view test-data/mafft_nwns_result.aln @ 6:c5908940967d draft

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/mafft commit 1527e05bcd748a2b3cef22e0e356697066a55635
author rnateam
date Sat, 11 Nov 2017 15:06:34 -0500
parents 15974dd17515
children aaefa93c2dd2
line wrap: on
line source

CLUSTAL format alignment by MAFFT NW-NS-2 (v7.221)


1==             --------------------------------MNGTE--------------GDNF-----
2==             --------------------------------MNGTE--------------GPNF-----
3==             --------------------------------MNGTE--------------GINF-----
4=p             --------------------------------MNGTE--------------GKNF-----
5=p             --------------------------------MNGTE--------------GNNF-----
6==             --------------------------------MKQVPEF------------HEDF-----
7==             --------------------------------MRKMS--------------EEEF-----
8=opsin,        ------------------------------------------------------------
9==             --------------------------------MAQQWSLQRLAGRHPQDSYEDST-----
10==            --------------------------------MAQQWSLQRLAGRHPQDSYEDST-----
11==            --------------------------------MTEAWNVAVFAARRSRDD-DDTT-----
12==            --------------------------------MAA-WEAAFAARRRHEE--EDTT-----
13==            --------------------------------MS-----------------SNSS-----
14==            ----------MES--GNV-----------SSSLFGNVSTAL----------RPEA-----
15==            ----------MEY--HNV-----------SSVL-GNVSSVL----------RPDA-----
16==            ----------ME-------------------PLCNASEPPL----------RPEA-----
17==            ----------MD-------------------ALCNASEPPL----------RPEA-----
18==            --------------------------------MTNATGPQM----------AYYG-----
19==            --------------------------------MANVTGPQM----------AFYG-----
20==            ---------------MES-----------FAVAAAQLGPHF----------APLS-----
21==            ---------------MES-----------FAVAAAQLGPHF----------APLS-----
22==            ---------------MDS-----------FAAVATQLGPQF----------AAPS-----
23==            ----------MERSHLPE-----------TPFDLAHSGPRF----------QAQS-----
24==            ----------MERSLLPE-----------PPLAMALLGPRF----------EAQT-----
25==            --------------------------------MIAVSGPSY----------EAFS-----
26==            ----------------------------------MANQLSY----------SSLG-----
27==            ---------------------------------------MV----------ESTT-----
28==            ----------------------------------------M----------GRDL-----
29==            ---------MMDVNSSGRPDLYGHLRSF-LLPEVGRGLPDL----------SPDGGADPV
30==            ------------------------------------------------------------
31=p            ------------------------------------------------------------
32==            ----------MDVLSPG------------QGNNTTSPPAPF----------ETGG-----
33=p            ----------MDVFSFG------------QGNNTTASQEPF----------GTGG-----
34==            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG-----
35=p            MANFTFGDLALDVARMG-----GLASTPSGLRSTGLTTPGL----------SPTG-----
36==            -MEGAEGQEELDWEAL-------YLRLP--LQNCSWNSTGW----------EPNW-----
                                                                            

1==             -------------YVP-----F-SNKTG----------LARSPYEYPQY-YLAEPWK---
2==             -------------YVP-----F-SNITG----------VVRSPFEQPQY-YLAEPWQ---
3==             -------------YVP-----M-SNKTG----------VVRSPFEYPQY-YLAEPWK---
4=p             -------------YVP-----M-SNRTG----------LVRSPFEYPQY-YLAEPWQ---
5=p             -------------YVP-----L-SNRTG----------LVRSPFEYPQY-YLAEPWQ---
6==             -------------YIPIP-LDI-NNLS------------AYSPFLVPQD-HLGNQGI---
7==             -------------YL------F-KNIS------------SVGPWDGPQY-HIAPVWA---
8=opsin,        ------------------------------------------------------------
9==             -------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV---
10==            -------------QSSI--FTY-TNSNS-----------TRGPFEGPNY-HIAPRWV---
11==            -------------RGSV--FTY-TNTNN-----------TRGPFEGPNY-HIAPRWV---
12==            -------------RDSV--FTY-TNSNN-----------TRGPFEGPNY-HIAPRWV---
13==            -------------QAP---------PNG-----------TPGPFDGPQWPYQAPQST---
14==            -------------RLSA------ETRLL----------GWNVPPEELR--HIPEHWLTYP
15==            -------------RLSA------ESRLL----------GWNVPPDELR--HIPEHWLIYP
16==            -------------R-SSG---NGDLQFL----------GWNVPPDQIQ--YIPEHWLTQL
17==            -------------RMSSG---SDELQFL----------GWNVPPDQIQ--YIPEHWLTQL
18==            -------------AASMD-FGYPEGVSI----------VDFVRPEIKP--YVHQHWYNYP
19==            -------------SGAAT-FGYPEGMTV----------ADFVPDRVKH--MVLDHWYNYP
20==            ------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP
21==            ------------------------NGSV----------VDKVTPDMAH--LISPYWNQFP
22==            ------------------------NGSV----------VDKVTPDMAH--LISPYWDQFP
23==            -------------SG---------NGSV----------LDNVLPDMAH--LVNPYWSRFA
24==            -------------GG---------NRSV----------LDNVLPDMAP--LVNPHWSRFA
25==            -------------YGGQARF---NNQTV----------VDKVPPDMLH--LIDANWYQYP
26==            -------------WPYQP------NASV----------VDTMPKEMLY--MIHEHWYAFP
27==            -------------LVNQT-WWY--NPTV----------D------------IHPHWAKFD
28==            -------------RDNET-WWY--NPSI----------V------------VHPHWREFD
29==            AGSWAPHLLS---EVTAS-----PAPTW------------DAPPDNAS--GCGEQIN---
30==            ----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN---
31=p            ----MPHLLSGFLEVTAS-----PAPTW------------DAPPDNVS--GCGEQIN---
32==            -------------NTTGI-----SDVTV--------------------------------
33=p            -------------NVTSI-----SDVTF--------------------------------
34==            -------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT
35=p            -------------LVTSD-----FNDSYGLTGQFINGSHSSRSRDNAS--ANDTSATNMT
36==            -------------NVTVV-----PNTTW---------WQASAPFDTPA--ALVRAAAK--
                                                                            

1==             --------------YSALAAYMFFLILVGFPVNFLTLFVTVQHKKLRTPLNYILLNLAMA
2==             --------------FSMLAAYMFLLIVLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVA
3==             --------------YRLVCCYIFFLISTGLPINLLTLLVTFKHKKLRQPLNYILVNLAVA
4=p             --------------FKILALYLFFLMSMGLPINGLTLVVTAQHKKLRQPLNFILVNLAVA
5=p             --------------FKLLAVYMFFLICLGLPINGLTLICTAQHKKLRQPLNFILVNLAVA
6==             --------------FMAMSVFMFFIFIGGASINILTILCTIQFKKLRSHLNYILVNLSIA
7==             --------------FYLQAAFMGTVFLIGFPLNAMVLVATLRYKKLRQPLNYILVNVSFG
8=opsin,        ------------------------------------------------------------
9==             --------------YHLTSVWMIFVVIASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA
10==            --------------YHLTSVWMIFVVTASVFTNGLVLAATMKFKKLRHPLNWILVNLAVA
11==            --------------YNLVSFFMIIVVIASCFTNGLVLVATAKFKKLRHPLNWILVNLAFV
12==            --------------YNLTSVWMIFVVAASVFTNGLVLVATWKFKKLRHPLNWILVNLAVA
13==            --------------YVGVAVLMGTVVACASVVNGLVIVVSICYKKLRSPLNYILVNLAVA
14==            E--------PPESMNYLLGTLYIFFTLMSMLGNGLVIWVFSAAKSLRTPSNILVINLAFC
15==            E--------PPESMNYLLGTLYIFFTVISMIGNGLVMWVFSAAKSLRTPSNILVINLAFC
16==            E--------PPASMHYMLGVFYIFLFCASTVGNGMVIWIFSTSKSLRTPSNMFVLNLAVF
17==            E--------PPASMHYMLGVFYIFLFFASTLGNGMVIWIFSTSKSLRTPSNMFVLNLAVF
18==            P--------VNPMWHYLLGVIYLFLGTVSIFGNGLVIYLFNKSAALRTPANILVVNLALS
19==            P--------VNPMWHYLLGVVYLFLGVISIAGNGLVIYLYMKSQALKTPANMLIVNLALS
20==            A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
21==            A--------MDPIWAKILTAYMIMIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
22==            A--------MDPIWAKILTAYMIIIGMISWCGNGVVIYIFATTKSLRTPANLLVINLAIS
23==            P--------MDPMMSKILGLFTLAIMIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS
24==            P--------MDPTMSKILGLFTLVILIISCCGNGVVVYIFGGTKSLRTPANLLVLNLAFS
25==            P--------LNPMWHGILGFVIGMLGFVSAMGNGMVVYIFLSTKSLRTPSNLFVINLAIS
26==            P--------MNPLWYSILGVAMIILGIICVLGNGMVIYLMMTTKSLRTPTNLLVVNLAFS
27==            P--------IPDAVYYSVGIFIGVVGIIGILGNGVVIYLFSKTKSLQTPANMFIINLAMS
28==            Q--------VPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFS
29==            ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVCFVKKLRQPSNYLIVSLALA
30==            ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA
31=p            ---------YGRVEKVVIGSILTLITLLTIAGNCLVVISVSFVKKLRQPSNYLIVSLALA
32==            ------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT
33=p            ------------SYQVITSLLLGTLIFCAVLGNACVVAAIALERSLQNVANYLIGSLAVT
34==            DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA
35=p            DDRYWSLTVYSHEHLVLTSVILGLFVLCCIIGNCFVIAAVMLERSLHNVANYLILSLAVA
36==            ------------------AVVLGLLILATVVGNVFVIAAILLERHLRSAANNLILSLAVA
                                                                            

1==             NLFMVLFG-FTVTMYTSMN-GYFV--FGPTMCSIEGFFATLGGEVALWSLVVLAIERYIV
2==             DLFMVFGG-FTTTLYTSLH-GYFV--FGPTGCNLEGFFATLGGEIGLWSLVVLAIERYVV
3==             DLFMACFG-FTVTFYTAWN-GYFV--FGPVGCAVEGFFATLGGQVALWSLVVLAIERYIV
4=p             GTIMVCFG-FTVTFYTAIN-GYFV--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV
5=p             GAIMVCFG-FTVTFYTAIN-GYFA--LGPTGCAVEGFMATLGGEVALWSLVVLAIERYIV
6==             NLFVAIFG-SPLSFYSFFN-RYFI--FGATACKIEGFLATLGGMVGLWSLAVVAFERWLV
7==             GFLLCIFS-VFPVFVASCN-GYFV--FGRHVCALEGFLGTVAGLVTGWSLAFLAFERYIV
8=opsin,        DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV
9==             DLAETVIA-STISVVNQVY-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWMV
10==            DLAETVIA-STISIVNQVS-GYFV--LGHPMCVLEGYTVSLCGITGLWSLAIISWERWLV
11==            DLVETLVA-STISVFNQIF-GYFI--LGHPLCVIEGYVVSSCGITGLWSLAIISWERWFV
12==            DLGETVIA-STISVINQIS-GYFI--LGHPMCVVEGYTVSACGITALWSLAIISWERWFV
13==            DLLVTLCG-SSVSLSNNIN-GFFV--FGRRMCELEGFMVSLTGIVGLWSLAILALERYVV
14==            DFMMMVK--TPIFIYNSFH-QGYA--LGHLGCQIFGIIGSYTGIAAGATNAFIAYDRFNV
15==            DFMMMIK--TPIFIYNSFH-QGYA--LGHLGCQIFGVIGSYTGIAAGATNAFIAYDRYNV
16==            DLIMCLK--APIF--NSFH-RGFAIYLGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV
17==            DLIMCLK--APIFIYNSFH-RGFA--LGNTWCQIFASIGSYSGIGAGMTNAAIGYDRYNV
18==            DLIMLTTN-VPFFTYNCFSGGVWM--FSPQYCEIYACLGAITGVCSIWLLCMISFDRYNI
19==            DLIMLTTN-FPPFCYNCFSGGRWM--FSGTYCEIYAALGAITGVCSIWTLCMISFDRYNI
20==            DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
21==            DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
22==            DFGIMITN-TPMMGINLYF-ETWV--LGPMMCDIYAGLGSAFGCSSIWSMCMISLDRYQV
23==            DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAGCGSLFGCVSIWSMCMIAFDRYNV
24==            DFCMMASQ-SPVMIINFYY-ETWV--LGPLWCDIYAACGSLFGCVSIWSMCMIAFDRYNV
25==            NFLMMFCM-SPPMVINCYY-ETWV--LGPLFCQIYAMLGSLFGCGSIWTMTMIAFDRYNV
26==            DFCMMAFM-MPTMTSNCFA-ETWI--LGPFMCEVYGMAGSLFGCASIWSMVMITLDRYNV
27==            DLSFSAINGFPLKTISAFM-KKWI--FGKVACQLYGLLGGIFGFMSINTMAMISIDRYNV
28==            DFTFSLVNGFPLMTISCFL-KKWI--FGFAACKVYGFIGGIFGFMSIMTMAMISIDRYNV
29==            DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
30==            DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
31=p            DLSVAVAV-MPFVSVTDLIGGKWI--FGHFFCNVFIAMDVMCCTASIMTLCVISIDRYLG
32==            DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA
33=p            DLMVSVLV-LPMAALYQVL-NKWT--LGQVTCDLFIALDVLCCTSSILHLCAIALDRYWA
34==            DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA
35=p            DLMVAVLV-MPLSVVSEIS-KVWF--LHSEVCDMWISVDVLCCTASILHLVAIAMDRYWA
36==            DLLVACLV-MPLGAVYEVV-QRWT--LGPELCDMWTSGDVLCCTASILHLVAIALDRYWA
                .                     :   :    * :                  :  :*:  

1==             ICKPMGN-FRFGNTHAIMGVAFTWIMALAC-AAPPLVG-W-----SRYIPEGMQCSCGPD
2==             VCKPMSN-FRFGENHAIMGVAFTWVMALAC-AAPPLVG-W-----SRYIPEGMQCSCGID
3==             VCKPMGN-FRFSATHAMMGIAFTWVMAFSC-AAPPLFG-W-----SRYMPEGMQCSCGPD
4=p             VCKPMGS-FKFSSSHAFAGIAFTWVMALAC-AAPPLFG-W-----SRYIPEGMQCSCGPD
5=p             VCKPMGS-FKFSSTHASAGIAFTWVMAMAC-AAPPLVG-W-----SRYIPEGIQCSCGPD
6==             ICKPLGN-FTFKTPHAIAGCILPWISALAA-SLPPLFG-W-----SRYIPEGLQCSCGPD
7==             ICKPFGN-FRFSSKHALTVVLATWTIGIGV-SIPPFFG-W-----SRFIPEGLQCSCGPD
8=opsin,        VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
9==             VCKPFGN-VRFDAKLAIVGIAFSWIWAAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
10==            VCKPFGN-VRFDAKLAIVGIAFSWIWSAVW-TAPPIFG-W-----SRYWPHGLKTSCGPD
11==            VCKPFGN-IKFDSKLAIIGIVFSWVWAWGW-SAPPIFG-W-----SRYWPHGLKTSCGPD
12==            VCKPFGN-IKFDGKLAVAGILFSWLWSCAW-TAPPIFG-W-----SRYWPHGLKTSCGPD
13==            VCKPLGD-FQFQRRHAVSGCAFTWGWALLW-SAPPLLG-W-----SSYVPEGLRTSCGPN
14==            ITRPMEG--KMTHGKAIAMIIFIYMYATPW-VVACYTETW-----GRFVPEGYLTSCTFD
15==            ITRPMEG--KMTHGKAIAMIIFIYLYATPW-VVACYTESW-----GRFVPEGYLTSCTFD
16==            ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD
17==            ITKPMNR--NMTFTKAVIMNIIIWLYCTPW-VVLPLTQFW-----DRFVPEGYLTSCSFD
18==            ICNGFNG-PKLTTGKAVVFALISWVIAIGC-ALPPFFG-W-----GNYILEGILDSCSYD
19==            ICNGFNG-PKLTQGKATFMCGLAWVISVGW-SLPPFFG-W-----GSYTLEGILDSCSYD
20==            IVKGMAG-RPMTIPLALGKM---------------------------YVPEGNLTSCGID
21==            IVKGMAG-RPMTIPLALGKIAYIWFMSSIW-CLAPAFG-W-----SRYVPEGNLTSCGID
22==            IVKGMAG-RPMTIPLALGKIAYIWFMSTIWCCLAPVFG-W-----SRYVPEGNLTSCGID
23==            IVKGING-TPMTIKTSIMKILFIWMMAVFW-TVMPLIG-W-----SAYVPEGNLTACSID
24==            IVKGING-TPMTIKTSIMKIAFIWMMAVFW-TIMPLIG-W-----SSYVPEGNLTACSID
25==            IVKGLSG-KPLSINGALIRIIAIWLFSLGW-TIAPMFG-W-----NRYVPEGNMTACGTD
26==            IVRGMAA-APLTHKKATLLLLFVWIWSGGW-TILPFFG-W-----SRYVPEGNLTSCTVD
27==            IGRPMAASKKMSHRRAFLMIIFVWMWSIVW-SVGPVFN-W-----GAYVPEGILTSCSFD
28==            IGRPMAASKKMSHRRAFIMIIFVWLWSVLW-AIGPIFG-W-----GAYTLEGVLCNCSFD
29==            ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
30==            ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
31=p            ITRPLTYPVRQNGKCMAKMILSVWLLSASI-TLPPLFG-W-----AQNVNDDKVCLISQD
32==            ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD
33=p            ITDPIDYVNKRTPRRAAALISLTWLIGFLI-SIPPMLG-WRTPEDRSDPDA---CTISKD
34==            VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD
35=p            VTS-IDYIRRRSARRILLMIMVVWIVALFI-SIPPLFG-WRDP--NNDPDKTGTCIISQD
36==            VTN-IDYIHASTAKRVGMMIACVWTVSFFV-CIAQLLG-WKDPDWNQRVSEDLRCVVSQD
                :   :                                                      :

1==             YYTLNPNFNNESYVVYMFVVHFLVPFVIIFFCYGRLLCTV----KE--------------
2==             YYTLKPEVNNESFVIYMFVVHFTIPMIVIFFCYGQLVFTV----KE--------------
3==             YYTHNPDYHNESYVLYMFVIHFIIPVVVIFFSYGRLICKV----RE--------------
4=p             YYTLNPDYNNESYVIYMFVCHFILPVAVIFFTYGRLVCTV----KA--------------
5=p             YYTLNPEYNNESYVLYMFICHFILPVTIIFFTYGRLVCTV----KA--------------
6==             WYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL----KL--------------
7==             WYTVGTKYRSESYTWFLFIFCFIVPLSLICFSYTQLLRAL----KA--------------
8=opsin,        VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA--------------
9==             VFSGSSYPGVQSYMIVLMVTCCITPLSIIVLCYLQVWLAI----RA--------------
10==            VFSGSSYPGVQSYMIVLMVTCCIIPLAIIMLCYLQVWLAI----RA--------------
11==            VFSGSVELGCQSFMLTLMITCCFLPLFIIIVCYLQVWMAI----RA--------------
12==            VFSGSSDPGVQSYMVVLMVTCCFFPLAIIILCYLQVWLAI----RA--------------
13==            WYTGGSNN--NSYILSLFVTCFVLPLSLILFSYTNLLLTL----RA--------------
14==            YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------
15==            YLT--DNFDTRLFVACIFFFSFVCPTTMITYYYSQIVGHVFSHEKA--------------
16==            YLS--DNFDTRLFVGTIFFFSFVCPTLMILYYYSQIVGHVFSHEKA--------------
17==            YLS--DNFDTRLFVGTIFLFSFVVPTLMILYYYSQIVGHVFNHEKA--------------
18==            YLT--QDFNTFSYNIFIFVFDYFLPAAIIVFSYVFIVKAIFAHEAA--------------
19==            YFT--RDMNTITYNICIFIFDFFLPASVIVFSYVFIVKAIFAHEAA--------------
20==            YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
21==            YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
22==            YLE--RDWNPRSYLIFYSIFVYYIPLFLICYSYWFIIAAVSAHEKA--------------
23==            YMT--RMWNPRSYLITYSLFVYYTPLFLICYSYWFIIAAVAAHEKA--------------
24==            YMT--RQWNPRSYLITYSLFVYYTPLFMICYSYWFIIATVAAHEKA--------------
25==            YFN--RGLLSASYLVCYGIWVYFVPLFLIIYSYWFIIQAVAAHEKN--------------
26==            YLT--KDWSSASYVVIYGLAVYFLPLITMIYCYFFIVHAVAEHEKQ--------------
27==            YLS--TDPSTRSFILCMYFCGFMLPIIIIAFCYFNIVMSVSNHEKE--------------
28==            YIS--RDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKE--------------
29==            F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
30==            F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
31=p            F----------GYTIYSTAVAFYIPMSVMLFMYYQIYKAARKSAAKHKF-----------
32==            H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------
33=p            H----------GYTIYSTFGAFYIPLLLMLVLYGRIFRAARFRIRK--------------
34==            K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE
35=p            K----------GYTIFSTVGAFYLPMLVMMIIYIRIWLVARSRIRKDKFQMTKARLKTEE
36==            V----------GYQIFATASSFYVPVLIILILYWRIYQTARKRIR---------------
                                        *   :   *  :                        

1==             ------------------------------------------------------AAAAQQ
2==             ------------------------------------------------------AAAQQQ
3==             ------------------------------------------------------AAAQQQ
4=p             ------------------------------------------------------AAAQQQ
5=p             ------------------------------------------------------AAAQQQ
6==             ------------------------------------------------------AAKAQA
7==             ------------------------------------------------------VAAQQQ
8=opsin,        ------------------------------------------------------VAKQQK
9==             ------------------------------------------------------VAKQQK
10==            ------------------------------------------------------VAKQQK
11==            ------------------------------------------------------VAAQQK
12==            ------------------------------------------------------VAAQQK
13==            ------------------------------------------------------AAAQQK
14==            ------------------------------------------------------LRDQAK
15==            ------------------------------------------------------LRDQAK
16==            ------------------------------------------------------LREQAK
17==            ------------------------------------------------------LREQAK
18==            ------------------------------------------------------MRAQAK
19==            ------------------------------------------------------MRAQAK
20==            ------------------------------------------------------MREQAK
21==            ------------------------------------------------------MREQAK
22==            ------------------------------------------------------MREQAK
23==            ------------------------------------------------------MREQAK
24==            ------------------------------------------------------MRDQAK
25==            ------------------------------------------------------MREQAK
26==            ------------------------------------------------------LREQAK
27==            ------------------------------------------------------MAAMAK
28==            ------------------------------------------------------MAAMAK
29==            --------------------------------------------P----GFPRVEPDSVI
30==            --------------------------------------------P----GFPRVQPESVI
31=p            --------------------------------------------P----GFPRVQPESVI
32==            -------------------------TVKKVEKTGADTRHGASPAP---------QPKKS-
33=p            -------------------------TVRKVEKKGAGTSLGTSSAP---------PPKKS-
34==            TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN
35=p            TTLVASPKTEYSVVSDCNGCNSPDSTTEKKKRRAPFKSYGCSPRPERKKNRAKKLPENAN
36==            ------------------------------RRRGATARGGVGPPP---------VPAGGA
                                                                            

1==             ------------------------------------------------------------
2==             ------------------------------------------------------------
3==             ------------------------------------------------------------
4=p             ------------------------------------------------------------
5=p             ------------------------------------------------------------
6==             ------------------------------------------------------------
7==             ------------------------------------------------------------
8=opsin,        ------------------------------------------------------------
9==             ------------------------------------------------------------
10==            ------------------------------------------------------------
11==            ------------------------------------------------------------
12==            ------------------------------------------------------------
13==            ------------------------------------------------------------
14==            KMN---------------VESLRS------------------------------------
15==            KMN---------------VDSLRS------------------------------------
16==            KMN---------------VESLRS------------------------------------
17==            KMN---------------VESLRS------------------------------------
18==            KMN---------------VSTLRS------------------------------------
19==            KMN---------------VTNLRS------------------------------------
20==            KMN---------------VKSLRS------------------------------------
21==            KMN---------------VKSLRS------------------------------------
22==            KMN---------------VKSLRS------------------------------------
23==            KMN---------------VKSLRS------------------------------------
24==            KMN---------------VKSLRS------------------------------------
25==            KMN---------------VASLRS------------------------------------
26==            KMN---------------VASLRA------------------------------------
27==            RLN---------------AKELR-------------------------------------
28==            RLN---------------AKELR-------------------------------------
29==            ALNG--------------IVKLQ----------------------KEVEECANLSR----
30==            SLNG--------------VVKLQ----------------------KEVEECANLSR----
31=p            SLNG--------------VVKLQ----------------------KEVEECANLSR----
32==            -VNGESGSRNWRL-----GVESKAGGALCANGAVRQGDDGAALEVIEVHRVGNSKEHLPL
33=p            -LNGQPGSGDWRR-----CAENRAVGTPCTNGAVRQGDDEATLEVIEVHRVGNSKEHLPL
34==            GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN
35=p            GVNSNSSS----------SERLKQIQIETAEAFANGCAEEASIAMLERQ-CNNGKKISSN
36==            LVAGGGSGGIAAAVVAVIGRPLPTISETTTTGFTNVSSNNTS---PEKQSCANGLEADPP
                                                                            

1==             --------------------ESASTQK------AEKEVTRMVVLMVIGFLVCWVPYASVA
2==             --------------------ESATTQK------AEKEVTRMVIIMVIFFLICWLPYASVA
3==             --------------------ESATTQK------AEKEVTRMVILMVLGFMLAWTPYAVVA
4=p             --------------------DSASTQK------AEREVTKMVILMVFGFLIAWTPYATVA
5=p             --------------------DSASTQK------AEREVTKMVILMVLGFLVAWTPYATVA
6==             --------------------DSASTQK------AEREVTKMVVVMVLGFLVCWAPYASFS
7==             --------------------ESATTQK------AEREVSRMVVVMVGSFCVCYVPYAAFA
8=opsin,        --------------------ESESTQK------AEKEVTRMVVVMVLAFC----------
9==             --------------------ESESTQK------AEKEVTRMVVVMVLAFCFCWGPYAFFA
10==            --------------------ESESTQK------AEKEVTRMVVVMIFAYCVCWGPYTFFA
11==            --------------------ESESTQK------AEREVSRMVVVMIVAFCICWGPYASFV
12==            --------------------ESESTQK------AEKEVSRMVVVMIVAYCFCWGPYTFFA
13==            --------------------EADTTQR------AEREVTRMVIVMVMAFLLCWLPYSTFA
14==            -------------------NVDKNKET------AEIRIAKAAITICFLFFCSWTPYGVMS
15==            -------------------NVDKSKEA------AEIRIAKAAITICFLFFASWTPYGVMS
16==            -------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS
17==            -------------------NVDKSKET------AEIRIAKAAITICFLFFVSWTPYGVMS
18==            --------------------NEADAQR------AEIRIAKTALVNVSLWFICWTPYALIS
19==            --------------------NEAETQR------AEIRIAKTALVNVSLWFICWTPYAAIT
20==            --------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN
21==            --------------------SEDAEKS------AEGKLAKVALVTITLWFMAWTPYLVIN
22==            --------------------SEDADKS------AEGKLAKVALVTISLWFMAWTPYLVIN
23==            --------------------SEDCDKS------AEGKLAKVALTTISLWFMAWTPYLVIC
24==            --------------------SEDCDKS------AENKLAKVALTTISLWFMAWTPYLIIC
25==            --------------------SENQNTS------AECKLAKVALMTISLWFMAWTPYLVIN
26==            -------------------NADQQKQS------AECRLAKVAMMTVGLWFMAWTPYLIIS
27==            --------------------KAQAGAS------AEMKLAKISMVIITQFMLSWSPYAIIA
28==            --------------------KAQAGAN------AEMRLAKISIVIVSQFLLSWSPYAVVA
29==            --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
30==            --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
31=p            --------------LLKHERKNISIFK------REQKAATTLGIIVGAFTVCWLPFFLLS
32==            PSEAG--PTPCAPASFERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA
33=p            PSESG--SNSYAPACLERKNERNAEAKRKMALARERKTVKTLGIIMGTFILCWLPFFIVA
34==            DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA
35=p            DTPYS-------------RTREKLELK------RERKAARTLAIITGAFLICWLPFFIIA
36==            TTGYGAVAAAYYPSLVRRKPKEAADSK------RERKAAKTLAIITGAFVACWLPFFVLA
                                                  * .           :           

1==             FYIFT-HQGS--DFGATFMTLPAFFAKSSALYNPVIYILMNKQFRNCMITTLCC------
2==             MYIFT-HQGS--NFGPIFMTLPAFFAKTASIYNPIIYIMMNKQFRNCMLTSLCC------
3==             FWIFT-NKGA--DFTATLMAVPAFFSKSSSLYNPIIYVLMNKQFRNCMITTICC------
4=p             AWIFF-NKGA--DFSAKFMAIPAFFSKSSALYNPVIYVLLNKQFRNCMLTTIFC------
5=p             AWIFF-NKGA--AFSAQFMAIPAFFSKTSALYNPVIYVLLNKQFRSCMLTTLFC------
6==             LWIVS-HRGE--EFDLRMATIPSCLSKASTVYNPVIYVLMNKQFRSCMM-KMVC------
7==             MYMVN-NRNH--GLDLRLVTIPSFFSKSACIYNPIIYCFMNKQFQACIM-KMVC------
8=opsin,        ------------------------------------------------------------
9==             CFAAA-NPGY--PFHPLMAALPAFFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------
10==            CFAAA-NPGY--AFHPLMAALPAYFAKSATIYNPVIYVFMNRQFRNCIL-QLF-------
11==            SFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPVIYVFMNRQFRNCIM-QLF-------
12==            CFAAA-NPGY--AFHPLAAALPAYFAKSATIYNPIIYVFMNRQFRNCIL-QLF-------
13==            LVVAT-HKGI--IIQPVLASLPSYFSKTATVYNPIIYVFMNKQFQSCLL-EMLCCGY---
14==            LIGAF-GDKT--LLTPGATMIPACACKMVACIDPFVYAISHPRYRMELQKRCPWLAL---
15==            LIGAF-GDKT--LLTPGATMIPACTCKMVACIDPFVYAISHPRYRMELQKRCPWLAI---
16==            LIGAF-GDKS--LLTQGATMIPACTCKLVACIDPFVYAISHPRYRLELQKRCPWLGV---
17==            LIGAF-GDKS--LLTPGATMIPACTCKLVACIEPFVYAISHPRYRMELQKRCPWLGV---
18==            LKGVM-GDTS--GITPLVSTLPALLAKSCSCYNPFVYAISHPKYRLAITQHLPWFCV---
19==            IQGLL-GNAE--GITPLLTTLPALLAKSCSCYNPFVYAISHPKFRLAITQHLPWFCV---
20==            CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
21==            CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
22==            CMGLF-KF-E--GLTPLNTIWGACFAKSAACYNPIVYGISHPKYRLALKEKCPCCVF---
23==            YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPKYRIVLKEKCPMCVF---
24==            YFGLF-KI-D--GLTPLTTIWGATFAKTSAVYNPIVYGISHPNDRLVLKEKCPMCVC---
25==            FSGIF-NL-V--KISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAALFAKFPSLAC---
26==            WAGVF-SSGT--RLTPLATIWGSVFAKANSCYNPIVYGISHPRYKAALYQRFPSLAC---
27==            LLAQF-GPAE--WVTPYAAELPVLFAKASAIHNPIVYSVSHPKFREAIQTTFPWLLTCCQ
28==            LLAQF-GPLE--WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQ
29==            TARPFICGTSCSCIPLWVERTFLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------
30==            TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRPTSRSLLQC------
31=p            TARPFICGTSCSCIPLWVERTCLWLGYANSLINPFIYAFFNRDLRTTYRSLLQC------
32==            LVLPF-CESSC-HMPTLLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------
33=p            LVLPF-CESSC-HMPALLGAIINWLGYSNSLLNPVIYAYFNKDFQNAFKKIIKC------
34==            LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------
35=p            LIGPF-VDPE--GIPPFARSFVLWLGYFNSLLNPIIYTIFSPEFRSAFQKILFG------
36==            ILVPT-CDCE---VSPVLTSLSLWLGYFNSTLNPVIYTVFSPEFRHAFQRLLCG------
                                                                            

1==             --GKNPLGDDE--SGASTSKTEVSSVS-TSPVS---------------------------
2==             --GKNPLGDDE--ASATASKTE------TSQVA---------------------------
3==             --GKNPFGDEDVSSTVSQSKTEVSSVS-SSQVS---------------------------
4=p             --GKNPLGDDE-SSTVSTSKTEVSS------VS---------------------------
5=p             --GKNPLGDEE-SSTVSTSKTEVSS------VS---------------------------
6==             --GKN-IEEDE--ASTSSQVTQVSS------VA---------------------------
7==             --GKA-MTDES--DTCSSQKTEVSTVS-STQVG---------------------------
8=opsin,        ------------------------------------------------------------
9==             --GKK-VDDGS--ELSSASKTEVSSV---SSVS---------------------------
10==            --GKK-VDDGS--ELSSASKTEVSSV---SSVS---------------------------
11==            --GKK-VDDGS--EASTTSRTEVSSVS-NSSVA---------------------------
12==            --GKK-VDDGS--EVST-SRTEVSSVS-NSSVS---------------------------
13==            -QPQR-TGKAS--PGTPGPHADVTAAGLRNKVM---------------------------
14==            ---NE-KAPES----SAVASTSTTQEPQQTTAA---------------------------
15==            ---SE-KAPES----RAAISTSTTQEQQQTTAA---------------------------
16==            ---NE-KSGEI----SSAQSTTTQEQ-QQTTAA---------------------------
17==            ---NE-KSGEA----SSAQSTTTQEQTQQTSAA---------------------------
18==            ---HE-TETKS-NDDSQSNSTVAQDKA---------------------------------
19==            ---HE-KDPND-VEENQSSNTQTQEKS---------------------------------
20==            ---GK-VDDGK-SSDAQSQATASEAESKA-------------------------------
21==            ---GK-VDDGK-SSDAQSQATASEAESKA-------------------------------
22==            ---GK-VDDGK-SSEAQSQATTSEAESKA-------------------------------
23==            ---GN-TDEPKPDAPASDTETTSEADSKA-------------------------------
24==            ---GT-TDEPKPDAPPSDTETTSEAESKD-------------------------------
25==            ----A-AEPSS-DAVSTTSGTTTVTDNEKSNA----------------------------
26==            ---GS-GESGS-DVKSEASATTTMEEKPKIPEA---------------------------
27==            FDEKE-CEDAN-DAEEEVVASER--GGESRDAAQMKEMMAMMQKMQAQQAAYQPPPPPQG
28==            FDDKE-TEDDK-DAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY----PPQG
29==            ---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
30==            ---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
31=p            ---QY-RNINR--KLSAAGMHEALKLAER-------------------------------
32==            ---KF-CRQ---------------------------------------------------
33=p            ---KF-CRR---------------------------------------------------
34==            ---KY-RRGHR-------------------------------------------------
35=p            ---KY-RRGHR-------------------------------------------------
36==            ---RR-VRRRR--A----------------------------------------------
                                                                            

1==             -----------------------------------PA-----------------------
2==             -----------------------------------PA-----------------------
3==             -----------------------------------PA-----------------------
4=p             -----------------------------------PA-----------------------
5=p             -----------------------------------PA-----------------------
6==             -----------------------------------PEK----------------------
7==             -----------------------------------PN-----------------------
8=opsin,        ------------------------------------------------------------
9==             -----------------------------------PA-----------------------
10==            -----------------------------------PA-----------------------
11==            -----------------------------------PA-----------------------
12==            -----------------------------------PA-----------------------
13==            -----------------------------------PAHPV--------------------
14==            ------------------------------------------------------------
15==            ------------------------------------------------------------
16==            ------------------------------------------------------------
17==            ------------------------------------------------------------
18==            ------------------------------------------------------------
19==            ------------------------------------------------------------
20==            ------------------------------------------------------------
21==            ------------------------------------------------------------
22==            ------------------------------------------------------------
23==            ------------------------------------------------------------
24==            ------------------------------------------------------------
25==            ------------------------------------------------------------
26==            ------------------------------------------------------------
27==            Y--PPQGYPPQGAYPPPQGYPPQGYPPQGYPPQGYPPQGAPPQVEAPQGAPPQGVDNQAY
28==            YAPPPQGYPPQGY--PPQGYPPQGYPPQGYPP---PPQGAPPQ-GAPPAAPPQGVDNQAY
29==            -----------------------------------PERPEFVL-QNADYCRKKGHDS---
30==            -----------------------------------PERSEFVL-QNSDHCGKKGHDT---
31=p            -----------------------------------PERSEFVL-QNSDHCGKKGHDT---
32==            ------------------------------------------------------------
33=p            ------------------------------------------------------------
34==            ------------------------------------------------------------
35=p            ------------------------------------------------------------
36==            -----------------------------------PQ-----------------------
                                                                            

1==             --
2==             --
3==             --
4=p             --
5=p             --
6==             --
7==             --
8=opsin,        --
9==             --
10==            --
11==            --
12==            --
13==            --
14==            --
15==            --
16==            --
17==            --
18==            --
19==            --
20==            --
21==            --
22==            --
23==            --
24==            --
25==            --
26==            --
27==            QA
28==            QA
29==            --
30==            --
31=p            --
32==            --
33=p            --
34==            --
35=p            --
36==            --