEYPQY-YLAEPWK---
--------------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA
DLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIV
VCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPD
YYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE--------------
------------------------------------------------------AAAQQQ
------------------------------------------------------------
--------------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVA
FWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------
--GKNPFGDEDVSSTVSQSKTEVSSVS-SSQVS---------------------------
-----------------------------------PA-----------------------
--
>     4=p A45229 opsin, green-sensitive (clone GFgr-1) - goldfish
--------------------------------MNGTE--------------GKNF-----
-------------YVP-----M-SNRTG----------LVRSPFEYPQY-YLAEPWQ---
--------------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVA
GTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV
VCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPD
YYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA--------------
------------------------------------------------------AAAQQQ
------------------------------------------------------------
--------------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVA
AWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------
--GKNPLGDDE-SSTVSTSKTEVSS------VS---------------------------
-----------------------------------PA-----------------------
--
>     5=p B45229 opsin, green-sensitive (clone GFgr-2) - goldfish
--------------------------------MNGTE--------------GNNF-----
-------------YVP-----L-SNRTG----------LVRSPFEYPQY-YLAEPWQ---
--------------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVA
GAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV
VCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPD
YYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA--------------
------------------------------------------------------AAAQQQ
------------------------------------------------------------
--------------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVA
AWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------
--GKNPLGDEE-SSTVSTSKTEVSS------VS---------------------------
-----------------------------------PA-----------------------
--
>     6== L11864   1 Carassius auratus blue cone opsin <retina>[Biochemistry32,208-
--------------------------------MKQVPEF------------HEDF-----
-------------YIPIP-LDI-NNLS------------AYSPFLVPQD-HLGNQGI---
--------------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIA
NLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLV
ICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPD
WYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL--------------
------------------------------------------------------AAKAQA
------------------------------------------------------------
--------------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFS
LWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------
--GKN-IEEDE--ASTSSQVTQVSS------VA---------------------------
-----------------------------------PEK----------------------
--
>     7== M13299   1 human BCP <>[Science232(4747),193-202'86]
--------------------------------MRKMS--------------EEEF-----
-------------YL------F-KNIS------------SVGPWDGPQY-HIAPVWA---
--------------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG
GFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV
ICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPD
WYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA--------------
------------------------------------------------------VAAQQQ
------------------------------------------------------------
--------------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFA
MYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------
--GKA-MTDES--DTCSSQKTEVSTVS-STQVG---------------------------
-----------------------------------PN-----------------------
--
>     8=opsin, greensensitive  human (fragment) S07060
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV
VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA--------------
------------------------------------------------------VAKQQK
------------------------------------------------------------
--------------------ESESTQK------AEKEVTRMVVVMVLAFC----------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
--
>     9== K03494   1 human GCP <>[Science232(4747),193-202'86]
--------------------------------MAQQWSLQRLAGRHPQDSYEDST-----
-------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV---
--------------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA
DLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMV
VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA--------------
------------------------------------------------------VAKQQK
------------------------------------------------------------
--------------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFA
CFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------
--GKK-VDDGS--ELSSASKTEVSSV---SSVS---------------------------
-----------------------------------PA-----------------------
--
>    10== Z68193   1 human Red Opsin <>[]
--------------------------------MAQQWSLQRLAGRHPQDSYEDST-----
-------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV---
--------------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA
DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV
VCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
VFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA--------------
------------------------------------------------------VAKQQK
------------------------------------------------------------
--------------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFA
CFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------
--GKK-VDDGS--ELSSASKTEVSSV---SSVS---------------------------
-----------------------------------PA-----------------------
--
>    11== M92036   1 Gecko gecko P521 <retina>[PNAS89,6841-6845'92]
--------------------------------MTEAWNVAVFAARRSRDD-DDTT-----
-------------RGSV--FTY-TNTNN-----------TRGPFEGPNY-HIAPRWV---
--------------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFV
DLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFV
VCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPD
VFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA--------------
------------------------------------------------------VAAQQK
------------------------------------------------------------
--------------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFV
SFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------
--GKK-VDDGS--EASTTSRTEVSSVS-NSSVA---------------------------
-----------------------------------PA-----------------------
--
>    12== M62903   1 chicken visual pigment <>[BBRC173,1212-1217'90]
--------------------------------MAA-WEAAFAARRRHEE--EDTT-----
-------------RDSV--FTY-TNSNN-----------TRGPFEGPNY-HIAPRWV---
--------------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVA
DLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFV
VCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPD
VFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA--------------
------------------------------------------------------VAAQQK
------------------------------------------------------------
--------------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFA
CFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------
--GKK-VDDGS--EVST-SRTEVSSVS-NSSVS---------------------------
-----------------------------------PA-----------------------
--
>    13== S75720   1 chicken P-opsin <>[Science267(5203),1502-1506'95]
--------------------------------MS-----------------SNSS-----
-------------QAP---------PNG-----------TPGPFDGPQWPYQAPQST---
--------------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVA
DLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVV
VCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPN
WYTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA--------------
------------------------------------------------------AAAQQK
------------------------------------------------------------
--------------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFA
LVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY---
-QPQR-TGKAS--PGTPGPHADVTAAGLRNKVM---------------------------
-----------------------------------PAHPV--------------------
--
>    14== M17718   1 D.melanogaster Rh3 <>[J.Neurosci.7,1550-1557'87]
----------MES--GNV-----------SSSLFGNVSTAL----------RPEA-----
-------------RLSA------ETRLL----------GWNVPPEELR--HIPEHWLTYP
E--------PPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFC
DFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNV
ITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFD
YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------
------------------------------------------------------LRDQAK
KMN---------------VESLRS------------------------------------
-------------------NVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMS
LIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---
---NE-KAPES----SAVASTSTTQEPQQTTAA---------------------------
------------------------------------------------------------
--
>    15== X65879   1 Drosophila pseudoobscura Dpse\Rh3 <>[Genetics132(1),193-204'92
----------MEY--HNV-----------SSVL-GNVSSVL----------RPDA-----
-------------RLSA------ESRLL----------GWNVPPDELR--HIPEHWLIYP
E--------PPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFC
DFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNV
ITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFD
YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------
------------------------------------------------------LRDQAK
KMN---------------VDSLRS------------------------------------
-------------------NVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMS
LIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---
---SE-KAPES----RAAISTSTTQEQQQTTAA---------------------------
------------------------------------------------------------
--
>    16== M17730   1 D.melanogaster Rh4 opsin <>[J.Neurosci.7,1558-1566'87]
----------ME-------------------PLCNASEPPL----------RPEA-----
-------------R-SSG---NGDLQFL----------GWNVPPDQIQ--YIPEHWLTQL
E--------PPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVF
DLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV
ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD
YLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA--------------
------------------------------------------------------LREQAK
KMN---------------VESLRS------------------------------------
-------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS
LIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---
---NE-KSGEI----SSAQSTTTQEQ-QQTTAA---------------------------
------------------------------------------------------------
--
>    17== X65880   1 Drosophila pseudoobscura Dpse\Rh4 <>[Genetics132(1),193-204'92
----------MD-------------------ALCNASEPPL----------RPEA-----
-------------RMSSG---SDELQFL----------GWNVPPDQIQ--YIPEHWLTQL
E--------PPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVF
DLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV
ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD
YLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA--------------
------------------------------------------------------LREQAK
KMN---------------VESLRS------------------------------------
-------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS
LIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---
---NE-KSGEA----SSAQSTTTQEQTQQTSAA---------------------------
------------------------------------------------------------
--
>    18== D50584   1 Hemigrapsus sanguineus opsin BcRh2 <compound eye>[J.Exp.Biol.1
--------------------------------MTNATGPQM----------AYYG-----
-------------AASMD-FGYPEGVSI----------VDFVRPEIKP--YVHQHWYNYP
P--------VNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALS
DLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNI
ICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYD
YLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA--------------
------------------------------------------------------MRAQAK
KMN---------------VSTLRS------------------------------------
--------------------NEADAQR------AEIRIAKTALVNVSLWFICWTPYALIS
LKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV---
---HE-TETKS-NDDSQSNSTVAQDKA---------------------------------
------------------------------------------------------------
--
>    19== D50583   1 Hemigrapsus sanguineus opsin BcRh1 <compound eye>[J.Exp.Biol.1
--------------------------------MANVTGPQM----------AFYG-----
-------------SGAAT-FGYPEGMTV----------ADFVPDRVKH--MVLDHWYNYP
P--------VNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALS
DLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNI
ICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYD
YFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA--------------
------------------------------------------------------MRAQAK
KMN---------------VTNLRS------------------------------------
--------------------NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAIT
IQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV---
---HE-KDPND-VEENQSSNTQTQEKS---------------------------------
------------------------------------------------------------
--
>    20== K02320   1 D.melanogaster opsin <>[Cell40,851-858'85]
---------------MES-----------FAVAAAQLGPHF----------APLS-----
------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP
A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
IVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSCGID
YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
------------------------------------------------------MREQAK
KMN---------------VKSLRS------------------------------------
--------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN
CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
---GK-VDDGK-SSDAQSQATASEAESKA-------------------------------
------------------------------------------------------------
--
>    21== K02315   1 D.melanogaster ninaE <>[Cell40,839-850'85]
---------------MES-----------FAVAAAQLGPHF----------APLS-----
------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP
A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
IVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGID
YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
------------------------------------------------------MREQAK
KMN---------------VKSLRS------------------------------------
--------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN
CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
---GK-VDDGK-SSDAQSQATASEAESKA-------------------------------
------------------------------------------------------------
--
>    22== X65877   1 Drosophila pseudoobscura Dpse\ninaE <>[Genetics132(1),193-204'
---------------MDS-----------FAAVATQLGPQF----------AAPS-----
------------------------NGSV----------VDKVTPDMAH--LISPYWDQFP
A--------MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
IVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGID
YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
------------------------------------------------------MREQAK
KMN---------------VKSLRS------------------------------------
--------------------SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVIN
CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
---GK-VDDGK-SSEAQSQATTSEAESKA-------------------------------
------------------------------------------------------------
--
>    23== M12896   1 D.melanogaster Rh2 <>[Cell44,705-710'86]
----------MERSHLPE-----------TPFDLAHSGPRF----------QAQS-----
-------------SG---------NGSV----------LDNVLPDMAH--LVNPYWSRFA
P--------MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS
DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNV
IVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSID
YMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA--------------
------------------------------------------------------MREQAK
KMN---------------VKSLRS------------------------------------
--------------------SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVIC
YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF---
---GN-TDEPKPDAPASDTETTSEADSKA-------------------------------
------------------------------------------------------------
--
>    24== X65878   1 Drosophila pseudoobscura Dpse\Rh2 <>[Genetics132(1),193-204'92
----------MERSLLPE-----------PPLAMALLGPRF----------EAQT-----
-------------GG---------NRSV----------LDNVLPDMAP--LVNPHWSRFA
P--------MDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS
DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNV
IVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSID
YMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA--------------
------------------------------------------------------MRDQAK
KMN---------------VKSLRS------------------------------------
--------------------SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIIC
YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC---
---GT-TDEPKPDAPPSDTETTSEAESKD-------------------------------
------------------------------------------------------------
--
>    25== U26026   1 Apis mellifera long-wavelength rhodopsin <>[]
--------------------------------MIAVSGPSY----------EAFS-----
-------------YGGQARF---NNQTV----------VDKVPPDMLH--LIDANWYQYP
P--------LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAIS
NFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNV
IVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTD
YFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN--------------
------------------------------------------------------MREQAK
KMN---------------VASLRS------------------------------------
--------------------SENQNTS------AECKLAKVALMTISLWFMAWTPYLVIN
FSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC---
----A-AEPSS-DAVSTTSGTTTVTDNEKSNA----------------------------
------------------------------------------------------------
--
>    26== L03781   1 Limulus polyphemus opsin <>[PNAS90,6150-6154'93]
----------------------------------MANQLSY----------SSLG-----
-------------WPYQP------NASV----------VDTMPKEMLY--MIHEHWYAFP
P--------MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFS
DFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNV
IVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVD
YLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ--------------
------------------------------------------------------LREQAK
KMN---------------VASLRA------------------------------------
-------------------NADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIIS
WAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC---
---GS-GESGS-DVKSEASATTTMEEKPKIPEA---------------------------
------------------------------------------------------------
--
>    27== X07797   1 Octopus dofleini rhodopsin <>[FEBS232(1),69-72'88]
---------------------------------------MV----------ESTT-----
-------------LVNQT-WWY--NPTV----------D------------IHPHWAKFD
P--------IPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMS
DLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNV
IGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFD
YLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE--------------
------------------------------------------------------MAAMAK
RLN---------------AKELR-------------------------------------
--------------------KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIA
LLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQ
FDEKE-CEDAN-DAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQG
Y--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAY
QA
>    28== X70498   1 Todarodes pacificus rhodopsin <retina>[FEBS317(1-2),5-11'93]
----------------------------------------M----------GRDL-----
-------------RDNET-WWY--NPSI----------V------------VHPHWREFD
Q--------VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFS
DFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNV
IGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFD
YIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE--------------
------------------------------------------------------MAAMAK
RLN---------------AKELR-------------------------------------
--------------------KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVA
LLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQ
FDDKE-TEDDK-DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQG
YAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAY
QA
>    29== L21195   1 human serotonin 5-HT7 receptor protein <placenta and fetal bra
---------MMDVNSSGRPDLYGHLRSF-LLPEVGRGLPDL----------SPDGGADPV
AGSWAPHLLS---EVTAS-----PAPTW------------DAPPDNAS--GCGEQIN---
---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALA
DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
--------------------------------------------P----GFPRVEPDSVI
ALNG--------------IVKLQ----------------------KEVEECANLSR----
--------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
TARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------
---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
-----------------------------------PERPEFVL-QNADYCRKKGHDS---
--
>    30== L15228   1 rat 5HT-7 serotonin receptor <>[JBC268,18200-18204'93]
------------------------------------------------------------
----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN---
---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA
DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
--------------------------------------------P----GFPRVQPESVI
SLNG--------------VVKLQ----------------------KEVEECANLSR----
--------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQC------
---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
-----------------------------------PERSEFVL-QNSDHCGKKGHDT---
--
>    31=p A47425 serotonin receptor 5HT-7 - rat
------------------------------------------------------------
----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN---
---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA
DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
--------------------------------------------P----GFPRVQPESVI
SLNG--------------VVKLQ----------------------KEVEECANLSR----
--------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------
---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
-----------------------------------PERSEFVL-QNSDHCGKKGHDT---
--
>    32== M83181   1 human serotonin receptor <>[JBC267(11),7553-7562'92]
----------MDVLSPG------------QGNNTTSPPAPF----------ETGG-----
-------------NTTGI-----SDVTV--------------------------------
------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT
DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA
ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD
H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------
-------------------------TVKKVEKTGADTRHGASPAP---------QPKKS-
-VNGESGSRNWRL-----GVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPL
PSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA
LVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------
---KF-CRQ---------------------------------------------------
------------------------------------------------------------
--
>    33=p A35181 serotonin receptor class 1A - rat
----------MDVFSFG------------QGNNTTASQEPF----------GTGG-----
-------------NVTSI-----SDVTF--------------------------------
------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT
DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA
ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD
H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------
-------------------------TVRKVEKKGAGTSLGTSSAP---------PPKKS-
-LNGQPGSGDWRR-----CAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPL
PSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA
LVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------
---KF-CRR---------------------------------------------------
------------------------------------------------------------
--
>    34== L06803   1 Lymnaea stagnalis serotonin receptor <>[PNAS90,11-15'93]
MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG-----
-------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT
DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA
DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA
VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD
K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE
TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN
GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN
DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA
LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------
---KY-RRGHR-------------------------------------------------
------------------------------------------------------------
--
>    35=p A47174 serotonin receptor, 5HTlym receptor - great pond snail
MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG-----
-------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT
DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA
DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA
VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD
K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE
TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN
GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN
DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA
LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------
---KY-RRGHR-------------------------------------------------
------------------------------------------------------------
--
>    36== X95604   1 Bombyx mori serotonin receptor <antennae>[InsectBiochem.Mol.Bi
-MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGW----------EPNW-----
-------------NVTVV-----PNTTW---------WQASAPFDTPA--ALVRAAAK--
------------------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVA
DLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWA
VTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQD
V----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIR---------------
------------------------------RRRGATARGGVGPPP---------VPAGGA
LVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTS---PEKQSCANGLEADPP
TTGYGAVAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLA
ILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCG------
---RR-VRRRR--A----------------------------------------------
-----------------------------------PQ-----------------------
--