Mercurial > repos > rnateam > mirdeep2
diff test-data/output.mrd @ 0:eaac585f172a draft
Imported from capsule None
| author | rnateam |
|---|---|
| date | Tue, 27 Jan 2015 09:06:24 -0500 |
| parents | |
| children | 6a17e1229b9f |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/output.mrd Tue Jan 27 09:06:24 2015 -0500 @@ -0,0 +1,2108 @@ +>chrII:11534525-11540624_7 +score total 102170.8 +score for star read(s) 3.9 +score for read counts 102159.9 +score for mfe 2.4 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 200394 +mature read count 200381 +loop read count 0 +star read count 13 +exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq caacuauuauucucggaucagaucgagccauugcugguuucuuccacagugguacuuuccauuagaacuaucaccggguggaaacuagcaguggcucgaucuuuuccacu +pri_struct ..............(((..(((((((((((((((((((((((.((.(.((((((.(((......))).)))))).))).)))))))))))))))))))))))..)))... #MM +seq_377956_x1 ...............................ugcugguuucuuccacagugg.......................................................... 0 +seq_377882_x1 ...............................ugAugguuucuuccacaguggu......................................................... 1 +seq_375231_x11 ...............................ugcugguuucuuccacaguggua........................................................ 0 +seq_377915_x1 ................................................................gaacuaucaccggguggaaacuagcag................... 0 +seq_378313_x1 ....................................................................Aaucaccggguggaaacuag...................... 1 +seq_378070_x1 ....................................................................Aaucaccggguggaaacuagc..................... 1 +seq_374207_x17 ....................................................................Aaucaccggguggaaacuagcag................... 1 +seq_365952_x99 ....................................................................Aaucaccggguggaaacuagcagu.................. 1 +seq_377777_x1 ....................................................................uCucaccggguggaaacuagcagu.................. 1 +seq_377818_x1 .....................................................................Cucaccggguggaaacuagca.................... 1 +seq_378115_x1 .....................................................................aucaccggguggaaacuagca.................... 0 +seq_377479_x2 .....................................................................aucaccggguggaaacuagcag................... 0 +seq_377175_x3 .....................................................................Cucaccggguggaaacuagcag................... 1 +seq_377327_x2 .....................................................................Uucaccggguggaaacuagcag................... 1 +seq_369310_x61 .....................................................................Cucaccggguggaaacuagcagu.................. 1 +seq_377793_x1 .....................................................................aucaccgggGggaaacuagcagu.................. 1 +seq_377962_x1 .....................................................................aucaAcggguggaaacuagcagu.................. 1 +seq_378051_x1 .....................................................................aucaccggguggaaaAuagcagu.................. 1 +seq_378323_x1 .....................................................................aucaccggguggaaacuagAagu.................. 1 +seq_371516_x35 .....................................................................aucaccggguggaaacuagcagu.................. 0 +seq_377055_x3 .....................................................................aucaccggguggaaacuagcagC.................. 1 +seq_377970_x1 .....................................................................aucaccggguggaaacuagcagG.................. 1 +seq_377511_x2 .....................................................................Uucaccggguggaaacuagcagu.................. 1 +seq_378079_x1 .....................................................................aucaccggguggaaacuagcaguA................. 1 +seq_377431_x2 .....................................................................aucaccggguggaaacuagcaguU................. 1 +seq_377752_x1 ......................................................................ucaccggguggaaaAuag...................... 1 +seq_377443_x2 ......................................................................ucaccgggCggaaacuag...................... 1 +seq_378226_x1 ......................................................................ucaccCgguggaaacuag...................... 1 +seq_377974_x1 ......................................................................ucaccgggGggaaacuag...................... 1 +seq_378168_x1 ......................................................................ucaUcggguggaaacuag...................... 1 +seq_377959_x1 ......................................................................ucaAcggguggaaacuag...................... 1 +seq_377875_x1 ......................................................................ucaccggguggaaaUuag...................... 1 +seq_377878_x1 ......................................................................ucaccggguCgaaacuag...................... 1 +seq_378112_x1 ......................................................................ucaccggguggaNacuag...................... 1 +seq_378013_x1 ......................................................................ucaccggguggaaacuaC...................... 1 +seq_366886_x88 ......................................................................ucaccggguggaaacuag...................... 0 +seq_377813_x1 ......................................................................ucaccgggCggaaacuagc..................... 1 +seq_377341_x2 ......................................................................ucaccggguggaaacuaCc..................... 1 +seq_378124_x1 ......................................................................Ccaccggguggaaacuagc..................... 1 +seq_378326_x1 ......................................................................ucaccgggugAaaacuagc..................... 1 +seq_377088_x3 ......................................................................ucaccgggGggaaacuagc..................... 1 +seq_378155_x1 ......................................................................ucaccgggugCaaacuagc..................... 1 +seq_377717_x2 ......................................................................ucaccggguggaaacuCgc..................... 1 +seq_377885_x1 ......................................................................ucaccggguggaCacuagc..................... 1 +seq_377957_x1 ......................................................................ucaccggguggGaacuagc..................... 1 +seq_376727_x4 ......................................................................ucaccggguggaNacuagc..................... 1 +seq_363229_x131 ......................................................................ucaccggguggaaacuagc..................... 0 +seq_377513_x2 ......................................................................ucacAggguggaaacuagc..................... 1 +seq_378006_x1 ......................................................................ucaAcggguggaaacuagc..................... 1 +seq_377383_x2 ......................................................................ucaccggguggaaaGuagc..................... 1 +seq_377539_x2 ......................................................................ucaccggguggaaacuagU..................... 1 +seq_377451_x2 ......................................................................ucaccggguggaaacuagA..................... 1 +seq_372840_x25 ......................................................................ucaccgggCggaaacuagca.................... 1 +seq_377947_x1 ......................................................................ucGccggguggaaacuagca.................... 1 +seq_376538_x5 ......................................................................uAaccggguggaaacuagca.................... 1 +seq_377946_x1 ......................................................................ucaccggguggaaacGagca.................... 1 +seq_375901_x9 ......................................................................ucaccggguggaaacuaUca.................... 1 +seq_377531_x2 ......................................................................ucaccgggugCaaacuagca.................... 1 +seq_378056_x1 ......................................................................ucaccggguggGaacuagca.................... 1 +seq_376791_x4 ......................................................................ucaccggguggaGacuagca.................... 1 +seq_373200_x23 ......................................................................ucaccggguggaNacuagca.................... 1 +seq_377848_x1 ......................................................................ucaccggguggaaacuNgca.................... 1 +seq_377417_x2 ......................................................................ucaccggguggaaCcuagca.................... 1 +seq_377003_x4 ......................................................................ucaccgAguggaaacuagca.................... 1 +seq_376401_x6 ......................................................................ucaccggCuggaaacuagca.................... 1 +seq_377127_x3 ......................................................................ucaccggAuggaaacuagca.................... 1 +seq_378107_x1 ......................................................................uUaccggguggaaacuagca.................... 1 +seq_376935_x4 ......................................................................Gcaccggguggaaacuagca.................... 1 +seq_375025_x13 ......................................................................ucaccggguggaaacuagcU.................... 1 +seq_377653_x2 ......................................................................ucaccggguggaaacCagca.................... 1 +seq_313497_x2021......................................................................ucaccggguggaaacuagca.................... 0 +seq_374657_x15 ......................................................................ucaccggguggaaaAuagca.................... 1 +seq_377613_x2 ......................................................................ucaccggguUgaaacuagca.................... 1 +seq_375675_x10 ......................................................................ucaccggguggaaacuagcG.................... 1 +seq_371371_x37 ......................................................................ucaccgggGggaaacuagca.................... 1 +seq_376763_x4 ......................................................................ucacUggguggaaacuagca.................... 1 +seq_375934_x8 ......................................................................ucaccggguggaaacuCgca.................... 1 +seq_377599_x2 ......................................................................ucaccggguggaaacuagUa.................... 1 +seq_377839_x1 ......................................................................Ncaccggguggaaacuagca.................... 1 +seq_378050_x1 ......................................................................uNaccggguggaaacuagca.................... 1 +seq_376799_x4 ......................................................................ucaccggguggaaacuaAca.................... 1 +seq_376638_x5 ......................................................................ucaccggguggaCacuagca.................... 1 +seq_373823_x19 ......................................................................ucaccgggAggaaacuagca.................... 1 +seq_376803_x4 ......................................................................ucaccggguggaaacuagcC.................... 1 +seq_377683_x2 ......................................................................ucaccggguggaaacuagAa.................... 1 +seq_377112_x3 ......................................................................ucaccggguggCaacuagca.................... 1 +seq_376658_x5 ......................................................................ucaccggguggaaaUuagca.................... 1 +seq_376485_x6 ......................................................................ucaccggguggUaacuagca.................... 1 +seq_376169_x7 ......................................................................ucaccggguggaaacuagNa.................... 1 +seq_370746_x41 ......................................................................ucacAggguggaaacuagca.................... 1 +seq_375910_x8 ......................................................................ucaAcggguggaaacuagca.................... 1 +seq_378190_x1 ......................................................................ucaccggguCgaaacuagca.................... 1 +seq_377193_x3 ......................................................................ucaccgggugUaaacuagca.................... 1 +seq_376407_x6 ......................................................................Acaccggguggaaacuagca.................... 1 +seq_377283_x3 ......................................................................ucaUcggguggaaacuagca.................... 1 +seq_377643_x2 ......................................................................uGaccggguggaaacuagca.................... 1 +seq_378128_x1 ......................................................................ucaccggguggaaUcuagca.................... 1 +seq_377561_x2 ......................................................................ucaccggguggaaacuaCca.................... 1 +seq_375405_x10 ......................................................................ucaccgCguggaaacuagca.................... 1 +seq_377419_x2 ......................................................................ucaccggguAgaaacuagca.................... 1 +seq_377377_x2 ......................................................................ucaccAgguggaaacuagca.................... 1 +seq_376497_x6 ......................................................................ucaccUgguggaaacuagca.................... 1 +seq_377292_x3 ......................................................................Ccaccggguggaaacuagca.................... 1 +seq_377034_x3 ......................................................................ucaccgggugAaaacuagca.................... 1 +seq_378087_x1 ......................................................................ucaccgggNggaaacuagca.................... 1 +seq_377235_x3 ......................................................................ucaccggguggaaacAagcag................... 1 +seq_373154_x23 ......................................................................ucaccUgguggaaacuagcag................... 1 +seq_361443_x144 ......................................................................ucaccgggGggaaacuagcag................... 1 +seq_375100_x12 ......................................................................uNaccggguggaaacuagcag................... 1 +seq_376046_x8 ......................................................................ucaccggguggaaacCagcag................... 1 +seq_373568_x20 ......................................................................ucaccggguggaaaUuagcag................... 1 +seq_375012_x13 ......................................................................ucaccggguUgaaacuagcag................... 1 +seq_377076_x3 ......................................................................ucaccggguggaaacuagcGg................... 1 +seq_374715_x14 ......................................................................ucaccggguggGaacuagcag................... 1 +seq_370705_x41 ......................................................................ucaccggguggaaacuaUcag................... 1 +seq_377563_x2 ......................................................................Acaccggguggaaacuagcag................... 1 +seq_362702_x132 ......................................................................ucaccggguggaaacuagcaU................... 1 +seq_373084_x24 ......................................................................ucaccggguggaaacuCgcag................... 1 +seq_277590_x9943......................................................................ucaccggguggaaacuagcag................... 0 +seq_371687_x34 ......................................................................ucaccggguggaaacuagcaA................... 1 +seq_376246_x7 ......................................................................ucaccggUuggaaacuagcag................... 1 +seq_373356_x22 ......................................................................ucaccgggugCaaacuagcag................... 1 +seq_374455_x16 ......................................................................ucaccggguggaaacuaCcag................... 1 +seq_377037_x3 ......................................................................ucUccggguggaaacuagcag................... 1 +seq_376413_x6 ......................................................................ucaccggguggaaUcuagcag................... 1 +seq_377325_x2 ......................................................................ucGccggguggaaacuagcag................... 1 +seq_376383_x6 ......................................................................ucCccggguggaaacuagcag................... 1 +seq_375242_x11 ......................................................................ucaccgUguggaaacuagcag................... 1 +seq_374471_x16 ......................................................................uGaccggguggaaacuagcag................... 1 +seq_374882_x13 ......................................................................ucaUcggguggaaacuagcag................... 1 +seq_378207_x1 ......................................................................ucaccggguggaaaNuagcag................... 1 +seq_373918_x19 ......................................................................ucaccggCuggaaacuagcag................... 1 +seq_373993_x18 ......................................................................ucaccggguggaaacuNgcag................... 1 +seq_373464_x21 ......................................................................ucaccggAuggaaacuagcag................... 1 +seq_376305_x6 ......................................................................ucaccgAguggaaacuagcag................... 1 +seq_375892_x9 ......................................................................ucaccggguggaaCcuagcag................... 1 +seq_374047_x18 ......................................................................ucaccggguggaaacuagAag................... 1 +seq_374813_x14 ......................................................................ucaccggguggaaacuagcaC................... 1 +seq_374986_x13 ......................................................................ucaccggguggaaaGuagcag................... 1 +seq_374827_x14 ......................................................................ucacUggguggaaacuagcag................... 1 +seq_374503_x16 ......................................................................uAaccggguggaaacuagcag................... 1 +seq_372763_x26 ......................................................................ucaccggguggaCacuagcag................... 1 +seq_375465_x10 ......................................................................ucaccggguggaaacuGgcag................... 1 +seq_375264_x11 ......................................................................ucaccgggugAaaacuagcag................... 1 +seq_375575_x10 ......................................................................ucaccggguggaaacuUgcag................... 1 +seq_378072_x1 ......................................................................ucaNcggguggaaacuagcag................... 1 +seq_375856_x9 ......................................................................Gcaccggguggaaacuagcag................... 1 +seq_364582_x111 ......................................................................ucaccgggCggaaacuagcag................... 1 +seq_372940_x24 ......................................................................ucaccggguggUaacuagcag................... 1 +seq_372523_x27 ......................................................................ucaccggguggaGacuagcag................... 1 +seq_375172_x12 ......................................................................ucaccggguggaaacuagcCg................... 1 +seq_375341_x11 ......................................................................ucaccggguAgaaacuagcag................... 1 +seq_378331_x1 ......................................................................Ncaccggguggaaacuagcag................... 1 +seq_375820_x9 ......................................................................ucaccgggugUaaacuagcag................... 1 +seq_377543_x2 ......................................................................ucaccggNuggaaacuagcag................... 1 +seq_375784_x9 ......................................................................ucaccggguggaUacuagcag................... 1 +seq_374275_x17 ......................................................................ucaGcggguggaaacuagcag................... 1 +seq_374582_x15 ......................................................................ucaccggguggaaacuagNag................... 1 +seq_377647_x2 ......................................................................ucaccggguCgaaacuagcag................... 1 +seq_371106_x39 ......................................................................ucaAcggguggaaacuagcag................... 1 +seq_357095_x189 ......................................................................ucacAggguggaaacuagcag................... 1 +seq_376225_x7 ......................................................................uUaccggguggaaacuagcag................... 1 +seq_374224_x17 ......................................................................ucaccggguggaaacuagcUg................... 1 +seq_377577_x2 ......................................................................ucaccggguggaaGcuagcag................... 1 +seq_364121_x117 ......................................................................ucaccgggAggaaacuagcag................... 1 +seq_374743_x14 ......................................................................ucaccggguggCaacuagcag................... 1 +seq_377298_x3 ......................................................................ucaccggguggaaacGagcag................... 1 +seq_370537_x43 ......................................................................ucaccgCguggaaacuagcag................... 1 +seq_376827_x4 ......................................................................ucacGggguggaaacuagcag................... 1 +seq_377575_x2 ......................................................................ucaccggguggaaacuagGag................... 1 +seq_366243_x94 ......................................................................ucaccggguggaaaAuagcag................... 1 +seq_376267_x7 ......................................................................ucaccCgguggaaacuagcag................... 1 +seq_374173_x17 ......................................................................ucaccggguggaaacuaAcag................... 1 +seq_376491_x6 ......................................................................ucaccAgguggaaacuagcag................... 1 +seq_366616_x91 ......................................................................ucaccggguggaNacuagcag................... 1 +seq_374921_x13 ......................................................................Ccaccggguggaaacuagcag................... 1 +seq_372294_x30 ......................................................................ucaccggguggaaacuagUag................... 1 +seq_353824_x217 ......................................................................ucaccggguggaaacuagcaUu.................. 1 +seq_350246_x264 ......................................................................ucaccggguggCaacuagcagu.................. 1 +seq_315518_x1866......................................................................ucaccgggCggaaacuagcagu.................. 1 +seq_359581_x164 ......................................................................ucaccggguggaaUcuagcagu.................. 1 +seq_362834_x132 ......................................................................ucaccggguggaaacuagcaAu.................. 1 +seq_343209_x360 ......................................................................ucaccgggugAaaacuagcagu.................. 1 +seq_370664_x41 ......................................................................ucaccggguggaaacAagcagu.................. 1 +seq_358905_x171 ......................................................................ucaccggguggaUacuagcagu.................. 1 +seq_365851_x101 ......................................................................ucaccggguAgaaacuagcagu.................. 1 +seq_337854_x604 ......................................................................ucaAcggguggaaacuagcagu.................. 1 +seq_356125_x198 ......................................................................ucaccggguggGaacuagcagu.................. 1 +seq_356519_x194 ......................................................................ucaccAgguggaaacuagcagu.................. 1 +seq_360382_x156 ......................................................................ucaccggguggaaacuaAcagu.................. 1 +seq_346877_x304 ......................................................................ucaccggguggaaacuagcUgu.................. 1 +seq_350773_x263 ......................................................................ucaccggguggaaacuagAagu.................. 1 +seq_334503_x690 ......................................................................ucaccggguggaaacuagcagC.................. 1 +seq_303609_x2808......................................................................ucaccgggGggaaacuagcagu.................. 1 +seq_338458_x598 ......................................................................ucaccggguggaaacuaUcagu.................. 1 +seq_378211_x1 ......................................................................ucaccggguggNaacuagcagu.................. 1 +seq_364693_x111 ......................................................................ucaccggguggaaacGagcagu.................. 1 +seq_371067_x39 ......................................................................ucaccggNuggaaacuagcagu.................. 1 +seq_358554_x177 ......................................................................ucaccgAguggaaacuagcagu.................. 1 +seq_324605_x1295......................................................................ucaccggguggaNacuagcagu.................. 1 +seq_363360_x131 ......................................................................ucaccggguggaaaGuagcagu.................. 1 +seq_350510_x263 ......................................................................ucaccggguggaaacuaCcagu.................. 1 +seq_353161_x223 ......................................................................ucaccggguggaaacuNgcagu.................. 1 +seq_369000_x64 ......................................................................ucaccggguggaaacuagcGgu.................. 1 +seq_376811_x4 ......................................................................ucaccNgguggaaacuagcagu.................. 1 +seq_354681_x211 ......................................................................ucaGcggguggaaacuagcagu.................. 1 +seq_345626_x322 ......................................................................ucaccggguggaaaUuagcagu.................. 1 +seq_371184_x38 ......................................................................ucacGggguggaaacuagcagu.................. 1 +seq_348338_x283 ......................................................................ucaccggguggaaacuagUagu.................. 1 +seq_346264_x309 ......................................................................ucaccggguggaaacuagcCgu.................. 1 +seq_343924_x352 ......................................................................ucaccgggugCaaacuagcagu.................. 1 +seq_306417_x2793......................................................................ucacAggguggaaacuagcagu.................. 1 +seq_346573_x304 ......................................................................ucaccggguggUaacuagcagu.................. 1 +seq_339056_x557 ......................................................................ucaccggguggaaacuagcagG.................. 1 +seq_374612_x15 ......................................................................ucaccgggNggaaacuagcagu.................. 1 +seq_367235_x86 ......................................................................ucaccCgguggaaacuagcagu.................. 1 +seq_333000_x757 ......................................................................ucaccgCguggaaacuagcagu.................. 1 +seq_377559_x2 ......................................................................ucNccggguggaaacuagcagu.................. 1 +seq_340662_x508 ......................................................................ucaccggguggaCacuagcagu.................. 1 +seq_317384_x1629......................................................................ucaccgggAggaaacuagcagu.................. 1 +seq_370493_x44 ......................................................................ucGccggguggaaacuagcagu.................. 1 +seq_357654_x183 ......................................................................uGaccggguggaaacuagcagu.................. 1 +seq_336553_x669 ......................................................................ucaccggguggaaacuagcagA.................. 1 +seq_362966_x132 ......................................................................ucaccgggugUaaacuagcagu.................. 1 +seq_0_x149538 ......................................................................ucaccggguggaaacuagcagu.................. 0 +seq_355722_x204 ......................................................................uUaccggguggaaacuagcagu.................. 1 +seq_374567_x15 ......................................................................ucaNcggguggaaacuagcagu.................. 1 +seq_367321_x85 ......................................................................ucaccggguggaaCcuagcagu.................. 1 +seq_359246_x169 ......................................................................ucacUggguggaaacuagcagu.................. 1 +seq_321959_x1326......................................................................ucaccggguggaaaAuagcagu.................. 1 +seq_373688_x20 ......................................................................Ncaccggguggaaacuagcagu.................. 1 +seq_352016_x236 ......................................................................ucaccggguggaaacuagNagu.................. 1 +seq_349981_x265 ......................................................................ucaccggguUgaaacuagcagu.................. 1 +seq_377079_x3 ......................................................................ucaccggguggaaaNuagcagu.................. 1 +seq_355102_x209 ......................................................................ucaccggCuggaaacuagcagu.................. 1 +seq_363620_x129 ......................................................................ucaccgUguggaaacuagcagu.................. 1 +seq_348621_x282 ......................................................................ucaccggguggaaacuCgcagu.................. 1 +seq_364914_x108 ......................................................................ucaccggUuggaaacuagcagu.................. 1 +seq_356713_x192 ......................................................................Gcaccggguggaaacuagcagu.................. 1 +seq_362015_x141 ......................................................................uNaccggguggaaacuagcagu.................. 1 +seq_377049_x3 ......................................................................ucaccggguggaaacuagcagN.................. 1 +seq_370988_x40 ......................................................................ucaccggguggaaacuagGagu.................. 1 +seq_365750_x101 ......................................................................Acaccggguggaaacuagcagu.................. 1 +seq_360538_x155 ......................................................................ucaccggguCgaaacuagcagu.................. 1 +seq_358198_x178 ......................................................................ucaccggguggaaacuagcaCu.................. 1 +seq_347766_x287 ......................................................................uAaccggguggaaacuagcagu.................. 1 +seq_367734_x78 ......................................................................ucCccggguggaaacuagcagu.................. 1 +seq_359907_x159 ......................................................................ucaccggguggaaacuGgcagu.................. 1 +seq_349444_x269 ......................................................................ucaccUgguggaaacuagcagu.................. 1 +seq_361151_x146 ......................................................................Ccaccggguggaaacuagcagu.................. 1 +seq_344276_x345 ......................................................................ucaccggguggaGacuagcagu.................. 1 +seq_376183_x7 ......................................................................ucaccggguggaaacuaNcagu.................. 1 +seq_353605_x219 ......................................................................ucaccggAuggaaacuagcagu.................. 1 +seq_359415_x166 ......................................................................ucaccggguggaaacCagcagu.................. 1 +seq_371755_x33 ......................................................................ucUccggguggaaacuagcagu.................. 1 +seq_355518_x204 ......................................................................ucaUcggguggaaacuagcagu.................. 1 +seq_375811_x9 ......................................................................ucacNggguggaaacuagcagu.................. 1 +seq_342436_x389 ......................................................................ucaccggguggaaacuUgcagu.................. 1 +seq_370948_x40 ......................................................................ucaccggguggaaGcuagcagu.................. 1 +seq_369608_x57 ......................................................................ucaccggguggaaacuagcagug................. 0 +seq_309210_x2159......................................................................ucaccggguggaaacuagcaguA................. 1 +seq_378140_x1 ......................................................................ucaccggguCgaaacuagcagug................. 1 +seq_378025_x1 ......................................................................ucaccggguUgaaacuagcagug................. 1 +seq_287533_x5429......................................................................ucaccggguggaaacuagcaguU................. 1 +seq_377923_x1 ......................................................................ucaccggguggaaaAuagcagug................. 1 +seq_377507_x2 ......................................................................ucaccggguggaUacuagcagug................. 1 +seq_369929_x51 ......................................................................ucaccggguggaaacuagcaguC................. 1 +seq_377181_x3 ......................................................................ucaccgggGggaaacuagcagug................. 1 +seq_378212_x1 ......................................................................ucaccggguggaaacuagcaAug................. 1 +seq_378218_x1 ......................................................................ucaccggguggaaacuagcagCg................. 1 +seq_378222_x1 ......................................................................ucaccgggCggaaacuagcagug................. 1 +seq_377304_x3 ......................................................................ucacAggguggaaacuagcagug................. 1 +seq_378319_x1 ......................................................................ucaccggguggaaacuagNagug................. 1 +seq_378109_x1 ......................................................................Gcaccggguggaaacuagcagug................. 1 +seq_377806_x1 ......................................................................ucaccggguggaCacuagcagug................. 1 +seq_378252_x1 ......................................................................ucaccgggugCaaacuagcagug................. 1 +seq_378135_x1 ......................................................................ucaccggguggaaacuagcagAgg................ 1 +seq_377427_x2 ......................................................................ucaccggguggaaacuagcagugU................ 1 +seq_376723_x4 ......................................................................ucaccggguggaaacuagcaguAg................ 1 +seq_378093_x1 ......................................................................ucaccggguggaaacuagcagugg................ 0 +seq_378199_x1 ......................................................................Ccaccggguggaaacuagcagugg................ 1 +seq_377019_x3 ......................................................................ucaccggguggaaacuagcaguUg................ 1 +seq_376939_x4 ......................................................................ucaccggguggaaacuagcagugC................ 1 +seq_377675_x2 ......................................................................ucaccggguggaaacuagcagugCc............... 1 +seq_378133_x1 ......................................................................ucaccggguggaaacuagcaguCgc............... 1 +seq_377421_x2 ......................................................................ucaccggguggaaacuagcagugAc............... 1 +seq_377913_x1 ......................................................................ucaccggguggaaacuagcaguggA............... 1 +seq_378078_x1 ......................................................................ucaccggguggaaacuagcaguggU............... 1 +seq_377619_x2 ......................................................................ucaccggguggaaacuagcaguAgc............... 1 +seq_377807_x1 ......................................................................ucaccggguggaaacuagcagAggc............... 1 +seq_377898_x1 ......................................................................ucaccggguggaaacuagcagugAcu.............. 1 +seq_378113_x1 ......................................................................ucaccggguggaaacuagcaguggAu.............. 1 +seq_377401_x2 ......................................................................ucaccggguggaaacuagcaguggcG.............. 1 +seq_378194_x1 ......................................................................ucaccggguggaaacuagcaguggcu.............. 0 +seq_378167_x1 ......................................................................ucaccggguggaaacuagcaguCgcuc............. 1 +seq_378175_x1 ......................................................................ucaccggguggaaacuagcaguggUuc............. 1 +seq_377994_x1 .......................................................................caccggguggaaacuagca.................... 0 +seq_378189_x1 .......................................................................caccggguggGaacuagcag................... 1 +seq_374960_x13 .......................................................................caccggguggaaacuagcag................... 0 +seq_377130_x3 .......................................................................caccgggAggaaacuagcagu.................. 1 +seq_377925_x1 .......................................................................caccggguggaaacuagAagu.................. 1 +seq_378300_x1 .......................................................................cCccggguggaaacuagcagu.................. 1 +seq_377505_x2 .......................................................................Uaccggguggaaacuagcagu.................. 1 +seq_365546_x102 .......................................................................caccggguggaaacuagcagu.................. 0 +seq_377187_x3 .......................................................................caccggguggaaaAuagcagu.................. 1 +seq_374407_x16 .......................................................................caccgggGggaaacuagcagu.................. 1 +seq_377475_x2 .......................................................................caAcggguggaaacuagcagu.................. 1 +seq_377908_x1 .......................................................................caccggguggaaacuagcaUu.................. 1 +seq_378180_x1 .......................................................................caccggguggaaacuagcGgu.................. 1 +seq_377250_x3 .......................................................................caccgggCggaaacuagcagu.................. 1 +seq_375435_x10 .......................................................................caccggguggaaacuagcaguA................. 1 +seq_371551_x34 .......................................................................caccggguggaaacuagcaguU................. 1 +seq_378114_x1 ........................................................................accggguggaaGcuagca.................... 1 +seq_377537_x2 ........................................................................accCgguggaaacuagca.................... 1 +seq_375253_x11 ........................................................................accggguggaaacuagca.................... 0 +seq_378294_x1 ........................................................................accggguggGaacuagca.................... 1 +seq_377758_x1 ........................................................................accggguggaaacuagcCg................... 1 +seq_377711_x2 ........................................................................accgggAggaaacuagcag................... 1 +seq_368606_x67 ........................................................................accggguggaaacuagcag................... 0 +seq_377491_x2 ........................................................................accgggCggaaacuagcag................... 1 +seq_378325_x1 ........................................................................accggguggGaacuagcag................... 1 +seq_377944_x1 ........................................................................aAcggguggaaacuagcag................... 1 +seq_378146_x1 ........................................................................accggguggaGacuagcag................... 1 +seq_378272_x1 ........................................................................accgAguggaaacuagcag................... 1 +seq_378213_x1 ........................................................................accggguggaaacuaAcag................... 1 +seq_376449_x6 ........................................................................accgggGggaaacuagcag................... 1 +seq_377814_x1 ........................................................................accggguggaaacuaUcag................... 1 +seq_377816_x1 ........................................................................accggguggaaacuagcaC................... 1 +seq_377487_x2 ........................................................................accggguggaCacuagcagu.................. 1 +seq_377976_x1 ........................................................................accgggugCaaacuagcagu.................. 1 +seq_376895_x4 ........................................................................accggguggCaacuagcagu.................. 1 +seq_376608_x5 ........................................................................accggguggaaacuagAagu.................. 1 +seq_377589_x2 ........................................................................accggguggaaacCagcagu.................. 1 +seq_378160_x1 ........................................................................accggguggaaacuGgcagu.................. 1 +seq_376197_x7 ........................................................................accggguggaaaUuagcagu.................. 1 +seq_377007_x3 ........................................................................accgAguggaaacuagcagu.................. 1 +seq_378247_x1 ........................................................................accggguggaaacuagcaAu.................. 1 +seq_377343_x2 ........................................................................accggguAgaaacuagcagu.................. 1 +seq_369980_x50 ........................................................................accCgguggaaacuagcagu.................. 1 +seq_377859_x1 ........................................................................accAgguggaaacuagcagu.................. 1 +seq_377999_x1 ........................................................................accggguggaaGcuagcagu.................. 1 +seq_377373_x2 ........................................................................accgggugAaaacuagcagu.................. 1 +seq_377142_x3 ........................................................................acUggguggaaacuagcagu.................. 1 +seq_377064_x3 ........................................................................accggguggaaacuagNagu.................. 1 +seq_368470_x69 ........................................................................accgggGggaaacuagcagu.................. 1 +seq_378073_x1 ........................................................................accggguggaaacuUgcagu.................. 1 +seq_376623_x5 ........................................................................accggguggaaaNuagcagu.................. 1 +seq_374672_x15 ........................................................................accgggAggaaacuagcagu.................. 1 +seq_377457_x2 ........................................................................accgggugUaaacuagcagu.................. 1 +seq_378191_x1 ........................................................................aGcggguggaaacuagcagu.................. 1 +seq_329405_x990 ........................................................................accggguggaaacuagcagu.................. 0 +seq_375926_x8 ........................................................................accggguggGaacuagcagu.................. 1 +seq_374908_x13 ........................................................................accggguggaaacuagcagC.................. 1 +seq_377307_x3 ........................................................................accggguggaaaGuagcagu.................. 1 +seq_376987_x4 ........................................................................acAggguggaaacuagcagu.................. 1 +seq_377767_x1 ........................................................................accggguggaUacuagcagu.................. 1 +seq_378314_x1 ........................................................................accggguggaaacAagcagu.................. 1 +seq_377983_x1 ........................................................................accggNuggaaacuagcagu.................. 1 +seq_376871_x4 ........................................................................accggguggaaacuagcUgu.................. 1 +seq_377583_x2 ........................................................................aUcggguggaaacuagcagu.................. 1 +seq_376867_x4 ........................................................................accggguCgaaacuagcagu.................. 1 +seq_376479_x6 ........................................................................aAcggguggaaacuagcagu.................. 1 +seq_378163_x1 ........................................................................accUgguggaaacuagcagu.................. 1 +seq_377010_x3 ........................................................................accggguggaaacuaCcagu.................. 1 +seq_377268_x3 ........................................................................accgCguggaaacuagcagu.................. 1 +seq_375730_x9 ........................................................................accggguggaaacuagcagA.................. 1 +seq_375802_x9 ........................................................................accggguggaaacuaAcagu.................. 1 +seq_377988_x1 ........................................................................accggguggaaacuagcaNu.................. 1 +seq_376787_x4 ........................................................................accggguggUaacuagcagu.................. 1 +seq_377415_x2 ........................................................................accggguggaaacuCgcagu.................. 1 +seq_370268_x46 ........................................................................accgggCggaaacuagcagu.................. 1 +seq_377889_x1 ........................................................................acGggguggaaacuagcagu.................. 1 +seq_374934_x13 ........................................................................accggguggaaaAuagcagu.................. 1 +seq_377519_x2 ........................................................................aNcggguggaaacuagcagu.................. 1 +seq_377881_x1 ........................................................................accggguggaaacGagcagu.................. 1 +seq_377381_x2 ........................................................................accggguggaaacuagcaUu.................. 1 +seq_377097_x3 ........................................................................Uccggguggaaacuagcagu.................. 1 +seq_377797_x1 ........................................................................accggguggaaacuagGagu.................. 1 +seq_376887_x4 ........................................................................accggUuggaaacuagcagu.................. 1 +seq_378150_x1 ........................................................................accggguggaaCcuagcagu.................. 1 +seq_378251_x1 ........................................................................accggguggaaacuagUagu.................. 1 +seq_376708_x5 ........................................................................accggguggaaacuagcaCu.................. 1 +seq_377811_x1 ........................................................................Cccggguggaaacuagcagu.................. 1 +seq_376731_x4 ........................................................................accggguggaaacuaUcagu.................. 1 +seq_375829_x9 ........................................................................accggguggaaacuagcagG.................. 1 +seq_374535_x16 ........................................................................accggguggaaacuagcCgu.................. 1 +seq_377685_x2 ........................................................................accggguggaGacuagcagu.................. 1 +seq_372017_x32 ........................................................................accggguggaaacuagcaguU................. 1 +seq_377768_x1 ........................................................................accggguggaaacuagcagug................. 0 +seq_373036_x24 ........................................................................accggguggaaacuagcaguA................. 1 +seq_376927_x4 .........................................................................Ucggguggaaacuagcagu.................. 1 +seq_376014_x8 .........................................................................ccggguggaaacuagcagu.................. 0 +seq_378116_x1 .........................................................................Acggguggaaacuagcagu.................. 1 +seq_378329_x1 .........................................................................ccggguggaaacuagcaguggcu.............. 0 +seq_376903_x4 ..........................................................................cggguggaaacuagcagu.................. 0 +seq_378178_x1 ..........................................................................cggguggaaacuagAagu.................. 1 +seq_377996_x1 ............................................................................................ggcuAgaucuuuuccacu 1 + + + +>chrII:11534525-11540624_12 +score total -0.2 +score for star read(s) -1.3 +score for read counts 0 +score for mfe 0.2 +score for randfold -2.2 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 119546 +mature read count 119545 +loop read count 1 +star read count 0 +exp ffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSSSSffffffffffff +pri_seq gcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaa +pri_struct ..................((((((((((.((((....((((.(..(((((..(.....)..))))...)..)))))....))))...)).))))))))............ #MM +seq_378182_x1 ................Gguaucaccgggugaacacuugcagu.................................................................... 1 +seq_378210_x1 ..................uaucaccgggugaacacuugca...................................................................... 0 +seq_377082_x3 ..................Aaucaccgggugaacacuugcag..................................................................... 1 +seq_376915_x4 ..................uaucaccgggugaacacuugcag..................................................................... 0 +seq_378060_x1 ..................uaucaccgggugaacacuugcagu.................................................................... 0 +seq_367062_x87 ..................Aaucaccgggugaacacuugcagu.................................................................... 1 +seq_377289_x3 ...................aucaccgggugaacacuugca...................................................................... 0 +seq_377605_x2 ...................Cucaccgggugaacacuugca...................................................................... 1 +seq_378046_x1 ...................aucaccgggugaacacGugca...................................................................... 1 +seq_378288_x1 ...................aucaccgggGgaacacuugcag..................................................................... 1 +seq_377997_x1 ...................aucaccgggugaaUacuugcag..................................................................... 1 +seq_373177_x23 ...................Uucaccgggugaacacuugcag..................................................................... 1 +seq_377844_x1 ...................aucaccgggugaacacuugcaU..................................................................... 1 +seq_373668_x20 ...................aucaccgggugaacacuugcag..................................................................... 0 +seq_377762_x1 ...................aucaAcgggugaacacuugcag..................................................................... 1 +seq_377747_x1 ...................aucaccgggugaacaAuugcag..................................................................... 1 +seq_376775_x4 ...................aucaccgggCgaacacuugcagu.................................................................... 1 +seq_377639_x2 ...................aucaccCggugaacacuugcagu.................................................................... 1 +seq_377521_x2 ...................aucaccgggugaacacuugAagu.................................................................... 1 +seq_377783_x1 ...................aucaccggCugaacacuugcagu.................................................................... 1 +seq_368805_x66 ...................Cucaccgggugaacacuugcagu.................................................................... 1 +seq_377353_x2 ...................aucaccgggugaacacuugcagC.................................................................... 1 +seq_378177_x1 ...................aucaccgggugaacacuGgcagu.................................................................... 1 +seq_378165_x1 ...................aucaccgggugaNcacuugcagu.................................................................... 1 +seq_377109_x3 ...................aucaccgggugaacacuugcaUu.................................................................... 1 +seq_377917_x1 ...................Uucaccgggugaacacuugcagu.................................................................... 1 +seq_376831_x4 ...................aucaccgggAgaacacuugcagu.................................................................... 1 +seq_377800_x1 ...................aucaccggUugaacacuugcagu.................................................................... 1 +seq_376839_x4 ...................aucaccgggGgaacacuugcagu.................................................................... 1 +seq_377963_x1 ...................auGaccgggugaacacuugcagu.................................................................... 1 +seq_378067_x1 ...................aucaccggAugaacacuugcagu.................................................................... 1 +seq_358376_x178 ...................aucaccgggugaacacuugcagu.................................................................... 0 +seq_377709_x2 ...................aucaccgggugaacacuugcCgu.................................................................... 1 +seq_377782_x1 ...................aucaccgggugaacacuugcUgu.................................................................... 1 +seq_377958_x1 ...................aucaccgCgugaacacuugcagu.................................................................... 1 +seq_378230_x1 ...................aucaccgggugaacacuugcGgu.................................................................... 1 +seq_377855_x1 ...................aucaccgggugaacacuugcagA.................................................................... 1 +seq_378037_x1 ...................aucaccgAgugaacacuugcagu.................................................................... 1 +seq_378265_x1 ...................aucaccgggugaacCcuugcagu.................................................................... 1 +seq_377954_x1 ...................aucaccgggugaacacuCgcagu.................................................................... 1 +seq_377772_x1 ...................aucaAcgggugaacacuugcagu.................................................................... 1 +seq_377527_x2 ...................aucaccgggugaacacuugcaguA................................................................... 1 +seq_377133_x3 ...................aucaccgggugaacacuugcaguU................................................................... 1 +seq_378317_x1 ....................uAaccgggugaacacuug........................................................................ 1 +seq_378095_x1 ....................Acaccgggugaacacuug........................................................................ 1 +seq_373608_x20 ....................ucaccgggugaacacuug........................................................................ 0 +seq_377971_x1 ....................ucaAcgggugaacacuug........................................................................ 1 +seq_378106_x1 ....................ucaccgggugaaAacuug........................................................................ 1 +seq_377951_x1 ....................ucaccgggGgaacacuug........................................................................ 1 +seq_378005_x1 ....................ucaccgggugaCcacuug........................................................................ 1 +seq_377918_x1 ....................ucaccgggugaacacuuU........................................................................ 1 +seq_378295_x1 ....................ucaccgUgugaacacuug........................................................................ 1 +seq_377445_x2 ....................ucaccgggugaaGacuug........................................................................ 1 +seq_377897_x1 ....................ucaccgggugaaGacuugc....................................................................... 1 +seq_378284_x1 ....................ucaccgggugaacaGuugc....................................................................... 1 +seq_373012_x24 ....................ucaccgggugaacacuugc....................................................................... 0 +seq_377615_x2 ....................uAaccgggugaacacuugca...................................................................... 1 +seq_377553_x2 ....................uUaccgggugaacacuugca...................................................................... 1 +seq_378074_x1 ....................ucaccgggugaaNacuugca...................................................................... 1 +seq_376735_x4 ....................ucaccgggugaacacuuUca...................................................................... 1 +seq_375220_x11 ....................ucaccgggCgaacacuugca...................................................................... 1 +seq_378034_x1 ....................ucaccgggugCacacuugca...................................................................... 1 +seq_376568_x5 ....................ucaccggCugaacacuugca...................................................................... 1 +seq_376461_x6 ....................ucaccgAgugaacacuugca...................................................................... 1 +seq_377473_x2 ....................ucaccgggugaacacGugca...................................................................... 1 +seq_377757_x1 ....................ucaccggguCaacacuugca...................................................................... 1 +seq_372988_x24 ....................ucacAgggugaacacuugca...................................................................... 1 +seq_378205_x1 ....................ucaccgggugaacacuugUa...................................................................... 1 +seq_376943_x4 ....................ucaccgggugaacaAuugca...................................................................... 1 +seq_377253_x3 ....................ucaccgggugaacUcuugca...................................................................... 1 +seq_377555_x2 ....................ucaUcgggugaacacuugca...................................................................... 1 +seq_377891_x1 ....................ucaccAggugaacacuugca...................................................................... 1 +seq_378327_x1 ....................ucaccgggugaacacuugAa...................................................................... 1 +seq_327151_x1237....................ucaccgggugaacacuugca...................................................................... 0 +seq_378238_x1 ....................ucaccgggugaacacuCgca...................................................................... 1 +seq_377912_x1 ....................uNaccgggugaacacuugca...................................................................... 1 +seq_376443_x6 ....................ucaccgggugaaUacuugca...................................................................... 1 +seq_375385_x10 ....................ucaccgggugaacacuGgca...................................................................... 1 +seq_377802_x1 ....................ucaccgggugaacacCugca...................................................................... 1 +seq_376663_x5 ....................ucaccgggugaacacuugcU...................................................................... 1 +seq_376783_x4 ....................ucaccgggugaacacuuAca...................................................................... 1 +seq_376795_x4 ....................ucGccgggugaacacuugca...................................................................... 1 +seq_377190_x3 ....................ucaccgggugaacacuAgca...................................................................... 1 +seq_377335_x2 ....................ucaAcgggugaacacuugca...................................................................... 1 +seq_377541_x2 ....................ucaccggAugaacacuugca...................................................................... 1 +seq_377154_x3 ....................ucaccggguUaacacuugca...................................................................... 1 +seq_378270_x1 ....................Acaccgggugaacacuugca...................................................................... 1 +seq_376653_x5 ....................ucaccUggugaacacuugca...................................................................... 1 +seq_376543_x5 ....................uGaccgggugaacacuugca...................................................................... 1 +seq_376751_x4 ....................ucaccggUugaacacuugca...................................................................... 1 +seq_378299_x1 ....................ucaccgggugaacGcuugca...................................................................... 1 +seq_376078_x8 ....................ucaccgggGgaacacuugca...................................................................... 1 +seq_377830_x1 ....................ucaccgggugaCcacuugca...................................................................... 1 +seq_377397_x2 ....................ucaccgUgugaacacuugca...................................................................... 1 +seq_377557_x2 ....................ucacUgggugaacacuugca...................................................................... 1 +seq_377850_x1 ....................ucaccggNugaacacuugca...................................................................... 1 +seq_377405_x2 ....................ucaccgggugaaGacuugca...................................................................... 1 +seq_378080_x1 ....................ucaccgggugGacacuugca...................................................................... 1 +seq_375883_x9 ....................ucaccgCgugaacacuugca...................................................................... 1 +seq_377821_x1 ....................ucaccgggugaacCcuugca...................................................................... 1 +seq_374729_x14 ....................ucaccgggugaaAacuugca...................................................................... 1 +seq_377667_x2 ....................ucaGcgggugaacacuugca...................................................................... 1 +seq_377565_x2 ....................ucaccgggugaacacuugcG...................................................................... 1 +seq_377829_x1 ....................ucaccgggugaUcacuugca...................................................................... 1 +seq_373975_x18 ....................ucaccgggAgaacacuugca...................................................................... 1 +seq_377148_x3 ....................ucaccgggugaacacuuCca...................................................................... 1 +seq_378321_x1 ....................ucaccCggugaacacuugca...................................................................... 1 +seq_377824_x1 ....................Gcaccgggugaacacuugca...................................................................... 1 +seq_377046_x3 ....................ucaccgggugaacaGuugca...................................................................... 1 +seq_377838_x1 ....................ucaccgggugaacacuuNca...................................................................... 1 +seq_377355_x2 ....................ucaccgggugaacacuugGag..................................................................... 1 +seq_376603_x5 ....................Acaccgggugaacacuugcag..................................................................... 1 +seq_375415_x10 ....................ucaccgggugaacacuugAag..................................................................... 1 +seq_376573_x5 ....................ucaccgggugaaGacuugcag..................................................................... 1 +seq_376425_x6 ....................ucaccgggugaacacuAgcag..................................................................... 1 +seq_376176_x7 ....................ucaccgggugaacacuugNag..................................................................... 1 +seq_378132_x1 ....................ucacGgggugaacacuugcag..................................................................... 1 +seq_376588_x5 ....................ucaUcgggugaacacuugcag..................................................................... 1 +seq_376274_x7 ....................ucaccggguAaacacuugcag..................................................................... 1 +seq_376070_x8 ....................ucaccgggugaacacuugcaC..................................................................... 1 +seq_375308_x11 ....................ucaccgggugaacacCugcag..................................................................... 1 +seq_376126_x8 ....................ucaccUggugaacacuugcag..................................................................... 1 +seq_378103_x1 ....................ucNccgggugaacacuugcag..................................................................... 1 +seq_376593_x5 ....................uGaccgggugaacacuugcag..................................................................... 1 +seq_373937_x19 ....................ucaccgggugaacacuuUcag..................................................................... 1 +seq_376204_x7 ....................ucaccgggugaacacuuCcag..................................................................... 1 +seq_377435_x2 ....................ucaccggguCaacacuugcag..................................................................... 1 +seq_377779_x1 ....................ucaccgggugaacaGuugcag..................................................................... 1 +seq_377788_x1 ....................ucaccgggugaacacuNgcag..................................................................... 1 +seq_377295_x3 ....................ucaccgggugaacacuCgcag..................................................................... 1 +seq_376521_x6 ....................uAaccgggugaacacuugcag..................................................................... 1 +seq_375766_x9 ....................ucaccgggugaaUacuugcag..................................................................... 1 +seq_377265_x3 ....................uUaccgggugaacacuugcag..................................................................... 1 +seq_376835_x4 ....................ucaccggAugaacacuugcag..................................................................... 1 +seq_377729_x2 ....................ucaccgggugaUcacuugcag..................................................................... 1 +seq_296962_x3796....................ucaccgggugaacacuugcag..................................................................... 0 +seq_369371_x60 ....................ucaccgggGgaacacuugcag..................................................................... 1 +seq_376643_x5 ....................ucaccgggugCacacuugcag..................................................................... 1 +seq_376563_x5 ....................ucaccgUgugaacacuugcag..................................................................... 1 +seq_377437_x2 ....................ucaGcgggugaacacuugcag..................................................................... 1 +seq_376253_x7 ....................ucaccggguUaacacuugcag..................................................................... 1 +seq_375793_x9 ....................ucaccgggugaacacuugcCg..................................................................... 1 +seq_367812_x78 ....................ucacAgggugaacacuugcag..................................................................... 1 +seq_376923_x4 ....................ucaccgggugaacacAugcag..................................................................... 1 +seq_376347_x6 ....................ucaccgAgugaacacuugcag..................................................................... 1 +seq_376190_x7 ....................ucacUgggugaacacuugcag..................................................................... 1 +seq_370787_x41 ....................ucaccgggCgaacacuugcag..................................................................... 1 +seq_377025_x3 ....................ucUccgggugaacacuugcag..................................................................... 1 +seq_376983_x4 ....................ucCccgggugaacacuugcag..................................................................... 1 +seq_378141_x1 ....................ucaccggNugaacacuugcag..................................................................... 1 +seq_377067_x3 ....................ucaccgggugaCcacuugcag..................................................................... 1 +seq_376155_x7 ....................Ccaccgggugaacacuugcag..................................................................... 1 +seq_374771_x14 ....................ucaccgggugaacacuGgcag..................................................................... 1 +seq_377786_x1 ....................ucaccgggugaacacuugcGg..................................................................... 1 +seq_377515_x2 ....................ucaccgggugaacCcuugcag..................................................................... 1 +seq_375184_x12 ....................ucaccgggugaacacuugcUg..................................................................... 1 +seq_375958_x8 ....................ucaccgggugaacacuugUag..................................................................... 1 +seq_372173_x31 ....................ucaccgggugaaNacuugcag..................................................................... 1 +seq_372890_x25 ....................ucaccgggugaacaAuugcag..................................................................... 1 +seq_372737_x26 ....................ucaccgCgugaacacuugcag..................................................................... 1 +seq_371788_x33 ....................ucaccgggAgaacacuugcag..................................................................... 1 +seq_376931_x4 ....................ucaccgggugGacacuugcag..................................................................... 1 +seq_376389_x6 ....................ucaccAggugaacacuugcag..................................................................... 1 +seq_374375_x16 ....................ucaccgggugaacacuugcaU..................................................................... 1 +seq_377333_x2 ....................uNaccgggugaacacuugcag..................................................................... 1 +seq_377723_x2 ....................ucGccgggugaacacuugcag..................................................................... 1 +seq_376807_x4 ....................ucaccgggugUacacuugcag..................................................................... 1 +seq_377547_x2 ....................ucaccgggugaacacuugcaA..................................................................... 1 +seq_375535_x10 ....................ucaccgggugaacUcuugcag..................................................................... 1 +seq_376911_x4 ....................ucaccggUugaacacuugcag..................................................................... 1 +seq_373246_x22 ....................ucaccgggugaaAacuugcag..................................................................... 1 +seq_376668_x5 ....................ucaccgggugaacaUuugcag..................................................................... 1 +seq_378036_x1 ....................ucaccCggugaacacuugcag..................................................................... 1 +seq_377651_x2 ....................ucaccgggugaGcacuugcag..................................................................... 1 +seq_378309_x1 ....................ucaccgggugaacacuuAcag..................................................................... 1 +seq_375990_x8 ....................ucaccggCugaacacuugcag..................................................................... 1 +seq_375625_x10 ....................ucaAcgggugaacacuugcag..................................................................... 1 +seq_376162_x7 ....................Gcaccgggugaacacuugcag..................................................................... 1 +seq_376583_x5 ....................ucaccgggugaacacGugcag..................................................................... 1 +seq_361001_x150 ....................ucaccgggugaacacuuCcagu.................................................................... 1 +seq_369064_x62 ....................ucaccgggugaacacuugcaAu.................................................................... 1 +seq_366051_x97 ....................ucaccgggugaacaUuugcagu.................................................................... 1 +seq_359745_x162 ....................ucaccgggugGacacuugcagu.................................................................... 1 +seq_335879_x674 ....................ucaccgCgugaacacuugcagu.................................................................... 1 +seq_352711_x226 ....................ucaccgggugaaGacuugcagu.................................................................... 1 +seq_344621_x340 ....................ucaAcgggugaacacuugcagu.................................................................... 1 +seq_332159_x841 ....................ucaccgggAgaacacuugcagu.................................................................... 1 +seq_351534_x242 ....................ucaccgggugaacacuugcagG.................................................................... 1 +seq_341618_x427 ....................ucaccgggugaacaAuugcagu.................................................................... 1 +seq_367149_x86 ....................ucaGcgggugaacacuugcagu.................................................................... 1 +seq_371222_x38 ....................ucaccggNugaacacuugcagu.................................................................... 1 +seq_335193_x686 ....................ucaccgggugaaAacuugcagu.................................................................... 1 +seq_363877_x122 ....................ucaccgggugaacacuNgcagu.................................................................... 1 +seq_149538_x90904....................ucaccgggugaacacuugcagu.................................................................... 0 +seq_360693_x155 ....................ucaccgggugaacacuugNagu.................................................................... 1 +seq_363491_x129 ....................ucaccgggugaacacuuAcagu.................................................................... 1 +seq_356323_x196 ....................ucaccgggugaaUacuugcagu.................................................................... 1 +seq_355311_x207 ....................ucaccggCugaacacuugcagu.................................................................... 1 +seq_365443_x103 ....................uGaccgggugaacacuugcagu.................................................................... 1 +seq_365022_x107 ....................uUaccgggugaacacuugcagu.................................................................... 1 +seq_375694_x9 ....................Ncaccgggugaacacuugcagu.................................................................... 1 +seq_356905_x190 ....................ucaccUggugaacacuugcagu.................................................................... 1 +seq_375974_x8 ....................ucUccgggugaacacuugcagu.................................................................... 1 +seq_363749_x128 ....................ucaUcgggugaacacuugcagu.................................................................... 1 +seq_371028_x39 ....................ucaccgggugaacaGuugcagu.................................................................... 1 +seq_375545_x10 ....................ucacNgggugaacacuugcagu.................................................................... 1 +seq_354892_x210 ....................ucaccgggugCacacuugcagu.................................................................... 1 +seq_362156_x140 ....................ucaccgggugaacacuugcaCu.................................................................... 1 +seq_364468_x114 ....................ucaccgUgugaacacuugcagu.................................................................... 1 +seq_366524_x92 ....................ucaccggguAaacacuugcagu.................................................................... 1 +seq_354469_x212 ....................ucaccggguUaacacuugcagu.................................................................... 1 +seq_331306_x853 ....................ucaccgggCgaacacuugcagu.................................................................... 1 +seq_359076_x170 ....................ucaccgggugaacacuCgcagu.................................................................... 1 +seq_365129_x106 ....................ucacUgggugaacacuugcagu.................................................................... 1 +seq_373223_x23 ....................ucacGgggugaacacuugcagu.................................................................... 1 +seq_371260_x37 ....................ucaccgggugaacacuugGagu.................................................................... 1 +seq_358731_x174 ....................ucaccgggugaacacuAgcagu.................................................................... 1 +seq_342045_x391 ....................ucaccgggugaacacuugcCgu.................................................................... 1 +seq_362296_x138 ....................ucaccgggugaacacuugcaUu.................................................................... 1 +seq_365339_x104 ....................ucaccgggugaacacuugAagu.................................................................... 1 +seq_372468_x28 ....................ucaccgggugaUcacuugcagu.................................................................... 1 +seq_372496_x27 ....................ucGccgggugaacacuugcagu.................................................................... 1 +seq_375565_x10 ....................ucaNcgggugaacacuugcagu.................................................................... 1 +seq_369188_x61 ....................ucaccgggugaCcacuugcagu.................................................................... 1 +seq_357284_x187 ....................ucaccgggugaacacuugcagA.................................................................... 1 +seq_367490_x83 ....................uNaccgggugaacacuugcagu.................................................................... 1 +seq_349174_x270 ....................ucaccgggugaacacuugcagC.................................................................... 1 +seq_368261_x70 ....................ucaccCggugaacacuugcagu.................................................................... 1 +seq_363098_x131 ....................ucaccgggugaacacGugcagu.................................................................... 1 +seq_377118_x3 ....................ucaccNggugaacacuugcagu.................................................................... 1 +seq_360848_x153 ....................ucaccgAgugaacacuugcagu.................................................................... 1 +seq_341170_x448 ....................ucaccgggugaacacuuUcagu.................................................................... 1 +seq_361297_x146 ....................ucaccAggugaacacuugcagu.................................................................... 1 +cel-miR-37 ....................ucaccgggugaacacuugcagu.................................................................... 0 +seq_366431_x93 ....................Ccaccgggugaacacuugcagu.................................................................... 1 +seq_376287_x6 ....................ucNccgggugaacacuugcagu.................................................................... 1 +seq_345299_x327 ....................ucaccgggugaacacuugcUgu.................................................................... 1 +seq_354041_x214 ....................uAaccgggugaacacuugcagu.................................................................... 1 +seq_363999_x122 ....................ucaccggguCaacacuugcagu.................................................................... 1 +seq_319013_x1597....................ucacAgggugaacacuugcagu.................................................................... 1 +seq_369126_x62 ....................ucaccgggugaacCcuugcagu.................................................................... 1 +seq_340154_x508 ....................ucaccgggugaacacuGgcagu.................................................................... 1 +seq_366337_x94 ....................ucaccggUugaacacuugcagu.................................................................... 1 +seq_372789_x26 ....................ucaccgggugaGcacuugcagu.................................................................... 1 +seq_364238_x115 ....................Gcaccgggugaacacuugcagu.................................................................... 1 +seq_377843_x1 ....................ucaccgggugaacacuuNcagu.................................................................... 1 +seq_365648_x102 ....................ucaccgggugUacacuugcagu.................................................................... 1 +seq_371480_x36 ....................ucCccgggugaacacuugcagu.................................................................... 1 +seq_362569_x133 ....................ucaccgggugaacacuugUagu.................................................................... 1 +seq_362434_x135 ....................ucaccgggugaacUcuugcagu.................................................................... 1 +seq_368190_x71 ....................Acaccgggugaacacuugcagu.................................................................... 1 +seq_330395_x911 ....................ucaccgggugaaNacuugcagu.................................................................... 1 +seq_370868_x40 ....................ucaccgggugaacGcuugcagu.................................................................... 1 +seq_323285_x1320....................ucaccgggGgaacacuugcagu.................................................................... 1 +seq_358020_x178 ....................ucaccggAugaacacuugcagu.................................................................... 1 +seq_375330_x11 ....................ucaccgggNgaacacuugcagu.................................................................... 1 +seq_369665_x55 ....................ucaccgggugaacacAugcagu.................................................................... 1 +seq_357471_x183 ....................ucaccgggugaacacCugcagu.................................................................... 1 +seq_368539_x67 ....................ucaccgggugaacacuugcGgu.................................................................... 1 +seq_377977_x1 ....................ucaccgggugaacacuugcagGg................................................................... 1 +seq_377822_x1 ....................ucaAcgggugaacacuugcagug................................................................... 1 +seq_377949_x1 ....................ucaccgggugaacacGugcagug................................................................... 1 +seq_373861_x19 ....................ucaccgggugaacacuugcagug................................................................... 0 +seq_373378_x22 ....................ucaccgggugaacacuugcaguC................................................................... 1 +seq_325900_x1251....................ucaccgggugaacacuugcaguA................................................................... 1 +seq_377687_x2 ....................ucaccgggugaacacuugcUgug................................................................... 1 +seq_300758_x2851....................ucaccgggugaacacuugcaguU................................................................... 1 +seq_378118_x1 ....................uAaccgggugaacacuugcagug................................................................... 1 +seq_377256_x3 ....................ucaccgggugaacacuugcagugA.................................................................. 1 +seq_377858_x1 ....................ucaccgggugaacacuugcaguCg.................................................................. 1 +seq_378081_x1 ....................ucaccgggugaacacuugcaguAg.................................................................. 1 +seq_376855_x4 ....................ucaccgggugaacacuugcagugC.................................................................. 1 +seq_378276_x1 ....................ucaccgggugaacacuugcaguUg.................................................................. 1 +seq_377629_x2 ....................ucaccgggugaacacuugcagugg.................................................................. 0 +seq_378008_x1 ....................uUaccgggugaacacuugcaguggu................................................................. 1 +seq_378261_x1 ....................ucaccgggugaacacuugcaguggu................................................................. 0 +seq_377773_x1 ....................ucaccgggugaacacuugcaguggA................................................................. 1 +seq_378246_x1 ....................ucaccgggugaacacuugcagugUu................................................................. 1 +seq_377896_x1 ....................ucaccgggugaacacuugcaguggCc................................................................ 1 +seq_377447_x2 ....................ucaccgggugaacacuugcagugAuc................................................................ 1 +seq_378068_x1 ....................ucaccgggugaacacuugcaguggucA............................................................... 1 +seq_377411_x2 ....................ucaccgggugaacacuugcagugguUc............................................................... 1 +seq_377899_x1 .....................caccgggugaacacuugca...................................................................... 0 +seq_377943_x1 .....................caAcgggugaacacuugcag..................................................................... 1 +seq_373131_x23 .....................caccgggugaacacuugcag..................................................................... 0 +seq_377857_x1 .....................caccgggugaacaUuugcag..................................................................... 1 +seq_377921_x1 .....................cGccgggugaacacuugcag..................................................................... 1 +seq_376755_x4 .....................Uaccgggugaacacuugcagu.................................................................... 1 +seq_378164_x1 .....................caccgggugaacaAuugcagu.................................................................... 1 +seq_376419_x6 .....................caccgggAgaacacuugcagu.................................................................... 1 +seq_377715_x2 .....................caccgggugaacacuCgcagu.................................................................... 1 +seq_378030_x1 .....................caccgggugaacacuGgcagu.................................................................... 1 +seq_378016_x1 .....................caccggguCaacacuugcagu.................................................................... 1 +seq_377022_x3 .....................caccgggugaacacuugcagA.................................................................... 1 +seq_378214_x1 .....................caccgggugaCcacuugcagu.................................................................... 1 +seq_377835_x1 .....................caccgggugaacacNugcagu.................................................................... 1 +seq_378161_x1 .....................cacGgggugaacacuugcagu.................................................................... 1 +seq_374011_x18 .....................caccgggGgaacacuugcagu.................................................................... 1 +seq_377900_x1 .....................cNccgggugaacacuugcagu.................................................................... 1 +seq_376260_x7 .....................caccgggugaaAacuugcagu.................................................................... 1 +seq_348053_x285 .....................caccgggugaacacuugcagu.................................................................... 0 +seq_377795_x1 .....................caccAggugaacacuugcagu.................................................................... 1 +seq_377649_x2 .....................caccgggugaacacuuAcagu.................................................................... 1 +seq_377928_x1 .....................caccgggugaacacGugcagu.................................................................... 1 +seq_378111_x1 .....................caccgggugaacacuAgcagu.................................................................... 1 +seq_377202_x3 .....................caccgggugaacacuugcUgu.................................................................... 1 +seq_377904_x1 .....................cGccgggugaacacuugcagu.................................................................... 1 +seq_378018_x1 .....................caccgggugaacNcuugcagu.................................................................... 1 +seq_378263_x1 .....................caccgggugaaGacuugcagu.................................................................... 1 +seq_377990_x1 .....................cCccgggugaacacuugcagu.................................................................... 1 +seq_376553_x5 .....................caccgggCgaacacuugcagu.................................................................... 1 +seq_376688_x5 .....................caccgggugaacacuugcagC.................................................................... 1 +seq_377461_x2 .....................caccgggugaacacuuCcagu.................................................................... 1 +seq_377804_x1 .....................caccggAugaacacuugcagu.................................................................... 1 +seq_376086_x8 .....................caAcgggugaacacuugcagu.................................................................... 1 +seq_353384_x221 .....................caccgggugaacacuugcaguU................................................................... 1 +seq_378003_x1 .....................caccgggugaacacuugcagCg................................................................... 1 +seq_374439_x16 .....................caccgggugaacacuugcagug................................................................... 0 +seq_361874_x141 .....................caccgggugaacacuugcaguA................................................................... 1 +seq_377286_x3 .....................caccgggugaacacuugcaguC................................................................... 1 +seq_378195_x1 .....................caccgggugaacacuugcagugU.................................................................. 1 +seq_378303_x1 .....................caccgggugaacacuugcagugC.................................................................. 1 +seq_378250_x1 .....................caccgggugaacacuugcaguUg.................................................................. 1 +seq_378188_x1 ......................accgggCgaacacuugca...................................................................... 1 +seq_378220_x1 ......................accgggugaacacAugca...................................................................... 1 +seq_376094_x8 ......................accgggugaacacuugca...................................................................... 0 +seq_370405_x44 ......................accgggugaacacuugcag..................................................................... 0 +seq_377805_x1 ......................accCggugaacacuugcag..................................................................... 1 +seq_377998_x1 ......................accggUugaacacuugcag..................................................................... 1 +seq_378298_x1 ......................accgggugaacacuugcCg..................................................................... 1 +seq_378052_x1 ......................aGcgggugaacacuugcag..................................................................... 1 +seq_377965_x1 ......................accgggCgaacacuugcag..................................................................... 1 +seq_378289_x1 ......................accgggugaacacCugcag..................................................................... 1 +seq_378102_x1 ......................accgggAgaacacuugcag..................................................................... 1 +seq_377184_x3 ......................accgggugaacacuugcagG.................................................................... 1 +seq_378152_x1 ......................accgggugaacaUuugcagu.................................................................... 1 +seq_374359_x16 ......................accgggGgaacacuugcagu.................................................................... 1 +seq_376473_x6 ......................accgCgugaacacuugcagu.................................................................... 1 +seq_377986_x1 ......................accgggugaacacuugGagu.................................................................... 1 +seq_378237_x1 ......................accgggugCacacuugcagu.................................................................... 1 +seq_377721_x2 ......................accgggugaacacuugUagu.................................................................... 1 +seq_375124_x12 ......................accCggugaacacuugcagu.................................................................... 1 +seq_373485_x21 ......................accgggugaacacuuUcagu.................................................................... 1 +seq_375721_x9 ......................accgggugaaAacuugcagu.................................................................... 1 +seq_377713_x2 ......................aAcgggugaacacuugcagu.................................................................... 1 +seq_376951_x4 ......................acAgggugaacacuugcagu.................................................................... 1 +seq_377609_x2 ......................accgggugaacacuAgcagu.................................................................... 1 +seq_377930_x1 ......................accggAugaacacuugcagu.................................................................... 1 +seq_375685_x9 ......................accgggugaacacuugcagC.................................................................... 1 +seq_377847_x1 ......................accgggugaaUacuugcagu.................................................................... 1 +seq_377661_x2 ......................accgggugaacacuGgcagu.................................................................... 1 +seq_333757_x746 ......................accgggugaacacuugcagu.................................................................... 0 +seq_378076_x1 ......................accgggugaacacCugcagu.................................................................... 1 +seq_378101_x1 ......................accgggugaaGacuugcagu.................................................................... 1 +seq_378307_x1 ......................accggCugaacacuugcagu.................................................................... 1 +seq_373108_x23 ......................accgggugaacacuugcCgu.................................................................... 1 +seq_376847_x4 ......................accggguCaacacuugcagu.................................................................... 1 +seq_377789_x1 ......................accgggugaacacuugcaUu.................................................................... 1 +seq_378184_x1 ......................accgggugaacacuugcUgu.................................................................... 1 +seq_377441_x2 ......................accAggugaacacuugcagu.................................................................... 1 +seq_377169_x3 ......................accgggugaacaAuugcagu.................................................................... 1 +seq_377671_x2 ......................accggguAaacacuugcagu.................................................................... 1 +seq_377172_x3 ......................accgAgugaacacuugcagu.................................................................... 1 +seq_375982_x8 ......................accgggugaacacuugcagA.................................................................... 1 +seq_376341_x6 ......................accgggugaacacuugAagu.................................................................... 1 +seq_375148_x12 ......................accgggAgaacacuugcagu.................................................................... 1 +seq_377973_x1 ......................Cccgggugaacacuugcagu.................................................................... 1 +seq_378156_x1 ......................accgggugaacGcuugcagu.................................................................... 1 +seq_377549_x2 ......................accgUgugaacacuugcagu.................................................................... 1 +seq_376598_x5 ......................accgggugaacacuugcaCu.................................................................... 1 +seq_377593_x2 ......................aGcgggugaacacuugcagu.................................................................... 1 +seq_377322_x3 ......................acUgggugaacacuugcagu.................................................................... 1 +seq_376823_x4 ......................accgggugaacCcuugcagu.................................................................... 1 +seq_378201_x1 ......................aUcgggugaacacuugcagu.................................................................... 1 +seq_377160_x3 ......................accggguUaacacuugcagu.................................................................... 1 +seq_378002_x1 ......................accgggugaacacuuAcagu.................................................................... 1 +seq_377226_x3 ......................accgggugaacacuuCcagu.................................................................... 1 +seq_377393_x2 ......................accgggugaacacGugcagu.................................................................... 1 +seq_376971_x4 ......................accgggugaacaNuugcagu.................................................................... 1 +seq_377601_x2 ......................accggUugaacacuugcagu.................................................................... 1 +seq_371920_x33 ......................accgggCgaacacuugcagu.................................................................... 1 +seq_377277_x3 ......................accgggugUacacuugcagu.................................................................... 1 +seq_377385_x2 ......................accUggugaacacuugcagu.................................................................... 1 +seq_377611_x2 ......................accgggugGacacuugcagu.................................................................... 1 +seq_378233_x1 ......................Uccgggugaacacuugcagu.................................................................... 1 +seq_372411_x29 ......................accgggugaacacuugcaguU................................................................... 1 +seq_374519_x16 ......................accgggugaacacuugcaguA................................................................... 1 +seq_378026_x1 ......................accgggugaacacuugcaguUg.................................................................. 1 +seq_378241_x1 .......................Ucgggugaacacuugcag..................................................................... 1 +seq_377861_x1 .......................ccgggugaacacuugcag..................................................................... 0 +seq_377301_x3 .......................ccgggugaacacuugcagu.................................................................... 0 +seq_377407_x2 .......................Ucgggugaacacuugcagu.................................................................... 1 +seq_377810_x1 ........................cgggCgaacacuugcagu.................................................................... 1 +seq_377232_x3 ........................cgggugaacacuugcagu.................................................................... 0 +seq_378012_x1 ........................................................cucugugaUccagguccugu.................................. 1 + + + +>chrII:11534525-11540624_11 +score total 61011.7 +score for star read(s) 3.9 +score for read counts 61001.2 +score for mfe 2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 119663 +mature read count 119545 +loop read count 0 +star read count 118 +exp fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs fffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq uuaaaaucgauucuagaaacccuuggaccaguguggguguccguugcggugcuacauucucuaaucuguaucaccgggugaacacuugcagugguccucgugguuucucu +pri_struct ..............((((((((..((((((.((..(((((....(.(((((.((((..........)))).))))).)...)))))..)).))))))..).))))))).. #MM +seq_378312_x1 .............................aguguggguguccguugcggugcua........................................................ 0 +seq_377115_x3 ..............................guguggguguccguugcggugcu......................................................... 0 +seq_378105_x1 ...............................uguggguguccguugcgg............................................................. 0 +seq_378286_x1 ...............................ugugggGguccguugcggu............................................................ 1 +seq_378185_x1 ...............................uguggguguccguugcUgug........................................................... 1 +seq_378273_x1 ...............................uguggguguccguugcggug........................................................... 0 +seq_378154_x1 ...............................uguggguguccguugcggugc.......................................................... 0 +seq_377931_x1 ...............................uguggguguccguugcggugAu......................................................... 1 +seq_374757_x14 ...............................uguggguguccguugcggugcu......................................................... 0 +seq_378090_x1 ...............................uguggguguccguugAggugcu......................................................... 1 +seq_377449_x2 ...............................ugGggguguccguugcggugcua........................................................ 1 +seq_377794_x1 ...............................uguggguguccguugUggugcua........................................................ 1 +seq_377787_x1 ...............................uguggguguccgGugcggugcua........................................................ 1 +seq_378315_x1 ...............................uguggguguccguugcggCgcua........................................................ 1 +seq_378232_x1 ...............................uguggguCuccguugcggugcua........................................................ 1 +seq_367968_x76 ...............................uguggguguccguugcggugcua........................................................ 0 +seq_378200_x1 ...............................uguggguguccguugcggugcGa........................................................ 1 +seq_377774_x1 ...............................uguggguguccguugcggugUua........................................................ 1 +seq_378038_x1 ...............................ugugggugucAguugcggugcua........................................................ 1 +seq_378322_x1 ...............................uguggguguccguugcggugAua........................................................ 1 +seq_378007_x1 ...............................ugAggguguccguugcggugcua........................................................ 1 +seq_377837_x1 ...............................uguUgguguccguugcggugcua........................................................ 1 +seq_376613_x5 ...............................uguggguguccguugcggugcuU........................................................ 1 +seq_378182_x1 ..................................................................Gguaucaccgggugaacacuugcagu.................. 1 +seq_378210_x1 ....................................................................uaucaccgggugaacacuugca.................... 0 +seq_377082_x3 ....................................................................Aaucaccgggugaacacuugcag................... 1 +seq_376915_x4 ....................................................................uaucaccgggugaacacuugcag................... 0 +seq_378060_x1 ....................................................................uaucaccgggugaacacuugcagu.................. 0 +seq_367062_x87 ....................................................................Aaucaccgggugaacacuugcagu.................. 1 +seq_377289_x3 .....................................................................aucaccgggugaacacuugca.................... 0 +seq_377605_x2 .....................................................................Cucaccgggugaacacuugca.................... 1 +seq_378046_x1 .....................................................................aucaccgggugaacacGugca.................... 1 +seq_377844_x1 .....................................................................aucaccgggugaacacuugcaU................... 1 +seq_373668_x20 .....................................................................aucaccgggugaacacuugcag................... 0 +seq_373177_x23 .....................................................................Uucaccgggugaacacuugcag................... 1 +seq_377762_x1 .....................................................................aucaAcgggugaacacuugcag................... 1 +seq_377747_x1 .....................................................................aucaccgggugaacaAuugcag................... 1 +seq_377997_x1 .....................................................................aucaccgggugaaUacuugcag................... 1 +seq_378288_x1 .....................................................................aucaccgggGgaacacuugcag................... 1 +seq_377521_x2 .....................................................................aucaccgggugaacacuugAagu.................. 1 +seq_376839_x4 .....................................................................aucaccgggGgaacacuugcagu.................. 1 +seq_368805_x66 .....................................................................Cucaccgggugaacacuugcagu.................. 1 +seq_377917_x1 .....................................................................Uucaccgggugaacacuugcagu.................. 1 +seq_378067_x1 .....................................................................aucaccggAugaacacuugcagu.................. 1 +seq_378230_x1 .....................................................................aucaccgggugaacacuugcGgu.................. 1 +seq_377709_x2 .....................................................................aucaccgggugaacacuugcCgu.................. 1 +seq_377954_x1 .....................................................................aucaccgggugaacacuCgcagu.................. 1 +seq_377772_x1 .....................................................................aucaAcgggugaacacuugcagu.................. 1 +seq_377800_x1 .....................................................................aucaccggUugaacacuugcagu.................. 1 +seq_377855_x1 .....................................................................aucaccgggugaacacuugcagA.................. 1 +seq_376775_x4 .....................................................................aucaccgggCgaacacuugcagu.................. 1 +seq_377782_x1 .....................................................................aucaccgggugaacacuugcUgu.................. 1 +seq_377963_x1 .....................................................................auGaccgggugaacacuugcagu.................. 1 +seq_377958_x1 .....................................................................aucaccgCgugaacacuugcagu.................. 1 +seq_376831_x4 .....................................................................aucaccgggAgaacacuugcagu.................. 1 +seq_378177_x1 .....................................................................aucaccgggugaacacuGgcagu.................. 1 +seq_377353_x2 .....................................................................aucaccgggugaacacuugcagC.................. 1 +seq_378037_x1 .....................................................................aucaccgAgugaacacuugcagu.................. 1 +seq_377639_x2 .....................................................................aucaccCggugaacacuugcagu.................. 1 +seq_358376_x178 .....................................................................aucaccgggugaacacuugcagu.................. 0 +seq_378265_x1 .....................................................................aucaccgggugaacCcuugcagu.................. 1 +seq_378165_x1 .....................................................................aucaccgggugaNcacuugcagu.................. 1 +seq_377783_x1 .....................................................................aucaccggCugaacacuugcagu.................. 1 +seq_377109_x3 .....................................................................aucaccgggugaacacuugcaUu.................. 1 +seq_377133_x3 .....................................................................aucaccgggugaacacuugcaguU................. 1 +seq_377527_x2 .....................................................................aucaccgggugaacacuugcaguA................. 1 +seq_377971_x1 ......................................................................ucaAcgggugaacacuug...................... 1 +seq_377445_x2 ......................................................................ucaccgggugaaGacuug...................... 1 +seq_378317_x1 ......................................................................uAaccgggugaacacuug...................... 1 +seq_378106_x1 ......................................................................ucaccgggugaaAacuug...................... 1 +seq_377951_x1 ......................................................................ucaccgggGgaacacuug...................... 1 +seq_378095_x1 ......................................................................Acaccgggugaacacuug...................... 1 +seq_377918_x1 ......................................................................ucaccgggugaacacuuU...................... 1 +seq_373608_x20 ......................................................................ucaccgggugaacacuug...................... 0 +seq_378005_x1 ......................................................................ucaccgggugaCcacuug...................... 1 +seq_378295_x1 ......................................................................ucaccgUgugaacacuug...................... 1 +seq_377897_x1 ......................................................................ucaccgggugaaGacuugc..................... 1 +seq_373012_x24 ......................................................................ucaccgggugaacacuugc..................... 0 +seq_378284_x1 ......................................................................ucaccgggugaacaGuugc..................... 1 +seq_376461_x6 ......................................................................ucaccgAgugaacacuugca.................... 1 +seq_327151_x1237......................................................................ucaccgggugaacacuugca.................... 0 +seq_377912_x1 ......................................................................uNaccgggugaacacuugca.................... 1 +seq_376568_x5 ......................................................................ucaccggCugaacacuugca.................... 1 +seq_377829_x1 ......................................................................ucaccgggugaUcacuugca.................... 1 +seq_377473_x2 ......................................................................ucaccgggugaacacGugca.................... 1 +seq_376653_x5 ......................................................................ucaccUggugaacacuugca.................... 1 +seq_377553_x2 ......................................................................uUaccgggugaacacuugca.................... 1 +seq_377253_x3 ......................................................................ucaccgggugaacUcuugca.................... 1 +seq_377557_x2 ......................................................................ucacUgggugaacacuugca.................... 1 +seq_377830_x1 ......................................................................ucaccgggugaCcacuugca.................... 1 +seq_372988_x24 ......................................................................ucacAgggugaacacuugca.................... 1 +seq_378074_x1 ......................................................................ucaccgggugaaNacuugca.................... 1 +seq_377838_x1 ......................................................................ucaccgggugaacacuuNca.................... 1 +seq_377565_x2 ......................................................................ucaccgggugaacacuugcG.................... 1 +seq_378270_x1 ......................................................................Acaccgggugaacacuugca.................... 1 +seq_376751_x4 ......................................................................ucaccggUugaacacuugca.................... 1 +seq_376735_x4 ......................................................................ucaccgggugaacacuuUca.................... 1 +seq_378080_x1 ......................................................................ucaccgggugGacacuugca.................... 1 +seq_377555_x2 ......................................................................ucaUcgggugaacacuugca.................... 1 +seq_378238_x1 ......................................................................ucaccgggugaacacuCgca.................... 1 +seq_378205_x1 ......................................................................ucaccgggugaacacuugUa.................... 1 +seq_376795_x4 ......................................................................ucGccgggugaacacuugca.................... 1 +seq_377824_x1 ......................................................................Gcaccgggugaacacuugca.................... 1 +seq_377154_x3 ......................................................................ucaccggguUaacacuugca.................... 1 +seq_377335_x2 ......................................................................ucaAcgggugaacacuugca.................... 1 +seq_378299_x1 ......................................................................ucaccgggugaacGcuugca.................... 1 +seq_377405_x2 ......................................................................ucaccgggugaaGacuugca.................... 1 +seq_376543_x5 ......................................................................uGaccgggugaacacuugca.................... 1 +seq_377850_x1 ......................................................................ucaccggNugaacacuugca.................... 1 +seq_377397_x2 ......................................................................ucaccgUgugaacacuugca.................... 1 +seq_376443_x6 ......................................................................ucaccgggugaaUacuugca.................... 1 +seq_376078_x8 ......................................................................ucaccgggGgaacacuugca.................... 1 +seq_376663_x5 ......................................................................ucaccgggugaacacuugcU.................... 1 +seq_375385_x10 ......................................................................ucaccgggugaacacuGgca.................... 1 +seq_376783_x4 ......................................................................ucaccgggugaacacuuAca.................... 1 +seq_378034_x1 ......................................................................ucaccgggugCacacuugca.................... 1 +seq_373975_x18 ......................................................................ucaccgggAgaacacuugca.................... 1 +seq_377802_x1 ......................................................................ucaccgggugaacacCugca.................... 1 +seq_378327_x1 ......................................................................ucaccgggugaacacuugAa.................... 1 +seq_377757_x1 ......................................................................ucaccggguCaacacuugca.................... 1 +seq_376943_x4 ......................................................................ucaccgggugaacaAuugca.................... 1 +seq_377615_x2 ......................................................................uAaccgggugaacacuugca.................... 1 +seq_375883_x9 ......................................................................ucaccgCgugaacacuugca.................... 1 +seq_377821_x1 ......................................................................ucaccgggugaacCcuugca.................... 1 +seq_377148_x3 ......................................................................ucaccgggugaacacuuCca.................... 1 +seq_378321_x1 ......................................................................ucaccCggugaacacuugca.................... 1 +seq_374729_x14 ......................................................................ucaccgggugaaAacuugca.................... 1 +seq_377541_x2 ......................................................................ucaccggAugaacacuugca.................... 1 +seq_377190_x3 ......................................................................ucaccgggugaacacuAgca.................... 1 +seq_377667_x2 ......................................................................ucaGcgggugaacacuugca.................... 1 +seq_377891_x1 ......................................................................ucaccAggugaacacuugca.................... 1 +seq_377046_x3 ......................................................................ucaccgggugaacaGuugca.................... 1 +seq_375220_x11 ......................................................................ucaccgggCgaacacuugca.................... 1 +seq_376573_x5 ......................................................................ucaccgggugaaGacuugcag................... 1 +seq_375990_x8 ......................................................................ucaccggCugaacacuugcag................... 1 +seq_372737_x26 ......................................................................ucaccgCgugaacacuugcag................... 1 +seq_376155_x7 ......................................................................Ccaccgggugaacacuugcag................... 1 +seq_377265_x3 ......................................................................uUaccgggugaacacuugcag................... 1 +seq_376521_x6 ......................................................................uAaccgggugaacacuugcag................... 1 +seq_378103_x1 ......................................................................ucNccgggugaacacuugcag................... 1 +seq_376923_x4 ......................................................................ucaccgggugaacacAugcag................... 1 +seq_375184_x12 ......................................................................ucaccgggugaacacuugcUg................... 1 +seq_377779_x1 ......................................................................ucaccgggugaacaGuugcag................... 1 +seq_377547_x2 ......................................................................ucaccgggugaacacuugcaA................... 1 +seq_377025_x3 ......................................................................ucUccgggugaacacuugcag................... 1 +seq_377788_x1 ......................................................................ucaccgggugaacacuNgcag................... 1 +seq_373937_x19 ......................................................................ucaccgggugaacacuuUcag................... 1 +seq_376563_x5 ......................................................................ucaccgUgugaacacuugcag................... 1 +seq_377651_x2 ......................................................................ucaccgggugaGcacuugcag................... 1 +seq_378132_x1 ......................................................................ucacGgggugaacacuugcag................... 1 +seq_372890_x25 ......................................................................ucaccgggugaacaAuugcag................... 1 +seq_374771_x14 ......................................................................ucaccgggugaacacuGgcag................... 1 +seq_377437_x2 ......................................................................ucaGcgggugaacacuugcag................... 1 +seq_378036_x1 ......................................................................ucaccCggugaacacuugcag................... 1 +seq_376347_x6 ......................................................................ucaccgAgugaacacuugcag................... 1 +seq_377515_x2 ......................................................................ucaccgggugaacCcuugcag................... 1 +seq_376807_x4 ......................................................................ucaccgggugUacacuugcag................... 1 +seq_370787_x41 ......................................................................ucaccgggCgaacacuugcag................... 1 +seq_375308_x11 ......................................................................ucaccgggugaacacCugcag................... 1 +seq_376253_x7 ......................................................................ucaccggguUaacacuugcag................... 1 +seq_378309_x1 ......................................................................ucaccgggugaacacuuAcag................... 1 +seq_367812_x78 ......................................................................ucacAgggugaacacuugcag................... 1 +seq_376931_x4 ......................................................................ucaccgggugGacacuugcag................... 1 +seq_376274_x7 ......................................................................ucaccggguAaacacuugcag................... 1 +seq_376911_x4 ......................................................................ucaccggUugaacacuugcag................... 1 +seq_376126_x8 ......................................................................ucaccUggugaacacuugcag................... 1 +seq_376583_x5 ......................................................................ucaccgggugaacacGugcag................... 1 +seq_372173_x31 ......................................................................ucaccgggugaaNacuugcag................... 1 +seq_376643_x5 ......................................................................ucaccgggugCacacuugcag................... 1 +seq_376668_x5 ......................................................................ucaccgggugaacaUuugcag................... 1 +seq_296962_x3796......................................................................ucaccgggugaacacuugcag................... 0 +seq_375958_x8 ......................................................................ucaccgggugaacacuugUag................... 1 +seq_376588_x5 ......................................................................ucaUcgggugaacacuugcag................... 1 +seq_375793_x9 ......................................................................ucaccgggugaacacuugcCg................... 1 +seq_377729_x2 ......................................................................ucaccgggugaUcacuugcag................... 1 +seq_375415_x10 ......................................................................ucaccgggugaacacuugAag................... 1 +seq_377067_x3 ......................................................................ucaccgggugaCcacuugcag................... 1 +seq_376603_x5 ......................................................................Acaccgggugaacacuugcag................... 1 +seq_376425_x6 ......................................................................ucaccgggugaacacuAgcag................... 1 +seq_376162_x7 ......................................................................Gcaccgggugaacacuugcag................... 1 +seq_377333_x2 ......................................................................uNaccgggugaacacuugcag................... 1 +seq_376070_x8 ......................................................................ucaccgggugaacacuugcaC................... 1 +seq_377786_x1 ......................................................................ucaccgggugaacacuugcGg................... 1 +seq_377723_x2 ......................................................................ucGccgggugaacacuugcag................... 1 +seq_373246_x22 ......................................................................ucaccgggugaaAacuugcag................... 1 +seq_376389_x6 ......................................................................ucaccAggugaacacuugcag................... 1 +seq_377355_x2 ......................................................................ucaccgggugaacacuugGag................... 1 +seq_377295_x3 ......................................................................ucaccgggugaacacuCgcag................... 1 +seq_377435_x2 ......................................................................ucaccggguCaacacuugcag................... 1 +seq_376835_x4 ......................................................................ucaccggAugaacacuugcag................... 1 +seq_378141_x1 ......................................................................ucaccggNugaacacuugcag................... 1 +seq_376204_x7 ......................................................................ucaccgggugaacacuuCcag................... 1 +seq_371788_x33 ......................................................................ucaccgggAgaacacuugcag................... 1 +seq_375535_x10 ......................................................................ucaccgggugaacUcuugcag................... 1 +seq_375766_x9 ......................................................................ucaccgggugaaUacuugcag................... 1 +seq_369371_x60 ......................................................................ucaccgggGgaacacuugcag................... 1 +seq_374375_x16 ......................................................................ucaccgggugaacacuugcaU................... 1 +seq_376983_x4 ......................................................................ucCccgggugaacacuugcag................... 1 +seq_376176_x7 ......................................................................ucaccgggugaacacuugNag................... 1 +seq_376593_x5 ......................................................................uGaccgggugaacacuugcag................... 1 +seq_376190_x7 ......................................................................ucacUgggugaacacuugcag................... 1 +seq_375625_x10 ......................................................................ucaAcgggugaacacuugcag................... 1 +seq_360848_x153 ......................................................................ucaccgAgugaacacuugcagu.................. 1 +seq_375545_x10 ......................................................................ucacNgggugaacacuugcagu.................. 1 +seq_358020_x178 ......................................................................ucaccggAugaacacuugcagu.................. 1 +seq_375330_x11 ......................................................................ucaccgggNgaacacuugcagu.................. 1 +seq_362156_x140 ......................................................................ucaccgggugaacacuugcaCu.................. 1 +seq_323285_x1320......................................................................ucaccgggGgaacacuugcagu.................. 1 +seq_366524_x92 ......................................................................ucaccggguAaacacuugcagu.................. 1 +seq_364238_x115 ......................................................................Gcaccgggugaacacuugcagu.................. 1 +seq_354892_x210 ......................................................................ucaccgggugCacacuugcagu.................. 1 +seq_361001_x150 ......................................................................ucaccgggugaacacuuCcagu.................. 1 +seq_368261_x70 ......................................................................ucaccCggugaacacuugcagu.................. 1 +seq_359745_x162 ......................................................................ucaccgggugGacacuugcagu.................. 1 +seq_345299_x327 ......................................................................ucaccgggugaacacuugcUgu.................. 1 +seq_369126_x62 ......................................................................ucaccgggugaacCcuugcagu.................. 1 +seq_377843_x1 ......................................................................ucaccgggugaacacuuNcagu.................. 1 +seq_369064_x62 ......................................................................ucaccgggugaacacuugcaAu.................. 1 +seq_357471_x183 ......................................................................ucaccgggugaacacCugcagu.................. 1 +seq_362296_x138 ......................................................................ucaccgggugaacacuugcaUu.................. 1 +seq_376287_x6 ......................................................................ucNccgggugaacacuugcagu.................. 1 +seq_372789_x26 ......................................................................ucaccgggugaGcacuugcagu.................. 1 +cel-miR-37 ......................................................................ucaccgggugaacacuugcagu.................. 0 +seq_371028_x39 ......................................................................ucaccgggugaacaGuugcagu.................. 1 +seq_367490_x83 ......................................................................uNaccgggugaacacuugcagu.................. 1 +seq_357284_x187 ......................................................................ucaccgggugaacacuugcagA.................. 1 +seq_341170_x448 ......................................................................ucaccgggugaacacuuUcagu.................. 1 +seq_332159_x841 ......................................................................ucaccgggAgaacacuugcagu.................. 1 +seq_342045_x391 ......................................................................ucaccgggugaacacuugcCgu.................. 1 +seq_370868_x40 ......................................................................ucaccgggugaacGcuugcagu.................. 1 +seq_372468_x28 ......................................................................ucaccgggugaUcacuugcagu.................. 1 +seq_335193_x686 ......................................................................ucaccgggugaaAacuugcagu.................. 1 +seq_361297_x146 ......................................................................ucaccAggugaacacuugcagu.................. 1 +seq_330395_x911 ......................................................................ucaccgggugaaNacuugcagu.................. 1 +seq_341618_x427 ......................................................................ucaccgggugaacaAuugcagu.................. 1 +seq_371222_x38 ......................................................................ucaccggNugaacacuugcagu.................. 1 +seq_356323_x196 ......................................................................ucaccgggugaaUacuugcagu.................. 1 +seq_352711_x226 ......................................................................ucaccgggugaaGacuugcagu.................. 1 +seq_362434_x135 ......................................................................ucaccgggugaacUcuugcagu.................. 1 +seq_349174_x270 ......................................................................ucaccgggugaacacuugcagC.................. 1 +seq_363749_x128 ......................................................................ucaUcgggugaacacuugcagu.................. 1 +seq_354041_x214 ......................................................................uAaccgggugaacacuugcagu.................. 1 +seq_365022_x107 ......................................................................uUaccgggugaacacuugcagu.................. 1 +seq_331306_x853 ......................................................................ucaccgggCgaacacuugcagu.................. 1 +seq_363491_x129 ......................................................................ucaccgggugaacacuuAcagu.................. 1 +seq_366431_x93 ......................................................................Ccaccgggugaacacuugcagu.................. 1 +seq_335879_x674 ......................................................................ucaccgCgugaacacuugcagu.................. 1 +seq_365648_x102 ......................................................................ucaccgggugUacacuugcagu.................. 1 +seq_371260_x37 ......................................................................ucaccgggugaacacuugGagu.................. 1 +seq_363999_x122 ......................................................................ucaccggguCaacacuugcagu.................. 1 +seq_375694_x9 ......................................................................Ncaccgggugaacacuugcagu.................. 1 +seq_368190_x71 ......................................................................Acaccgggugaacacuugcagu.................. 1 +seq_354469_x212 ......................................................................ucaccggguUaacacuugcagu.................. 1 +seq_358731_x174 ......................................................................ucaccgggugaacacuAgcagu.................. 1 +seq_360693_x155 ......................................................................ucaccgggugaacacuugNagu.................. 1 +seq_375565_x10 ......................................................................ucaNcgggugaacacuugcagu.................. 1 +seq_363098_x131 ......................................................................ucaccgggugaacacGugcagu.................. 1 +seq_319013_x1597......................................................................ucacAgggugaacacuugcagu.................. 1 +seq_356905_x190 ......................................................................ucaccUggugaacacuugcagu.................. 1 +seq_340154_x508 ......................................................................ucaccgggugaacacuGgcagu.................. 1 +seq_355311_x207 ......................................................................ucaccggCugaacacuugcagu.................. 1 +seq_149538_x90904......................................................................ucaccgggugaacacuugcagu.................. 0 +seq_366051_x97 ......................................................................ucaccgggugaacaUuugcagu.................. 1 +seq_373223_x23 ......................................................................ucacGgggugaacacuugcagu.................. 1 +seq_364468_x114 ......................................................................ucaccgUgugaacacuugcagu.................. 1 +seq_375974_x8 ......................................................................ucUccgggugaacacuugcagu.................. 1 +seq_363877_x122 ......................................................................ucaccgggugaacacuNgcagu.................. 1 +seq_368539_x67 ......................................................................ucaccgggugaacacuugcGgu.................. 1 +seq_377118_x3 ......................................................................ucaccNggugaacacuugcagu.................. 1 +seq_344621_x340 ......................................................................ucaAcgggugaacacuugcagu.................. 1 +seq_367149_x86 ......................................................................ucaGcgggugaacacuugcagu.................. 1 +seq_372496_x27 ......................................................................ucGccgggugaacacuugcagu.................. 1 +seq_369665_x55 ......................................................................ucaccgggugaacacAugcagu.................. 1 +seq_366337_x94 ......................................................................ucaccggUugaacacuugcagu.................. 1 +seq_362569_x133 ......................................................................ucaccgggugaacacuugUagu.................. 1 +seq_365339_x104 ......................................................................ucaccgggugaacacuugAagu.................. 1 +seq_369188_x61 ......................................................................ucaccgggugaCcacuugcagu.................. 1 +seq_371480_x36 ......................................................................ucCccgggugaacacuugcagu.................. 1 +seq_351534_x242 ......................................................................ucaccgggugaacacuugcagG.................. 1 +seq_365129_x106 ......................................................................ucacUgggugaacacuugcagu.................. 1 +seq_365443_x103 ......................................................................uGaccgggugaacacuugcagu.................. 1 +seq_359076_x170 ......................................................................ucaccgggugaacacuCgcagu.................. 1 +seq_300758_x2851......................................................................ucaccgggugaacacuugcaguU................. 1 +seq_377949_x1 ......................................................................ucaccgggugaacacGugcagug................. 1 +seq_377822_x1 ......................................................................ucaAcgggugaacacuugcagug................. 1 +seq_373861_x19 ......................................................................ucaccgggugaacacuugcagug................. 0 +seq_373378_x22 ......................................................................ucaccgggugaacacuugcaguC................. 1 +seq_377687_x2 ......................................................................ucaccgggugaacacuugcUgug................. 1 +seq_377977_x1 ......................................................................ucaccgggugaacacuugcagGg................. 1 +seq_378118_x1 ......................................................................uAaccgggugaacacuugcagug................. 1 +seq_325900_x1251......................................................................ucaccgggugaacacuugcaguA................. 1 +seq_376855_x4 ......................................................................ucaccgggugaacacuugcagugC................ 1 +seq_377858_x1 ......................................................................ucaccgggugaacacuugcaguCg................ 1 +seq_378276_x1 ......................................................................ucaccgggugaacacuugcaguUg................ 1 +seq_377629_x2 ......................................................................ucaccgggugaacacuugcagugg................ 0 +seq_378081_x1 ......................................................................ucaccgggugaacacuugcaguAg................ 1 +seq_377256_x3 ......................................................................ucaccgggugaacacuugcagugA................ 1 +seq_378246_x1 ......................................................................ucaccgggugaacacuugcagugUu............... 1 +seq_378008_x1 ......................................................................uUaccgggugaacacuugcaguggu............... 1 +seq_378261_x1 ......................................................................ucaccgggugaacacuugcaguggu............... 0 +seq_377773_x1 ......................................................................ucaccgggugaacacuugcaguggA............... 1 +seq_377896_x1 ......................................................................ucaccgggugaacacuugcaguggCc.............. 1 +seq_377447_x2 ......................................................................ucaccgggugaacacuugcagugAuc.............. 1 +seq_377411_x2 ......................................................................ucaccgggugaacacuugcagugguUc............. 1 +seq_378068_x1 ......................................................................ucaccgggugaacacuugcaguggucA............. 1 +seq_377899_x1 .......................................................................caccgggugaacacuugca.................... 0 +seq_373131_x23 .......................................................................caccgggugaacacuugcag................... 0 +seq_377921_x1 .......................................................................cGccgggugaacacuugcag................... 1 +seq_377857_x1 .......................................................................caccgggugaacaUuugcag................... 1 +seq_377943_x1 .......................................................................caAcgggugaacacuugcag................... 1 +seq_378214_x1 .......................................................................caccgggugaCcacuugcagu.................. 1 +seq_374011_x18 .......................................................................caccgggGgaacacuugcagu.................. 1 +seq_377835_x1 .......................................................................caccgggugaacacNugcagu.................. 1 +seq_378263_x1 .......................................................................caccgggugaaGacuugcagu.................. 1 +seq_378018_x1 .......................................................................caccgggugaacNcuugcagu.................. 1 +seq_376086_x8 .......................................................................caAcgggugaacacuugcagu.................. 1 +seq_377900_x1 .......................................................................cNccgggugaacacuugcagu.................. 1 +seq_377928_x1 .......................................................................caccgggugaacacGugcagu.................. 1 +seq_377461_x2 .......................................................................caccgggugaacacuuCcagu.................. 1 +seq_376688_x5 .......................................................................caccgggugaacacuugcagC.................. 1 +seq_376260_x7 .......................................................................caccgggugaaAacuugcagu.................. 1 +seq_378164_x1 .......................................................................caccgggugaacaAuugcagu.................. 1 +seq_377715_x2 .......................................................................caccgggugaacacuCgcagu.................. 1 +seq_378016_x1 .......................................................................caccggguCaacacuugcagu.................. 1 +seq_376755_x4 .......................................................................Uaccgggugaacacuugcagu.................. 1 +seq_377795_x1 .......................................................................caccAggugaacacuugcagu.................. 1 +seq_377649_x2 .......................................................................caccgggugaacacuuAcagu.................. 1 +seq_376553_x5 .......................................................................caccgggCgaacacuugcagu.................. 1 +seq_377804_x1 .......................................................................caccggAugaacacuugcagu.................. 1 +seq_378111_x1 .......................................................................caccgggugaacacuAgcagu.................. 1 +seq_377022_x3 .......................................................................caccgggugaacacuugcagA.................. 1 +seq_378030_x1 .......................................................................caccgggugaacacuGgcagu.................. 1 +seq_376419_x6 .......................................................................caccgggAgaacacuugcagu.................. 1 +seq_377990_x1 .......................................................................cCccgggugaacacuugcagu.................. 1 +seq_348053_x285 .......................................................................caccgggugaacacuugcagu.................. 0 +seq_377904_x1 .......................................................................cGccgggugaacacuugcagu.................. 1 +seq_377202_x3 .......................................................................caccgggugaacacuugcUgu.................. 1 +seq_378161_x1 .......................................................................cacGgggugaacacuugcagu.................. 1 +seq_378003_x1 .......................................................................caccgggugaacacuugcagCg................. 1 +seq_353384_x221 .......................................................................caccgggugaacacuugcaguU................. 1 +seq_361874_x141 .......................................................................caccgggugaacacuugcaguA................. 1 +seq_374439_x16 .......................................................................caccgggugaacacuugcagug................. 0 +seq_377286_x3 .......................................................................caccgggugaacacuugcaguC................. 1 +seq_378303_x1 .......................................................................caccgggugaacacuugcagugC................ 1 +seq_378195_x1 .......................................................................caccgggugaacacuugcagugU................ 1 +seq_378250_x1 .......................................................................caccgggugaacacuugcaguUg................ 1 +seq_376094_x8 ........................................................................accgggugaacacuugca.................... 0 +seq_378188_x1 ........................................................................accgggCgaacacuugca.................... 1 +seq_378220_x1 ........................................................................accgggugaacacAugca.................... 1 +seq_378102_x1 ........................................................................accgggAgaacacuugcag................... 1 +seq_377805_x1 ........................................................................accCggugaacacuugcag................... 1 +seq_378298_x1 ........................................................................accgggugaacacuugcCg................... 1 +seq_377965_x1 ........................................................................accgggCgaacacuugcag................... 1 +seq_370405_x44 ........................................................................accgggugaacacuugcag................... 0 +seq_378289_x1 ........................................................................accgggugaacacCugcag................... 1 +seq_377998_x1 ........................................................................accggUugaacacuugcag................... 1 +seq_378052_x1 ........................................................................aGcgggugaacacuugcag................... 1 +seq_377609_x2 ........................................................................accgggugaacacuAgcagu.................. 1 +seq_377671_x2 ........................................................................accggguAaacacuugcagu.................. 1 +seq_378237_x1 ........................................................................accgggugCacacuugcagu.................. 1 +seq_375721_x9 ........................................................................accgggugaaAacuugcagu.................. 1 +seq_333757_x746 ........................................................................accgggugaacacuugcagu.................. 0 +seq_378184_x1 ........................................................................accgggugaacacuugcUgu.................. 1 +seq_377441_x2 ........................................................................accAggugaacacuugcagu.................. 1 +seq_378101_x1 ........................................................................accgggugaaGacuugcagu.................. 1 +seq_377611_x2 ........................................................................accgggugGacacuugcagu.................. 1 +seq_377721_x2 ........................................................................accgggugaacacuugUagu.................. 1 +seq_378156_x1 ........................................................................accgggugaacGcuugcagu.................. 1 +seq_376847_x4 ........................................................................accggguCaacacuugcagu.................. 1 +seq_377385_x2 ........................................................................accUggugaacacuugcagu.................. 1 +seq_378307_x1 ........................................................................accggCugaacacuugcagu.................. 1 +seq_378076_x1 ........................................................................accgggugaacacCugcagu.................. 1 +seq_376823_x4 ........................................................................accgggugaacCcuugcagu.................. 1 +seq_375685_x9 ........................................................................accgggugaacacuugcagC.................. 1 +seq_377160_x3 ........................................................................accggguUaacacuugcagu.................. 1 +seq_377661_x2 ........................................................................accgggugaacacuGgcagu.................. 1 +seq_377601_x2 ........................................................................accggUugaacacuugcagu.................. 1 +seq_377172_x3 ........................................................................accgAgugaacacuugcagu.................. 1 +seq_376473_x6 ........................................................................accgCgugaacacuugcagu.................. 1 +seq_375982_x8 ........................................................................accgggugaacacuugcagA.................. 1 +seq_373108_x23 ........................................................................accgggugaacacuugcCgu.................. 1 +seq_377549_x2 ........................................................................accgUgugaacacuugcagu.................. 1 +seq_375124_x12 ........................................................................accCggugaacacuugcagu.................. 1 +seq_377226_x3 ........................................................................accgggugaacacuuCcagu.................. 1 +seq_377847_x1 ........................................................................accgggugaaUacuugcagu.................. 1 +seq_377973_x1 ........................................................................Cccgggugaacacuugcagu.................. 1 +seq_378201_x1 ........................................................................aUcgggugaacacuugcagu.................. 1 +seq_373485_x21 ........................................................................accgggugaacacuuUcagu.................. 1 +seq_377169_x3 ........................................................................accgggugaacaAuugcagu.................. 1 +seq_376598_x5 ........................................................................accgggugaacacuugcaCu.................. 1 +seq_377277_x3 ........................................................................accgggugUacacuugcagu.................. 1 +seq_371920_x33 ........................................................................accgggCgaacacuugcagu.................. 1 +seq_376971_x4 ........................................................................accgggugaacaNuugcagu.................. 1 +seq_377789_x1 ........................................................................accgggugaacacuugcaUu.................. 1 +seq_377184_x3 ........................................................................accgggugaacacuugcagG.................. 1 +seq_374359_x16 ........................................................................accgggGgaacacuugcagu.................. 1 +seq_377393_x2 ........................................................................accgggugaacacGugcagu.................. 1 +seq_378233_x1 ........................................................................Uccgggugaacacuugcagu.................. 1 +seq_377986_x1 ........................................................................accgggugaacacuugGagu.................. 1 +seq_378002_x1 ........................................................................accgggugaacacuuAcagu.................. 1 +seq_377593_x2 ........................................................................aGcgggugaacacuugcagu.................. 1 +seq_378152_x1 ........................................................................accgggugaacaUuugcagu.................. 1 +seq_377713_x2 ........................................................................aAcgggugaacacuugcagu.................. 1 +seq_375148_x12 ........................................................................accgggAgaacacuugcagu.................. 1 +seq_376951_x4 ........................................................................acAgggugaacacuugcagu.................. 1 +seq_377322_x3 ........................................................................acUgggugaacacuugcagu.................. 1 +seq_376341_x6 ........................................................................accgggugaacacuugAagu.................. 1 +seq_377930_x1 ........................................................................accggAugaacacuugcagu.................. 1 +seq_374519_x16 ........................................................................accgggugaacacuugcaguA................. 1 +seq_372411_x29 ........................................................................accgggugaacacuugcaguU................. 1 +seq_378026_x1 ........................................................................accgggugaacacuugcaguUg................ 1 +seq_377861_x1 .........................................................................ccgggugaacacuugcag................... 0 +seq_378241_x1 .........................................................................Ucgggugaacacuugcag................... 1 +seq_377301_x3 .........................................................................ccgggugaacacuugcagu.................. 0 +seq_377407_x2 .........................................................................Ucgggugaacacuugcagu.................. 1 +seq_377810_x1 ..........................................................................cgggCgaacacuugcagu.................. 1 +seq_377232_x3 ..........................................................................cgggugaacacuugcagu.................. 0 + + + +>chrII:11534525-11540624_17 +score total 17007.3 +score for star read(s) 3.9 +score for read counts 16996.7 +score for mfe 2.1 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 33350 +mature read count 33300 +loop read count 0 +star read count 50 +exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq uggugucuccgaaccuccuguccgcaccucaguggauguaugccaugaugauaagauaucagaaauccuaucaccggguguacaucagcuaaggugcggguacaggugcau +pri_struct .(((........))).(((((((((((((.(((.((((((((((.((.(((((.(((.......))).))))).)))))))))))).))).))))))))..)))))..... #MM +seq_377533_x2 ..............................aguggauguaugccaugaugau........................................................... 0 +seq_378330_x1 ..............................aguggUuguaugccaugaugaua.......................................................... 1 +seq_372324_x29 ..............................aguggauguaugccaugaugaua.......................................................... 0 +seq_377836_x1 ..............................aguggauguaugccaugUugaua.......................................................... 1 +seq_377982_x1 ..............................aguggauguaugcUaugaugaua.......................................................... 1 +seq_377969_x1 ..............................aguggauguaugccaugaAgaua.......................................................... 1 +seq_377763_x1 ..............................aguggauguaugccauUaugaua.......................................................... 1 +seq_378104_x1 ..............................aguggauguUugccaugaugaua.......................................................... 1 +seq_377950_x1 ..............................aguggauguauUccaugaugaua.......................................................... 1 +seq_378126_x1 ..............................aguggauguaugccaugaugauG.......................................................... 1 +seq_378062_x1 ..............................aguggauguaugccaugaugCua.......................................................... 1 +seq_377681_x2 ..............................aguggaugGaugccaugaugaua.......................................................... 1 +seq_377987_x1 ..............................aguggauguaugccaugaugGua.......................................................... 1 +seq_376329_x6 ..............................aguggauguaugccaugaugauaU......................................................... 1 +seq_378173_x1 ...............................guggauguaugccaugaugauaaga....................................................... 0 +seq_378011_x1 ..................................................................ccGaucaccggguguacaucagcu..................... 1 +seq_377862_x1 ...................................................................cuaucaccggguguacaucag....................... 0 +seq_377748_x1 ...................................................................Auaucaccggguguacaucagc...................... 1 +seq_375595_x10 ...................................................................cuaucaccggguguacaucagc...................... 0 +seq_377699_x2 ...................................................................cuaucaccggguguacaucagcu..................... 0 +seq_377832_x1 ...................................................................cuaucaccggguguacaucagUu..................... 1 +seq_378096_x1 ...................................................................cuaucaccggguguacaGcagcu..................... 1 +seq_377817_x1 ...................................................................cuaucaccggguguacaucagcA..................... 1 +seq_378035_x1 ...................................................................cCaucaccggguguacaucagcuaa................... 1 +seq_377679_x2 ....................................................................Aaucaccggguguacaucagcu..................... 1 +seq_369825_x52 ....................................................................Aaucaccggguguacaucagcuaa................... 1 +seq_377760_x1 .....................................................................aucaccggguguacaucag....................... 0 +seq_378000_x1 .....................................................................Cucaccggguguacaucagcua.................... 1 +seq_378278_x1 .....................................................................aucaccggguguacaucaCcua.................... 1 +seq_376431_x6 .....................................................................aucaccggguguacaucagcua.................... 0 +seq_377784_x1 .....................................................................aucaccggguguacaucaUcuaa................... 1 +seq_371721_x34 .....................................................................aucaccggguguacaucagcuaa................... 0 +seq_378142_x1 .....................................................................aGcaccggguguacaucagcuaa................... 1 +seq_378021_x1 .....................................................................aAcaccggguguacaucagcuaa................... 1 +seq_377769_x1 .....................................................................aucaccgggAguacaucagcuaa................... 1 +seq_374423_x16 .....................................................................Cucaccggguguacaucagcuaa................... 1 +seq_378169_x1 .....................................................................aucaccCgguguacaucagcuaa................... 1 +seq_377968_x1 .....................................................................aucaAcggguguacaucagcuaa................... 1 +seq_377627_x2 .....................................................................aucaccggguguacaucagcuaaA.................. 1 +seq_377489_x2 .....................................................................aucaccggguguacaucagcuaaU.................. 1 +seq_378296_x1 ......................................................................ucaccggUuguacaucag....................... 1 +seq_377770_x1 ......................................................................ucaccggguguacaucNg....................... 1 +seq_377477_x2 ......................................................................ucaccggguguacaucaA....................... 1 +seq_372550_x27 ......................................................................ucaccggguguacaucag....................... 0 +seq_368936_x64 ......................................................................ucaccggguguacaucagc...................... 0 +seq_377979_x1 ......................................................................ucaccggguguaNaucagc...................... 1 +seq_377984_x1 ......................................................................ucaccggguguacaucaUc...................... 1 +seq_377865_x1 ......................................................................ucaccggguguacaucaAc...................... 1 +seq_377751_x1 ......................................................................ucaccgggCguacaucagc...................... 1 +seq_378287_x1 ......................................................................ucaccgggugGacaucagc...................... 1 +seq_377845_x1 ......................................................................ucaccgggGguacaucagc...................... 1 +seq_377833_x1 ......................................................................ucaccgggugCacaucagc...................... 1 +seq_378221_x1 ......................................................................ucaccggguguacCucagc...................... 1 +seq_378110_x1 ......................................................................ucacUggguguacaucagc...................... 1 +seq_377981_x1 ......................................................................ucaccggguguaUaucagcu..................... 1 +seq_378183_x1 ......................................................................ucaccggguguaNaucagcu..................... 1 +seq_378231_x1 ......................................................................ucaccggguguacaucagGu..................... 1 +seq_377689_x2 ......................................................................ucaccggguguacaucaUcu..................... 1 +seq_378193_x1 ......................................................................ucaccggguguacaGcagcu..................... 1 +seq_377823_x1 ......................................................................ucaccgggugCacaucagcu..................... 1 +seq_377826_x1 ......................................................................ucaccgggCguacaucagcu..................... 1 +seq_357837_x183 ......................................................................ucaccggguguacaucagcu..................... 0 +seq_378217_x1 ......................................................................ucaccgggGguacaucagcu..................... 1 +seq_377799_x1 ......................................................................ucaccggguguacauAagcu..................... 1 +seq_377485_x2 ......................................................................ucaccgggugGacaucagcu..................... 1 +seq_377942_x1 ......................................................................ucaccgggugAacaucagcu..................... 1 +seq_376359_x6 ......................................................................ucacAggguguacaucagcu..................... 1 +seq_378125_x1 ......................................................................ucaccggguguacUucagcu..................... 1 +seq_377759_x1 ......................................................................ucaccggguguacaucagUu..................... 1 +seq_378324_x1 ......................................................................ucaccggguguacaCcagcu..................... 1 +seq_378274_x1 ......................................................................ucaccUgguguacaucagcu..................... 1 +seq_377967_x1 ......................................................................ucaccggguguacaucaCcua.................... 1 +seq_375775_x9 ......................................................................ucaccgggugCacaucagcua.................... 1 +seq_377926_x1 ......................................................................ucaccggguguacaucUgcua.................... 1 +seq_377028_x3 ......................................................................ucaccggguguacaucagNua.................... 1 +seq_377911_x1 ......................................................................ucaccggguCuacaucagcua.................... 1 +seq_377625_x2 ......................................................................ucaccggguguaUaucagcua.................... 1 +seq_377735_x2 ......................................................................ucaccggguguaGaucagcua.................... 1 +seq_378240_x1 ......................................................................ucaccggguguacauGagcua.................... 1 +seq_377703_x2 ......................................................................Gcaccggguguacaucagcua.................... 1 +seq_376299_x6 ......................................................................ucaccgggCguacaucagcua.................... 1 +seq_377091_x3 ......................................................................ucaccggguguacaucagcuC.................... 1 +seq_378044_x1 ......................................................................ucaccggguguacaGcagcua.................... 1 +seq_377016_x3 ......................................................................ucaccgggugGacaucagcua.................... 1 +seq_377040_x3 ......................................................................ucaccgggugAacaucagcua.................... 1 +seq_377587_x2 ......................................................................ucaccggguguacaucagcGa.................... 1 +seq_377677_x2 ......................................................................ucaccggguUuacaucagcua.................... 1 +seq_377316_x3 ......................................................................ucaccggguguacaucagcAa.................... 1 +seq_378223_x1 ......................................................................ucaccggguAuacaucagcua.................... 1 +seq_378198_x1 ......................................................................ucaccggguguacaucagGua.................... 1 +seq_374137_x18 ......................................................................ucaccgggAguacaucagcua.................... 1 +seq_378149_x1 ......................................................................uAaccggguguacaucagcua.................... 1 +seq_328388_x1017......................................................................ucaccggguguacaucagcua.................... 0 +seq_377771_x1 ......................................................................ucaccggguguCcaucagcua.................... 1 +seq_372264_x30 ......................................................................ucacAggguguacaucagcua.................... 1 +seq_377922_x1 ......................................................................ucaAcggguguacaucagcua.................... 1 +seq_376558_x5 ......................................................................ucaccggguguacaucagcuU.................... 1 +seq_376843_x4 ......................................................................ucaccggguguacaucagAua.................... 1 +seq_376239_x7 ......................................................................ucaccggguguaNaucagcua.................... 1 +seq_378048_x1 ......................................................................ucaccggAuguacaucagcua.................... 1 +seq_378097_x1 ......................................................................Ccaccggguguacaucagcua.................... 1 +seq_377864_x1 ......................................................................ucaccggguguacUucagcua.................... 1 +seq_378235_x1 ......................................................................ucaccAgguguacaucagcua.................... 1 +seq_376467_x6 ......................................................................ucaccggguguacaucaUcua.................... 1 +seq_377501_x2 ......................................................................ucaccggguguacaucaAcua.................... 1 +seq_378310_x1 ......................................................................ucaccggguguacaucagcuG.................... 1 +seq_376967_x4 ......................................................................ucaccggguguacaucCgcua.................... 1 +seq_378279_x1 ......................................................................ucaGcggguguacaucagcua.................... 1 +seq_377337_x2 ......................................................................uUaccggguguacaucagcua.................... 1 +seq_375319_x11 ......................................................................ucaccgggGguacaucagcua.................... 1 +seq_378227_x1 ......................................................................Ncaccggguguacaucagcua.................... 1 +seq_378166_x1 ......................................................................ucaccggguguacaucagcCa.................... 1 +seq_377262_x3 ......................................................................ucaccgCguguacaucagcua.................... 1 +seq_377043_x3 ......................................................................ucaccggguguacaucagUua.................... 1 +seq_378148_x1 ......................................................................ucaccggguguacGucagcua.................... 1 +seq_376883_x4 ......................................................................ucaccggguguacauAagcua.................... 1 +seq_377244_x3 ......................................................................ucaccggguguaAaucagcua.................... 1 +seq_377139_x3 ......................................................................ucacUggguguacaucagcua.................... 1 +seq_378225_x1 ......................................................................ucaNcggguguacaucagcua.................... 1 +seq_376919_x4 ......................................................................ucaccUgguguacaucagcua.................... 1 +seq_377223_x3 ......................................................................ucaccggCuguacaucagcua.................... 1 +seq_367890_x78 ......................................................................ucaccggguguaAaucagcuaa................... 1 +seq_344961_x338 ......................................................................ucaccggguguacaucagcuaU................... 1 +seq_370908_x40 ......................................................................ucaccggAuguacaucagcuaa................... 1 +seq_372049_x31 ......................................................................ucaccAgguguacaucagcuaa................... 1 +seq_375374_x11 ......................................................................ucaccggguguacGucagcuaa................... 1 +seq_370360_x45 ......................................................................ucaccggguguacaucagcuUa................... 1 +seq_371334_x37 ......................................................................ucaUcggguguacaucagcuaa................... 1 +seq_376365_x6 ......................................................................ucaccggguguacauGagcuaa................... 1 +seq_372964_x24 ......................................................................ucaccggguguacaucagcGaa................... 1 +seq_374869_x13 ......................................................................ucaccggguguUcaucagcuaa................... 1 +seq_375352_x11 ......................................................................ucaccggguguCcaucagcuaa................... 1 +seq_355926_x199 ......................................................................ucaccggguguacaucaUcuaa................... 1 +seq_352937_x224 ......................................................................ucaccgggCguacaucagcuaa................... 1 +seq_377737_x2 ......................................................................ucNccggguguacaucagcuaa................... 1 +seq_360066_x159 ......................................................................ucaccgggAguacaucagcuaa................... 1 +seq_370622_x42 ......................................................................ucaccggguUuacaucagcuaa................... 1 +seq_371585_x34 ......................................................................ucaccUgguguacaucagcuaa................... 1 +seq_374241_x17 ......................................................................ucaGcggguguacaucagcuaa................... 1 +seq_240442_x25577......................................................................ucaccggguguacaucagcuaa................... 0 +seq_373527_x21 ......................................................................uNaccggguguacaucagcuaa................... 1 +seq_342825_x384 ......................................................................ucacAggguguacaucagcuaa................... 1 +seq_370080_x48 ......................................................................uAaccggguguacaucagcuaa................... 1 +seq_378040_x1 ......................................................................ucaccgggNguacaucagcuaa................... 1 +seq_369773_x52 ......................................................................ucaccggguguaUaucagcuaa................... 1 +cel-miR-40 ......................................................................ucaccggguguacaucagcuaa................... 0 +seq_374785_x14 ......................................................................ucCccggguguacaucagcuaa................... 1 +seq_368871_x65 ......................................................................ucaAcggguguacaucagcuaa................... 1 +seq_349713_x268 ......................................................................ucaccggguguaNaucagcuaa................... 1 +seq_374841_x14 ......................................................................ucaccggguguacaucagcAaa................... 1 +seq_371619_x34 ......................................................................ucacUggguguacaucagcuaa................... 1 +seq_375585_x10 ......................................................................ucaccggguguacaucagGuaa................... 1 +seq_370828_x40 ......................................................................ucaccggCuguacaucagcuaa................... 1 +seq_372915_x25 ......................................................................ucaccggguguacCucagcuaa................... 1 +seq_370449_x44 ......................................................................uUaccggguguacaucagcuaa................... 1 +seq_372111_x31 ......................................................................ucaccggguCuacaucagcuaa................... 1 +seq_372604_x27 ......................................................................uGaccggguguacaucagcuaa................... 1 +seq_368331_x70 ......................................................................ucaccggguguacaucagAuaa................... 1 +seq_376698_x5 ......................................................................ucaNcggguguacaucagcuaa................... 1 +seq_375515_x10 ......................................................................ucaccggguguacaucagcCaa................... 1 +seq_368401_x69 ......................................................................ucaccggguguacaucaCcuaa................... 1 +seq_374487_x16 ......................................................................Gcaccggguguacaucagcuaa................... 1 +seq_370222_x46 ......................................................................ucaccggguguacaucagNuaa................... 1 +seq_374155_x18 ......................................................................ucaccggguAuacaucagcuaa................... 1 +seq_374999_x13 ......................................................................ucaccCgguguacaucagcuaa................... 1 +seq_373648_x20 ......................................................................Ccaccggguguacaucagcuaa................... 1 +seq_366797_x89 ......................................................................ucaccggguguacaucagcuaC................... 1 +seq_375363_x11 ......................................................................ucaccggguguGcaucagcuaa................... 1 +seq_371145_x39 ......................................................................ucaccggguguacaucagcuGa................... 1 +seq_347479_x287 ......................................................................ucaccgggGguacaucagcuaa................... 1 +seq_376713_x5 ......................................................................ucUccggguguacaucagcuaa................... 1 +seq_375966_x8 ......................................................................ucGccggguguacaucagcuaa................... 1 +seq_375038_x13 ......................................................................Acaccggguguacaucagcuaa................... 1 +seq_351287_x247 ......................................................................ucaccgggugGacaucagcuaa................... 1 +seq_371953_x32 ......................................................................ucaccgAguguacaucagcuaa................... 1 +seq_377058_x3 ......................................................................Ncaccggguguacaucagcuaa................... 1 +seq_370314_x46 ......................................................................ucaccggguguacaucGgcuaa................... 1 +seq_375665_x10 ......................................................................ucaccggguguacaCcagcuaa................... 1 +seq_375865_x9 ......................................................................ucaccggNuguacaucagcuaa................... 1 +seq_367573_x83 ......................................................................ucaccggguguacaucagcuCa................... 1 +seq_364353_x115 ......................................................................ucaccgCguguacaucagcuaa................... 1 +seq_369249_x61 ......................................................................ucaccggguguaGaucagcuaa................... 1 +seq_369877_x52 ......................................................................ucaccggguguacaucUgcuaa................... 1 +seq_369720_x53 ......................................................................ucaccggguguacaucaAcuaa................... 1 +seq_374101_x18 ......................................................................ucaccggUuguacaucagcuaa................... 1 +seq_367406_x84 ......................................................................ucaccggguguacaucCgcuaa................... 1 +seq_369490_x59 ......................................................................ucaccgggugAacaucagcuaa................... 1 +seq_375703_x9 ......................................................................ucaccggguguacaucagcuaG................... 1 +seq_376134_x7 ......................................................................ucaccggguguacaAcagcuaa................... 1 +seq_368118_x72 ......................................................................ucaccggguguacaucagUuaa................... 1 +seq_348903_x271 ......................................................................ucaccgggugCacaucagcuaa................... 1 +seq_377617_x2 ......................................................................ucacGggguguacaucagcuaa................... 1 +seq_364804_x110 ......................................................................ucaccggguguacauAagcuaa................... 1 +seq_366707_x90 ......................................................................ucaccggguguacauUagcuaa................... 1 +seq_373899_x19 ......................................................................ucaccgUguguacaucagcuaa................... 1 +seq_370175_x47 ......................................................................ucaccggguguacaucNgcuaa................... 1 +seq_372711_x26 ......................................................................ucaccggguguacaGcagcuaa................... 1 +seq_369549_x59 ......................................................................ucaccggguguacUucagcuaa................... 1 +seq_343569_x355 ......................................................................ucaccggguguacaucagcuaaU.................. 1 +seq_372440_x28 ......................................................................ucaccggguguacaucagcuaaC.................. 1 +seq_374029_x18 ......................................................................ucaccggguguacaucagcuaag.................. 0 +seq_378259_x1 ......................................................................ucaccgggAguacaucagcuaag.................. 1 +seq_339613_x541 ......................................................................ucaccggguguacaucagcuaaA.................. 1 +seq_377595_x2 ......................................................................ucaccggguguacaucagcuaagU................. 1 +seq_377749_x1 ......................................................................ucaccggguguacaucagcuaagC................. 1 +seq_378291_x1 ......................................................................ucaccggguguacaucagcuaagg................. 0 +seq_378129_x1 ......................................................................ucaccggguguacaucagcuaaAg................. 1 +seq_378039_x1 ......................................................................ucaccggguguacaucagcuaaggC................ 1 +seq_376232_x7 .......................................................................caccggguguacaucagcua.................... 0 +seq_377964_x1 .......................................................................caccggguguacNucagcuaa................... 1 +seq_377241_x3 .......................................................................caccggguguaGaucagcuaa................... 1 +seq_377764_x1 .......................................................................Uaccggguguacaucagcuaa................... 1 +seq_377933_x1 .......................................................................caccUgguguacaucagcuaa................... 1 +seq_377635_x2 .......................................................................caccgggugAacaucagcuaa................... 1 +seq_368044_x74 .......................................................................caccggguguacaucagcuaa................... 0 +seq_377455_x2 .......................................................................caccgggGguacaucagcuaa................... 1 +seq_378316_x1 .......................................................................caccggguguacaucaCcuaa................... 1 +seq_377467_x2 .......................................................................caccggguguacaucagcuaag.................. 0 +seq_374065_x18 .......................................................................caccggguguacaucagcuaaU.................. 1 +seq_377535_x2 .......................................................................caccggguguacaucagcuaaC.................. 1 +seq_373747_x19 .......................................................................caccggguguacaucagcuaaA.................. 1 +seq_377585_x2 ........................................................................accggguguacaucagcu..................... 0 +seq_376955_x4 ........................................................................accggguguacaucagcua.................... 0 +seq_378020_x1 ........................................................................accgggugCacaucagcuaa................... 1 +seq_378224_x1 ........................................................................acAggguguacaucagcuaa................... 1 +seq_377860_x1 ........................................................................accggguguaUaucagcuaa................... 1 +seq_377220_x3 ........................................................................accggguguacaucagGuaa................... 1 +seq_377745_x1 ........................................................................Uccggguguacaucagcuaa................... 1 +seq_377887_x1 ........................................................................accgUguguacaucagcuaa................... 1 +seq_378139_x1 ........................................................................accggguguacaucagcCaa................... 1 +seq_378244_x1 ........................................................................accgCguguacaucagcuaa................... 1 +seq_377939_x1 ........................................................................accggguAuacaucagcuaa................... 1 +seq_377569_x2 ........................................................................accggguguacaucUgcuaa................... 1 +seq_375275_x11 ........................................................................accgggCguacaucagcuaa................... 1 +seq_378306_x1 ........................................................................acGggguguacaucagcuaa................... 1 +seq_377280_x3 ........................................................................accggguguacauAagcuaa................... 1 +seq_351776_x240 ........................................................................accggguguacaucagcuaa................... 0 +seq_378004_x1 ........................................................................accggguguacaucaUcuaa................... 1 +seq_378267_x1 ........................................................................accggguguacaucagcuaC................... 1 +seq_377157_x3 ........................................................................accggguguacaucagAuaa................... 1 +seq_376633_x5 ........................................................................accggguguacaucCgcuaa................... 1 +seq_376767_x4 ........................................................................accCgguguacaucagcuaa................... 1 +seq_378206_x1 ........................................................................accggguguacaGcagcuaa................... 1 +seq_377499_x2 ........................................................................accggguguacaucaCcuaa................... 1 +seq_377607_x2 ........................................................................accggguguacaucagcuCa................... 1 +seq_377469_x2 ........................................................................aGcggguguacaucagcuaa................... 1 +seq_377623_x2 ........................................................................accggguguacaucagcuaU................... 1 +seq_376503_x6 ........................................................................accgggugGacaucagcuaa................... 1 +seq_377579_x2 ........................................................................accgggAguacaucagcuaa................... 1 +seq_377347_x2 ........................................................................aAcggguguacaucagcuaa................... 1 +seq_377905_x1 ........................................................................Nccggguguacaucagcuaa................... 1 +seq_376618_x5 ........................................................................accgggGguacaucagcuaa................... 1 +seq_377367_x2 ........................................................................accggguguacCucagcuaa................... 1 +seq_377310_x3 ........................................................................accggguguacaNcagcuaa................... 1 +seq_376759_x4 ........................................................................accggguguacaucagcuaaA.................. 1 +seq_377869_x1 ........................................................................accggguguacaucagcuaaU.................. 1 +seq_378311_x1 .........................................................................ccggguguacaucagcua.................... 0 +seq_378258_x1 .........................................................................cAggguguacaucagcuaa................... 1 +seq_377659_x2 .........................................................................ccggguguacaucagcuaa................... 0 + + + +>chrII:11534525-11540624_9 +score total 7482.8 +score for star read(s) 3.9 +score for read counts 7472.1 +score for mfe 2.2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 14668 +mature read count 14617 +loop read count 0 +star read count 51 +exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +obs fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq ccacuugcuccaccgcugucggggaaccgcgccaauuuucgcuucagugcuagaccauccaaagugucuaucaccgggugaaaauucgcauggguccccgacgcggaaaga +pri_struct ............((((.((((((((.(((.((.(((((((((((..(((.((((((.......).))))).))).))))))))))).)).))).))))))))))))..... #MM +seq_377936_x1 .............................cgccaauuuucgcuucagCgc............................................................. 1 +seq_377645_x2 .............................cgccaauuuucgcuucagugcu............................................................ 0 +seq_377966_x1 .............................cgccaauuuucgcuucaguUcu............................................................ 1 +seq_378302_x1 .............................cgAcaauuuucgcuucagugcua........................................................... 1 +seq_371297_x37 .............................cgccaauuuucgcuucagugcua........................................................... 0 +seq_378170_x1 .............................cgccaauuuucgcuucagCgcua........................................................... 1 +seq_378042_x1 .............................cgccaauuuucgcuucagGgcua........................................................... 1 +seq_377163_x3 .............................cgccaauuuucgcuucaUugcua........................................................... 1 +seq_377387_x2 .............................cgccaauuuucgcuucagugcuaU.......................................................... 1 +seq_378257_x1 ..............................gccaauuuucgcuucaAugcua........................................................... 1 +seq_378254_x1 ..............................gccaCuuuucgcuucagugcua........................................................... 1 +seq_378197_x1 ...................................................................cuaucaccgggCgaaaauucgca..................... 1 +seq_373804_x19 ....................................................................Aaucaccgggugaaaauucgcaug................... 1 +seq_378229_x1 ....................................................................uCucaccgggugaaaauucgcaug................... 1 +seq_378144_x1 .....................................................................aucaAcgggugaaaauucgcaug................... 1 +seq_375076_x12 .....................................................................aucaccgggugaaaauucgcaug................... 0 +seq_375525_x10 .....................................................................Cucaccgggugaaaauucgcaug................... 1 +seq_378009_x1 .....................................................................Uucaccgggugaaaauucgcaug................... 1 +seq_377761_x1 ......................................................................ucaccgggugaaaauucgc...................... 0 +seq_377369_x2 ......................................................................ucacAgggugaaaauucgca..................... 1 +seq_377937_x1 ......................................................................ucaccgggugaaaauuAgca..................... 1 +seq_372815_x25 ......................................................................ucaccgggugaaaauucgca..................... 0 +seq_378192_x1 ......................................................................ucaccgggCgaaaauucgca..................... 1 +seq_378019_x1 ......................................................................ucaccgggugUaaauucgca..................... 1 +seq_377785_x1 ......................................................................ucaccgggugaUaauucgca..................... 1 +seq_377409_x2 ......................................................................ucaccgggGgaaaauucgca..................... 1 +seq_377790_x1 ......................................................................ucaccgggugaaaauucgUa..................... 1 +seq_378098_x1 ......................................................................ucaccgggugaaaauucUcau.................... 1 +seq_377907_x1 ......................................................................ucaccgggugaaaauucgcCu.................... 1 +seq_352482_x229 ......................................................................ucaccgggugaaaauucgcau.................... 0 +seq_377756_x1 ......................................................................ucaccgUgugaaaauucgcau.................... 1 +seq_376515_x6 ......................................................................ucacAgggugaaaauucgcau.................... 1 +seq_377952_x1 ......................................................................ucaccgggugUaaauucgcau.................... 1 +seq_377985_x1 ......................................................................ucacUgggugaaaauucgcau.................... 1 +seq_377691_x2 ......................................................................ucaccggguUaaaauucgcau.................... 1 +seq_377934_x1 ......................................................................ucaccgggugaaaauucAcau.................... 1 +seq_377124_x3 ......................................................................ucaccgggGgaaaauucgcau.................... 1 +seq_378069_x1 ......................................................................uGaccgggugaaaauucgcau.................... 1 +seq_378028_x1 ......................................................................ucaccgCgugaaaauucgcau.................... 1 +seq_376323_x6 ......................................................................ucaccgggugaaaauuAgcau.................... 1 +seq_378269_x1 ......................................................................ucaccgggugaaGauucgcau.................... 1 +seq_377993_x1 ......................................................................ucaccgggugaaaauucgcaG.................... 1 +seq_378033_x1 ......................................................................ucaAcgggugaaaauucgcau.................... 1 +seq_378271_x1 ......................................................................uAaccgggugaaaauucgcau.................... 1 +seq_377121_x3 ......................................................................ucaccgggugaaNauucgcau.................... 1 +seq_377497_x2 ......................................................................ucaccgggugaaaauuGgcau.................... 1 +seq_373728_x19 ......................................................................ucaccgggugaCaauucgcaug................... 1 +seq_360225_x157 ......................................................................ucaccgggCgaaaauucgcaug................... 1 +seq_373268_x22 ......................................................................ucaccgggugaaaauucgcauC................... 1 +seq_377271_x3 ......................................................................ucaccgggugaaaauucgGaug................... 1 +seq_374343_x16 ......................................................................Gcaccgggugaaaauucgcaug................... 1 +seq_373506_x21 ......................................................................ucaccAggugaaaauucgcaug................... 1 +seq_372204_x30 ......................................................................ucaccgggugaaCauucgcaug................... 1 +seq_347181_x298 ......................................................................ucacAgggugaaaauucgcaug................... 1 +seq_361731_x143 ......................................................................ucaccgggAgaaaauucgcaug................... 1 +seq_375874_x9 ......................................................................ucaccgggugaaaauucgcaCg................... 1 +seq_378088_x1 ......................................................................ucaccgggugaaaauucNcaug................... 1 +seq_373588_x20 ......................................................................ucaccgggugaaaauucgcUug................... 1 +seq_377851_x1 ......................................................................Ncaccgggugaaaauucgcaug................... 1 +seq_373548_x20 ......................................................................ucaccggCugaaaauucgcaug................... 1 +seq_370128_x47 ......................................................................ucaccgggugCaaauucgcaug................... 1 +seq_374119_x18 ......................................................................ucaccgggugaaaauucgUaug................... 1 +seq_373060_x24 ......................................................................ucaccgAgugaaaauucgcaug................... 1 +seq_373443_x21 ......................................................................ucaGcgggugaaaauucgcaug................... 1 +seq_374627_x15 ......................................................................ucaccggguAaaaauucgcaug................... 1 +seq_374973_x13 ......................................................................ucaccgggugaUaauucgcaug................... 1 +seq_373400_x22 ......................................................................ucaccgggugaaaauucgcCug................... 1 +seq_372577_x27 ......................................................................ucaccgggugaaaauucAcaug................... 1 +seq_375505_x10 ......................................................................uNaccgggugaaaauucgcaug................... 1 +seq_368739_x66 ......................................................................ucaccgggugaaaauucUcaug................... 1 +seq_376703_x5 ......................................................................ucaccgggugaaUauucgcaug................... 1 +seq_345948_x316 ......................................................................ucaccgggugaaaauucgcauU................... 1 +seq_373290_x22 ......................................................................ucaccgggugaaaauuNgcaug................... 1 +seq_376062_x8 ......................................................................ucacGgggugaaaauucgcaug................... 1 +seq_376353_x6 ......................................................................ucGccgggugaaaauucgcaug................... 1 +seq_371653_x34 ......................................................................ucaccgggugaaaauucgcauA................... 1 +seq_375748_x9 ......................................................................Ccaccgggugaaaauucgcaug................... 1 +seq_373628_x20 ......................................................................ucaccUggugaaaauucgcaug................... 1 +seq_377581_x2 ......................................................................ucaccgggugaaaGuucgcaug................... 1 +seq_351036_x251 ......................................................................ucaccgggGgaaaauucgcaug................... 1 +seq_376110_x8 ......................................................................ucaccgggugaaaauGcgcaug................... 1 +seq_376218_x7 ......................................................................Acaccgggugaaaauucgcaug................... 1 +seq_377357_x2 ......................................................................ucaNcgggugaaaauucgcaug................... 1 +seq_375136_x12 ......................................................................ucaccgggugaaaauCcgcaug................... 1 +seq_366148_x95 ......................................................................ucaccgggugaaaauuAgcaug................... 1 +seq_374895_x13 ......................................................................ucaccgggugaaaauucCcaug................... 1 +seq_374701_x14 ......................................................................ucaccgggugaaaauuGgcaug................... 1 +seq_375475_x10 ......................................................................ucCccgggugaaaauucgcaug................... 1 +seq_371985_x32 ......................................................................ucaccgggugGaaauucgcaug................... 1 +seq_372353_x29 ......................................................................uUaccgggugaaaauucgcaug................... 1 +seq_368673_x66 ......................................................................ucaccgCgugaaaauucgcaug................... 1 +seq_372382_x29 ......................................................................ucacUgggugaaaauucgcaug................... 1 +seq_373785_x19 ......................................................................ucaccggAugaaaauucgcaug................... 1 +seq_266019_x11571......................................................................ucaccgggugaaaauucgcaug................... 0 +seq_372234_x30 ......................................................................ucaccgggugaaaauuUgcaug................... 1 +seq_373842_x19 ......................................................................ucaccgggugaaaauucgAaug................... 1 +seq_375655_x10 ......................................................................ucaccgggugaaaCuucgcaug................... 1 +seq_375998_x8 ......................................................................ucaccgggugaaaauucgcGug................... 1 +seq_376281_x6 ......................................................................ucaccgggugaaaauucgcaAg................... 1 +seq_375208_x12 ......................................................................ucaccggguCaaaauucgcaug................... 1 +seq_376141_x7 ......................................................................ucaccgggugaaaauAcgcaug................... 1 +seq_375645_x10 ......................................................................ucaccCggugaaaauucgcaug................... 1 +seq_372865_x25 ......................................................................ucaccgggugUaaauucgcaug................... 1 +seq_367656_x78 ......................................................................ucaccgggugaaNauucgcaug................... 1 +seq_375064_x12 ......................................................................ucaccgggugaGaauucgcaug................... 1 +seq_375605_x10 ......................................................................ucaccgggugaaaaGucgcaug................... 1 +seq_374391_x16 ......................................................................ucaUcgggugaaaauucgcaug................... 1 +seq_378049_x1 ......................................................................ucaccggNugaaaauucgcaug................... 1 +seq_375297_x11 ......................................................................ucaccgggugaaaaCucgcaug................... 1 +seq_375425_x10 ......................................................................ucaccgggugaaaaAucgcaug................... 1 +seq_372685_x26 ......................................................................uAaccgggugaaaauucgcaug................... 1 +seq_369431_x59 ......................................................................ucaAcgggugaaaauucgcaug................... 1 +seq_375051_x13 ......................................................................ucaccggguUaaaauucgcaug................... 1 +seq_375495_x10 ......................................................................ucaccggUugaaaauucgcaug................... 1 +seq_374551_x16 ......................................................................ucaccgggugaaGauucgcaug................... 1 +seq_374687_x14 ......................................................................uGaccgggugaaaauucgcaug................... 1 +seq_377349_x2 ......................................................................ucaccgggNgaaaauucgcaug................... 1 +seq_374799_x14 ......................................................................ucaccgggugaaaauucgNaug................... 1 +seq_371444_x36 ......................................................................ucaccgggugaaaauucgcaGg................... 1 +seq_375712_x9 ......................................................................ucaccgUgugaaaauucgcaug................... 1 +cel-miR-36 ......................................................................ucaccgggugaaaauucgcaug................... 0 +seq_374258_x17 ......................................................................ucaccgggugaaaUuucgcaug................... 1 +seq_378058_x1 ......................................................................ucaccgggugaaaauucgcaGgg.................. 1 +seq_375635_x10 ......................................................................ucaccgggugaaaauucgcaugA.................. 1 +seq_377329_x2 ......................................................................ucaccgggugaaaauucgcaugC.................. 1 +seq_371408_x36 ......................................................................ucaccgggugaaaauucgcaugU.................. 1 +seq_378065_x1 ......................................................................ucaccgggugaaaauucgcauggC................. 1 +seq_377890_x1 .......................................................................caccgggugaaaCuucgcaug................... 1 +seq_377471_x2 .......................................................................caccgggGgaaaauucgcaug................... 1 +seq_377827_x1 .......................................................................cacUgggugaaaauucgcaug................... 1 +seq_377073_x3 .......................................................................caccgggugaaaauucgcaug................... 0 +seq_378145_x1 ........................................................................accgggugaaaauucgca..................... 0 +seq_377103_x3 ........................................................................accgggugaaaauucgcau.................... 0 +seq_378119_x1 ........................................................................accgggugaaaauucgcaCg................... 1 +seq_378255_x1 ........................................................................accggAugaaaauucgcaug................... 1 +seq_377693_x2 ........................................................................accgggugaaaauucUcaug................... 1 +seq_377743_x2 ........................................................................accCggugaaaauucgcaug................... 1 +seq_378045_x1 ........................................................................accgggugaaaaAucgcaug................... 1 +seq_377351_x2 ........................................................................accggguCaaaauucgcaug................... 1 +seq_377791_x1 ........................................................................accgggugaaaauucgcauC................... 1 +seq_378159_x1 ........................................................................acUgggugaaaauucgcaug................... 1 +seq_365235_x104 ........................................................................accgggugaaaauucgcaug................... 0 +seq_377765_x1 ........................................................................accgggugaaaauucCcaug................... 1 +seq_377365_x2 ........................................................................accgggugaaaauuAgcaug................... 1 +seq_378121_x1 ........................................................................accgggCgaaaauucgcaug................... 1 +seq_377641_x2 ........................................................................accgggugaaaauGcgcaug................... 1 +seq_378264_x1 ........................................................................accgAgugaaaauucgcaug................... 1 +seq_378094_x1 ........................................................................accgggAgaaaauucgcaug................... 1 +seq_377669_x2 ........................................................................accgggugaaaauucgcauU................... 1 +seq_376819_x4 ........................................................................accgggGgaaaauucgcaug................... 1 +seq_377755_x1 ..........................................................................cgggugaaaauucgcaug................... 0 + + + +>chrII:11534525-11540624_15 +score total 1978.6 +score for star read(s) 3.9 +score for read counts 1968.1 +score for mfe 2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 3872 +mature read count 3014 +loop read count 1 +star read count 857 +exp ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +obs ffffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMffffffffffffffffff +pri_seq auuauugaauuccugauauaccgagagcccagcugauuucgucuugguaauaagcucgucauugagauuaucaccggguguaaaucagcuuggcucuggugucuccgaac +pri_struct .........(((..((.(((((.((((((.(((((((((((.((((((.((((.((((....)))).)))).)))))))).))))))))).))))))))))).)).))). #MM +seq_377766_x1 .............................cagcugauuucgucuugguaau........................................................... 0 +seq_377852_x1 .............................Aagcugauuucgucuugguaau........................................................... 1 +seq_376455_x6 .............................cagcugauuucgucuugguaaua.......................................................... 0 +seq_376102_x8 ..............................agcugauuucgucuuggua............................................................. 0 +seq_377932_x1 ..............................agcugCuuucgucuugguaa............................................................ 1 +seq_377781_x1 ..............................agcugauuucgucuugUuaa............................................................ 1 +seq_377876_x1 ..............................agcugUuuucgucuugguaa............................................................ 1 +seq_374292_x17 ..............................agcugauuucgucuugguaa............................................................ 0 +seq_377750_x1 ..............................agcugauuucgucuugguCa............................................................ 1 +seq_377792_x1 ..............................agAugauuucgucuugguaau........................................................... 1 +seq_377145_x3 ..............................Ugcugauuucgucuugguaau........................................................... 1 +seq_370030_x50 ..............................agcugauuucgucuugguaau........................................................... 0 +seq_378023_x1 ..............................agcugauuucgucuugguUau........................................................... 1 +seq_377863_x1 ..............................agcugauuAcgucuugguaau........................................................... 1 +seq_377940_x1 ..............................agcugauuucgucuugAuaau........................................................... 1 +seq_377894_x1 ..............................agcugauuucguAuugguaau........................................................... 1 +seq_377493_x2 ..............................aCcugauuucgucuugguaaua.......................................................... 1 +seq_377061_x3 ..............................agcugauuucgucuuggAaaua.......................................................... 1 +seq_377856_x1 ..............................agcugauuucgCcuugguaaua.......................................................... 1 +seq_378117_x1 ..............................agcugauuucgAcuugguaaua.......................................................... 1 +seq_376371_x6 ..............................agcugauuucgucuuUguaaua.......................................................... 1 +seq_377070_x3 ..............................agcugauuuAgucuugguaaua.......................................................... 1 +seq_375950_x8 ..............................agAugauuucgucuugguaaua.......................................................... 1 +seq_376148_x7 ..............................agcugUuuucgucuugguaaua.......................................................... 1 +seq_376533_x5 ..............................Ugcugauuucgucuugguaaua.......................................................... 1 +seq_377313_x3 ..............................agcugauuuUgucuugguaaua.......................................................... 1 +seq_378077_x1 ..............................agcugaCuucgucuugguaaua.......................................................... 1 +seq_378084_x1 ..............................aAcugauuucgucuugguaaua.......................................................... 1 +seq_377902_x1 ..............................agcugauuucguGuugguaaua.......................................................... 1 +seq_377151_x3 ..............................agcuAauuucgucuugguaaua.......................................................... 1 +seq_378275_x1 ..............................agcCgauuucgucuugguaaua.......................................................... 1 +seq_378290_x1 ..............................agcugauuucgucuugguaGua.......................................................... 1 +seq_377663_x2 ..............................agcugGuuucgucuugguaaua.......................................................... 1 +seq_377166_x3 ..............................agcugauuucgucuugguaUua.......................................................... 1 +seq_378017_x1 ..............................agcugCuuucgucuugguaaua.......................................................... 1 +seq_376979_x4 ..............................agUugauuucgucuugguaaua.......................................................... 1 +seq_376907_x4 ..............................agcugauuucgucuugguaauU.......................................................... 1 +seq_377363_x2 ..............................agcugaGuucgucuugguaaua.......................................................... 1 +seq_377031_x3 ..............................agcugauuucgucuugguaauC.......................................................... 1 +seq_377525_x2 ..............................agcugauuucguAuugguaaua.......................................................... 1 +seq_377085_x3 ..............................agcugauuucgGcuugguaaua.......................................................... 1 +seq_376739_x4 ..............................agcugauuucgucuuggCaaua.......................................................... 1 +seq_377274_x3 ..............................agcugauuucguUuugguaaua.......................................................... 1 +seq_377389_x2 ..............................agcugauuucgucuuCguaaua.......................................................... 1 +seq_376578_x5 ..............................agcugauuucgucuuggGaaua.......................................................... 1 +seq_377665_x2 ..............................agcugauuucgucuugguCaua.......................................................... 1 +seq_378137_x1 ..............................agcugauuucAucuugguaaua.......................................................... 1 +seq_337222_x632 ..............................agcugauuucgucuugguaaua.......................................................... 0 +seq_377205_x3 ..............................agcugauuucgucuugCuaaua.......................................................... 1 +seq_378202_x1 ..............................agcugauuucUucuugguaaua.......................................................... 1 +seq_375455_x10 ..............................agcugauuucgucuugUuaaua.......................................................... 1 +seq_373956_x19 ..............................agcugauuucgucuugguaauaU......................................................... 1 +seq_376317_x6 ..............................agcugauuucgucuugguaauaa......................................................... 0 +seq_377935_x1 ..............................agcugauuucguGuugguaauaa......................................................... 1 +seq_377919_x1 ..............................agcuAauuucgucuugguaauaa......................................................... 1 +seq_378228_x1 ..............................agcugauuucgucuugguaauaC......................................................... 1 +seq_378031_x1 ....................................................agcucgucauugagauua........................................ 0 +seq_377831_x1 ....................................................................uGucaccggguguaaaucagcu.................... 1 +seq_377319_x3 ....................................................................Aaucaccggguguaaaucagcuug.................. 1 +seq_377509_x2 .....................................................................Cucaccggguguaaaucagcuu................... 1 +seq_378082_x1 .....................................................................Cucaccggguguaaaucagcuug.................. 1 +seq_377100_x3 .....................................................................aucaccggguguaaaucagcuug.................. 0 +seq_376693_x5 ......................................................................ucaccggguguaaaucag...................... 0 +seq_377359_x2 ......................................................................ucaccgggGguaaaucagc..................... 1 +seq_375286_x11 ......................................................................ucaccggguguaaaucagc..................... 0 +seq_377929_x1 ......................................................................ucaccggguguaaauAagc..................... 1 +seq_378332_x1 ......................................................................ucaccggguguaaaucaUc..................... 1 +seq_378328_x1 ......................................................................ucaGcggguguaaaucagc..................... 1 +seq_377979_x1 ......................................................................ucaccggguguaNaucagc..................... 1 +seq_377361_x2 ......................................................................ucacAggguguaaaucagcu.................... 1 +seq_373312_x22 ......................................................................ucaccggguguaaaucagcu.................... 0 +seq_378183_x1 ......................................................................ucaccggguguaNaucagcu.................... 1 +seq_378120_x1 ......................................................................ucaccggguguaaaucagcG.................... 1 +seq_377981_x1 ......................................................................ucaccggguguaUaucagcu.................... 1 +seq_378256_x1 ......................................................................ucaccggguguaaaucaAcu.................... 1 +seq_377995_x1 ......................................................................Gcaccggguguaaaucagcuu................... 1 +seq_378260_x1 ......................................................................ucaccggguguaaauUagcuu................... 1 +seq_378301_x1 ......................................................................ucaccgggCguaaaucagcuu................... 1 +seq_378061_x1 ......................................................................uGaccggguguaaaucagcuu................... 1 +seq_377812_x1 ......................................................................ucaccggguguaaaAcagcuu................... 1 +seq_377776_x1 ......................................................................ucaccgCguguaaaucagcuu................... 1 +seq_377244_x3 ......................................................................ucaccggguguaaaucagcuA................... 1 +seq_366974_x88 ......................................................................ucaccggguguaaaucagcuu................... 0 +seq_377841_x1 ......................................................................ucaccgggugCaaaucagcuu................... 1 +seq_378297_x1 ......................................................................ucaccgggAguaaaucagcuu................... 1 +seq_377914_x1 ......................................................................ucaccggguguaaaucagcCu................... 1 +seq_376558_x5 ......................................................................ucaccggguguaCaucagcuu................... 1 +seq_377989_x1 ......................................................................ucaccggguguaaaCcagcuu................... 1 +seq_376743_x4 ......................................................................ucacAggguguaaaucagcuu................... 1 +seq_377778_x1 ......................................................................ucaccggguguaaaucGgcuu................... 1 +seq_377753_x1 ......................................................................ucaccggguguaaaucaUcuu................... 1 +seq_376648_x5 ......................................................................ucaccggguguaaaucGgcuug.................. 1 +seq_377707_x2 ......................................................................ucaccggguguaGaucagcuug.................. 1 +seq_377978_x1 ......................................................................ucaccCgguguaaaucagcuug.................. 1 +cel-miR-39 ......................................................................ucaccggguguaaaucagcuug.................. 0 +seq_378262_x1 ......................................................................ucaccggguguaUaucagcuug.................. 1 +seq_376628_x5 ......................................................................ucaccggguguaaaucagAuug.................. 1 +seq_377259_x3 ......................................................................ucaccggguguaaaucUgcuug.................. 1 +seq_377503_x2 ......................................................................ucaccggguAuaaaucagcuug.................. 1 +seq_374309_x17 ......................................................................ucaccgggCguaaaucagcuug.................. 1 +seq_377495_x2 ......................................................................ucaccggguguCaaucagcuug.................. 1 +seq_376118_x8 ......................................................................ucaccggguguaaaucaCcuug.................. 1 +seq_374326_x17 ......................................................................ucaccggguguaaauUagcuug.................. 1 +seq_376771_x4 ......................................................................ucaUcggguguaaaucagcuug.................. 1 +seq_376509_x6 ......................................................................ucaccggUuguaaaucagcuug.................. 1 +seq_377631_x2 ......................................................................ucCccggguguaaaucagcuug.................. 1 +seq_374642_x15 ......................................................................ucaccggguguaaauAagcuug.................. 1 +seq_377433_x2 ......................................................................uGaccggguguaaaucagcuug.................. 1 +seq_373880_x19 ......................................................................ucaccgggAguaaaucagcuug.................. 1 +seq_375942_x8 ......................................................................ucaccgCguguaaaucagcuug.................. 1 +seq_374855_x14 ......................................................................ucaccgggugGaaaucagcuug.................. 1 +seq_377094_x3 ......................................................................uNaccggguguaaaucagcuug.................. 1 +seq_373766_x19 ......................................................................ucaccgggugCaaaucagcuug.................. 1 +seq_378234_x1 ......................................................................ucaccggguUuaaaucagcuug.................. 1 +seq_376437_x6 ......................................................................ucaccggguguaaaucagcuGg.................. 1 +seq_376995_x4 ......................................................................ucaccgAguguaaaucagcuug.................. 1 +seq_377591_x2 ......................................................................ucaccggguCuaaaucagcuug.................. 1 +seq_377217_x3 ......................................................................ucaccgggugAaaaucagcuug.................. 1 +seq_377395_x2 ......................................................................ucaccggguguGaaucagcuug.................. 1 +seq_377545_x2 ......................................................................ucaccggguguaaaucNgcuug.................. 1 +seq_376899_x4 ......................................................................ucaccggguguaaaCcagcuug.................. 1 +seq_378172_x1 ......................................................................ucaccggNuguaaaucagcuug.................. 1 +seq_354255_x214 ......................................................................ucaccggguguaaaucagcuuU.................. 1 +seq_377808_x1 ......................................................................ucaccggguguaaaucagGuug.................. 1 +seq_376311_x6 ......................................................................ucaccggguguaCaucagcuug.................. 1 +seq_377741_x2 ......................................................................ucaccggguguaaaucagUuug.................. 1 +seq_375445_x10 ......................................................................ucaccggguguaNaucagcuug.................. 1 +seq_378186_x1 ......................................................................ucaNcggguguaaaucagcuug.................. 1 +seq_377920_x1 ......................................................................ucaccggguguaaaucagcuAg.................. 1 +seq_375918_x8 ......................................................................uUaccggguguaaaucagcuug.................. 1 +seq_375555_x10 ......................................................................ucaccggguguaaaucaUcuug.................. 1 +seq_377345_x2 ......................................................................ucaccggguguaaCucagcuug.................. 1 +seq_376548_x5 ......................................................................ucaccggguguaaaGcagcuug.................. 1 +seq_374597_x15 ......................................................................ucaccggguguaaaucagcuuC.................. 1 +seq_376891_x4 ......................................................................ucaccggguguaaaucagcGug.................. 1 +seq_311369_x2128......................................................................ucaccggguguaaaucagcuug.................. 0 +seq_378047_x1 ......................................................................ucaccggguguaaauGagcuug.................. 1 +seq_375757_x9 ......................................................................ucaccggguguaaaucCgcuug.................. 1 +seq_376377_x6 ......................................................................ucaccUgguguaaaucagcuug.................. 1 +seq_376779_x4 ......................................................................ucaccAgguguaaaucagcuug.................. 1 +seq_377199_x3 ......................................................................ucaccgUguguaaaucagcuug.................. 1 +seq_376022_x8 ......................................................................ucaAcggguguaaaucagcuug.................. 1 +seq_372142_x31 ......................................................................ucacAggguguaaaucagcuug.................. 1 +seq_378127_x1 ......................................................................ucaccggguguaaaucagcCug.................. 1 +seq_377375_x2 ......................................................................ucaccggguguaaaucaAcuug.................. 1 +seq_377727_x2 ......................................................................ucaccggCuguaaaucagcuug.................. 1 +seq_378248_x1 ......................................................................uAaccggguguaaaucagcuug.................. 1 +seq_377573_x2 ......................................................................ucaGcggguguaaaucagcuug.................. 1 +seq_378181_x1 ......................................................................Acaccggguguaaaucagcuug.................. 1 +seq_376815_x4 ......................................................................ucaccggguguaaUucagcuug.................. 1 +seq_377238_x3 ......................................................................ucacUggguguaaaucagcuug.................. 1 +seq_375847_x9 ......................................................................Gcaccggguguaaaucagcuug.................. 1 +seq_377483_x2 ......................................................................ucaccggguguaaGucagcuug.................. 1 +seq_377697_x2 ......................................................................ucaccggAuguaaaucagcuug.................. 1 +seq_377880_x1 ......................................................................ucaccggguguUaaucagcuug.................. 1 +seq_372658_x27 ......................................................................ucaccgggGguaaaucagcuug.................. 1 +seq_371821_x33 ......................................................................ucaccggguguaaaucagcuuA.................. 1 +seq_377399_x2 ......................................................................ucaccggguguaaaucagcAug.................. 1 +seq_376991_x4 ......................................................................ucaccggguguaaaucagcuugC................. 1 +seq_376683_x5 ......................................................................ucaccggguguaaaucagcuugg................. 0 +seq_375196_x12 ......................................................................ucaccggguguaaaucagcuugA................. 1 +seq_372080_x31 ......................................................................ucaccggguguaaaucagcuugU................. 1 +seq_377849_x1 ......................................................................ucaccggguguaaaucagcuuggc................ 0 +seq_377884_x1 ......................................................................ucaccggguguaaaucagcuuggcG............... 1 +seq_377597_x2 .......................................................................caccggguguaaaucagcuug.................. 0 +seq_377825_x1 .......................................................................caccggguguaaaucagcuuU.................. 1 +seq_377621_x2 ........................................................................accggguguaaaucagcuuU.................. 1 +seq_378024_x1 ........................................................................aAcggguguaaaucagcuug.................. 1 +seq_377846_x1 ........................................................................accgggGguaaaucagcuug.................. 1 +seq_378292_x1 ........................................................................accgggCguaaaucagcuug.................. 1 +seq_377705_x2 ........................................................................accggguguaaaucagcuuA.................. 1 +seq_377873_x1 ........................................................................accggguguaaaucUgcuug.................. 1 +seq_371887_x33 ........................................................................accggguguaaaucagcuug.................. 0 +seq_378179_x1 ........................................................................accggguguaaaucagcuNg.................. 1 +seq_378219_x1 ........................................................................accggguguaaaucagcuugUc................ 1 +seq_377870_x1 .........................................................................ccggguguaaaucagcuuA.................. 1 + + + +>chrII:11534525-11540624_13 +score total 5.5 +score for star read(s) -1.3 +score for read counts 0 +score for mfe 2.2 +score for randfold 1.6 +score for cons. seed 3 +miRNA with same seed cbr-miR-35 +total read count 2140 +mature read count 2132 +loop read count 8 +star read count 0 +exp fffffffffffffffffffffffffffffSSSSSSSSSSSSSSSSSSSSSSlllllllllllllllllllMMMMMMMMMMMMMMMMMMMMMMfffffffffffffffffff +pri_seq ucgugguuucucugugagccagguccuguuccgguuuuuuccguggugauaacgcauccaaaagucucuaucaccgggagaaaaacuggaguaggaccugugacucauucc +pri_struct .............((((((((((((((((((((((((((..(.((((((((..((........))...)))))))).)..)))))))))))))))))))).).)))))... #MM +seq_378012_x1 .........cucugugaUccagguccugu.................................................................................. 1 +seq_376030_x8 ...................................................acgcauccaaaagucucua......................................... 0 +seq_377775_x1 .....................................................................aucaccgggagaaaaacuggag.................... 0 +seq_378130_x1 .....................................................................aucaccgggagUaaaacuggagu................... 1 +seq_375088_x12 .....................................................................aucaccgggagaaaaacuggagu................... 0 +seq_378001_x1 .....................................................................aucaccggCagaaaaacuggagu................... 1 +seq_376947_x4 .....................................................................Cucaccgggagaaaaacuggagu................... 1 +seq_378196_x1 .....................................................................aucaccgggagaaCaacuggagu................... 1 +seq_377529_x2 .....................................................................aucaccgggagaaaaacuggaguU.................. 1 +seq_377895_x1 .....................................................................aucaccgggagaaaaacuggaguaA................. 1 +seq_377879_x1 ......................................................................ucaccgggUgaaaaacug....................... 1 +seq_377877_x1 ......................................................................ucaccgggagaaaaacug....................... 0 +seq_376747_x4 ......................................................................ucaccgggagaaaaacugga..................... 0 +seq_377819_x1 ......................................................................ucaccgggagaaaaacuggaU.................... 1 +seq_377523_x2 ......................................................................ucaccggCagaaaaacuggag.................... 1 +seq_377211_x3 ......................................................................ucaccgggagGaaaacuggag.................... 1 +seq_378171_x1 ......................................................................ucaccgggagaaUaacuggag.................... 1 +seq_377815_x1 ......................................................................ucaccgggagaaaUacuggag.................... 1 +seq_377425_x2 ......................................................................ucacAgggagaaaaacuggag.................... 1 +seq_378277_x1 ......................................................................ucaccgggagaaaaaUuggag.................... 1 +seq_378014_x1 ......................................................................ucaccgggagaaaaaGuggag.................... 1 +seq_376859_x4 ......................................................................ucaccgggagaaaaacuggUg.................... 1 +seq_377517_x2 ......................................................................ucaccgggagCaaaacuggag.................... 1 +seq_378305_x1 ......................................................................ucaAcgggagaaaaacuggag.................... 1 +seq_377924_x1 ......................................................................ucaccgggagUaaaacuggag.................... 1 +seq_377603_x2 ......................................................................ucaccgggagaaaaacuggaC.................... 1 +seq_378208_x1 ......................................................................ucaccgggagaaaaacAggag.................... 1 +seq_377178_x3 ......................................................................ucaccgggagaaaaacugCag.................... 1 +seq_377886_x1 ......................................................................ucaccgggagaaCaacuggag.................... 1 +seq_361587_x144 ......................................................................ucaccgggagaaaaacuggag.................... 0 +seq_377571_x2 ......................................................................ucaccgggUgaaaaacuggag.................... 1 +seq_376054_x8 ......................................................................ucaccgggagGaaaacuggagu................... 1 +seq_377868_x1 ......................................................................ucaAcgggagaaaaacuggagu................... 1 +seq_377229_x3 ......................................................................ucaccggAagaaaaacuggagu................... 1 +seq_377551_x2 ......................................................................ucaccgggagaaNaacuggagu................... 1 +seq_377429_x2 ......................................................................ucaccggCagaaaaacuggagu................... 1 +seq_376678_x5 ......................................................................ucaccgggagaaaaacuCgagu................... 1 +seq_377798_x1 ......................................................................ucaccgggagaaaaaNuggagu................... 1 +seq_374083_x18 ......................................................................ucaccgggagaaaaacuggUgu................... 1 +seq_375485_x10 ......................................................................ucaccgggagCaaaacuggagu................... 1 +seq_377874_x1 ......................................................................ucaccgggaAaaaaacuggagu................... 1 +seq_376673_x5 ......................................................................uAaccgggagaaaaacuggagu................... 1 +seq_377465_x2 ......................................................................ucaccgggagaaaaacAggagu................... 1 +seq_376863_x4 ......................................................................ucaccgggagaaaaacugUagu................... 1 +seq_377214_x3 ......................................................................uNaccgggagaaaaacuggagu................... 1 +seq_377391_x2 ......................................................................ucaccgggagaaaaacuggCgu................... 1 +seq_320610_x1349......................................................................ucaccgggagaaaaacuggagu................... 0 +seq_378162_x1 ......................................................................ucaccgggGgaaaaacuggagu................... 1 +seq_377945_x1 ......................................................................ucaccgggagaCaaacuggagu................... 1 +seq_378308_x1 ......................................................................ucaUcgggagaaaaacuggagu................... 1 +seq_377725_x2 ......................................................................Ccaccgggagaaaaacuggagu................... 1 +seq_378032_x1 ......................................................................ucaccgggagaaaUacuggagu................... 1 +seq_376211_x7 ......................................................................ucaccgggUgaaaaacuggagu................... 1 +seq_377906_x1 ......................................................................ucaccgggagaaaaacuggaUu................... 1 +seq_378174_x1 ......................................................................ucaccgggagaaaaacuggGgu................... 1 +seq_377339_x2 ......................................................................ucaccgggCgaaaaacuggagu................... 1 +seq_374190_x17 ......................................................................ucaccgggagaaaaacuggagA................... 1 +seq_376999_x4 ......................................................................ucaGcgggagaaaaacuggagu................... 1 +seq_371854_x33 ......................................................................ucaccgggagaaaaacuggagC................... 1 +seq_377739_x2 ......................................................................ucaccgggagaGaaacuggagu................... 1 +seq_376963_x4 ......................................................................ucaccUggagaaaaacuggagu................... 1 +seq_377960_x1 ......................................................................ucaccgggagaaaCacuggagu................... 1 +seq_376718_x5 ......................................................................ucaccgggagaaaaacuggaCu................... 1 +seq_378215_x1 ......................................................................ucaccgggagaaaaacugNagu................... 1 +seq_377196_x3 ......................................................................ucacUgggagaaaaacuggagu................... 1 +seq_378253_x1 ......................................................................ucaccgggagaaaaaGuggagu................... 1 +seq_377481_x2 ......................................................................ucaccgggagaaaaCcuggagu................... 1 +seq_377655_x2 ......................................................................ucaccgggagaaaaacNggagu................... 1 +seq_377842_x1 ......................................................................ucaccgggagaaGaacuggagu................... 1 +seq_377733_x2 ......................................................................ucaccgggagaaCaacuggagu................... 1 +seq_376975_x4 ......................................................................ucaccgggagaaaaacuAgagu................... 1 +seq_375739_x9 ......................................................................ucaccgggagaaaaaAuggagu................... 1 +seq_378059_x1 ......................................................................ucaccgggagaUaaacuggagu................... 1 +seq_376875_x4 ......................................................................ucaccgggagaaaaacuUgagu................... 1 +seq_377567_x2 ......................................................................ucCccgggagaaaaacuggagu................... 1 +seq_377208_x3 ......................................................................ucaccgggagaaaaacugAagu................... 1 +seq_378085_x1 ......................................................................ucaccCggagaaaaacuggagu................... 1 +seq_377379_x2 ......................................................................ucaccgggagaaaGacuggagu................... 1 +seq_378242_x1 ......................................................................ucaccgggaUaaaaacuggagu................... 1 +seq_378086_x1 ......................................................................ucaccAggagaaaaacuggagu................... 1 +seq_378041_x1 ......................................................................ucaccgggagaaaaUcuggagu................... 1 +seq_377901_x1 ......................................................................uGaccgggagaaaaacuggagu................... 1 +seq_377719_x2 ......................................................................Gcaccgggagaaaaacuggagu................... 1 +seq_378268_x1 ......................................................................ucaccgggaCaaaaacuggagu................... 1 +seq_377453_x2 ......................................................................ucaccgAgagaaaaacuggagu................... 1 +seq_373334_x22 ......................................................................ucaccgggagaaaaacugCagu................... 1 +seq_375160_x12 ......................................................................ucaccgggagaaaaaUuggagu................... 1 +seq_373422_x21 ......................................................................ucacAgggagaaaaacuggagu................... 1 +seq_375112_x12 ......................................................................ucaccgggagaaaaacuggagG................... 1 +cel-miR-38 ......................................................................ucaccgggagaaaaacuggagu................... 0 +seq_376038_x8 ......................................................................ucaccgggagUaaaacuggagu................... 1 +seq_377701_x2 ......................................................................uUaccgggagaaaaacuggagu................... 1 +seq_376293_x6 ......................................................................ucaccgggagaaaaacGggagu................... 1 +seq_377106_x3 ......................................................................ucaccgCgagaaaaacuggagu................... 1 +seq_377695_x2 ......................................................................ucaccgggagaaaaacuggUgua.................. 1 +seq_377892_x1 ......................................................................ucaccgggagCaaaacuggagua.................. 1 +seq_378063_x1 ......................................................................ucaccgggagaaaaacuggagAa.................. 1 +seq_377013_x3 ......................................................................ucaccgggagaaaaacuggagCa.................. 1 +seq_378122_x1 ......................................................................uGaccgggagaaaaacuggagua.................. 1 +seq_378075_x1 ......................................................................ucaccgggagaaaaacuggaguG.................. 1 +seq_352252_x230 ......................................................................ucaccgggagaaaaacuggaguU.................. 1 +seq_373708_x20 ......................................................................ucaccgggagaaaaacuggagua.................. 0 +seq_374947_x13 ......................................................................ucaccgggagaaaaacuggaguaA................. 1 +seq_378157_x1 ......................................................................ucaccgggagaaaaacuggaguUg................. 1 +seq_377403_x2 .......................................................................caccgggagaaaaacuggagu................... 0 +seq_377136_x3 ........................................................................accgggagaaaaacuggag.................... 0 +seq_378022_x1 ........................................................................accgggagaaaaacuggagC................... 1 +seq_375395_x10 ........................................................................accgggagaaaaacuggagu................... 0 +seq_378209_x1 ........................................................................accgggagaaaaacuggagA................... 1 +seq_378318_x1 ........................................................................accgggagaaaaacugAagu................... 1 +seq_378282_x1 ........................................................................accgggagGaaaacuggagu................... 1 +seq_377867_x1 ........................................................................accgggagCaaaacuggagu................... 1 +seq_377972_x1 ........................................................................accgggagaaaaacGggagu................... 1 +seq_377673_x2 ........................................................................accgggagaaaaacuggaguU.................. 1 +seq_377872_x1 ..........................................................................cgggagaaaaacuggagu................... 0 +seq_378055_x1 ..........................................................................cgggagaaaaacuggaguU.................. 1 + + + +>chrII:11534525-11540624_19 +score total 84.4 +score for star read(s) 3.9 +score for read counts 77.6 +score for mfe 1.9 +score for randfold 1.6 +score for cons. seed -0.6 +total read count 164 +mature read count 68 +loop read count 9 +star read count 87 +exp ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff +obs ffffffffffffffffffffffffffMMMMMMMMMMMMMMMMMMMMMMMlllllllllllllllllllllSSSSSSSSSSSSSSSSSSSSSSffffffffffffffffffff +pri_seq auuuuuaagugggucccagagaccuuggugguuuuucucugcagugauagauacuucuaacaacucgcuaucaccgggugaaaaaucaccuaggucuggagccuccugcucu +pri_struct .......((..((..(((..(((((.(((((((((((((((..(((((((.................))))))))))).))))))))))).))))))))..))..))..... #MM +seq_378151_x1 ..........................ggugguuuuucucuUcaguga................................................................. 1 +seq_377657_x2 ..........................ggugguuuuucucugcagugau................................................................ 0 +seq_378283_x1 ..........................ggGgguuuuucucugcagugaua............................................................... 1 +seq_377938_x1 ..........................ggugguuuuucucugUagugaua............................................................... 1 +seq_378266_x1 ..........................ggugguCuuucucugcagugaua............................................................... 1 +seq_376959_x4 ..........................ggugguuuuucucuUcagugaua............................................................... 1 +seq_377459_x2 ..........................ggugguuuuucucugcagugCua............................................................... 1 +seq_377463_x2 ..........................ggugguuuuuUucugcagugaua............................................................... 1 +seq_370580_x42 ..........................ggugguuuuucucugcagugaua............................................................... 0 +seq_378066_x1 ..........................ggugguuuuucucugcagCgaua............................................................... 1 +seq_378054_x1 ..........................ggugguuuuucucugcagugauU............................................................... 1 +seq_377637_x2 ..........................ggugguuuuucucugcCgugaua............................................................... 1 +seq_378131_x1 ..........................ggugguuuuucucugcagugauaU.............................................................. 1 +seq_378064_x1 ..........................ggugguuuuucucugcagugauag.............................................................. 0 +seq_378010_x1 ..........................ggugguuuuucuGugcagugauag.............................................................. 1 +seq_377371_x2 ..........................ggugguuuuucucugcagugauaAa............................................................. 1 +seq_377953_x1 ............................ugguuuuucucugcagugaua............................................................... 0 +seq_377801_x1 ............................ugguuuuucucugcagugUua............................................................... 1 +seq_377854_x1 ............................ugguuuuucucugcagugauaga............................................................. 0 +seq_375838_x9 .................................................gauacuucuaacaacucgcua.......................................... 0 +seq_377941_x1 ....................................................................uaucaccgggugaaaaaucaccu..................... 0 +seq_378320_x1 .....................................................................aucaccgggugaaaaaucacAu..................... 1 +seq_378280_x1 .....................................................................aucaccggguAaaaaaucaccu..................... 1 +seq_376006_x8 .....................................................................aucaccgggugaaaaaucaccu..................... 0 +seq_376879_x4 .....................................................................aucaccgggugaaaaaucaccuU.................... 1 +seq_375615_x10 .....................................................................aucaccgggugaaaaaucaccua.................... 0 +seq_378108_x1 .....................................................................aucaccgggGgaaaaaucaccua.................... 1 +seq_376851_x4 ......................................................................ucaccgggugaaaaaucaccu..................... 0 +seq_377803_x1 ......................................................................ucaccgggugaaCaaucaccua.................... 1 +seq_378243_x1 ......................................................................ucaccgggugaaaGaucaccua.................... 1 +seq_378091_x1 ......................................................................ucaccgAgugaaaaaucaccua.................... 1 +seq_377871_x1 ......................................................................ucaccgggugaaaaauAaccua.................... 1 +seq_377853_x1 ......................................................................uAaccgggugaaaaaucaccua.................... 1 +seq_378138_x1 ......................................................................ucaccgggugCaaaaucaccua.................... 1 +seq_378123_x1 ......................................................................uUaccgggugaaaaaucaccua.................... 1 +seq_377052_x3 ......................................................................ucaccgggGgaaaaaucaccua.................... 1 +cel-miR-41 ......................................................................ucaccgggugaaaaaucaccua.................... 0 +seq_378249_x1 ......................................................................ucaccgggugaaaaaucaUcua.................... 1 +seq_372631_x27 ......................................................................ucaccgggugaaaaaucaccua.................... 0 +seq_377820_x1 ......................................................................ucaccAggugaaaaaucaccua.................... 1 +seq_377247_x3 ......................................................................ucaccgggugaaaaaucaccuaU................... 1 +seq_377331_x2 ......................................................................ucaccgggugaaaaaucaccuaA................... 1 +seq_377731_x2 .......................................................................caccgggugaaaaaucaccua.................... 0 +seq_377439_x2 .......................................................................caccgggugaaaaaucaccuaU................... 1 +seq_377980_x1 ........................................................................accgggCgaaaaaucaccua.................... 1 +seq_376395_x6 ........................................................................accgggugaaaaaucaccua.................... 0 +seq_378083_x1 .........................................................................ccgggugaaaaaucaccua.................... 0 +seq_377991_x1 ..........................................................................cgggugaaaaaucaccua.................... 0 + + +