Mercurial > repos > rnateam > mirdeep2_quantifier
comparison tool_dependencies.xml @ 1:40dc77f3730c draft
Uploaded
author | rnateam |
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date | Wed, 04 Feb 2015 12:45:52 -0500 |
parents | 2c039fc73f1f |
children |
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0:2c039fc73f1f | 1:40dc77f3730c |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool_dependency> | 2 <tool_dependency> |
3 <package name="perl" version="5.18.1"> | 3 <package name="perl" version="5.18.1"> |
4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | 4 <repository changeset_revision="114b6af405fa" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
5 </package> | 5 </package> |
6 <package name="bowtie" version="0.12.7"> | 6 <package name="bowtie" version="0.12.7"> |
7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> | 7 <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> |
8 </package> | 8 </package> |
9 <package name="vienna_rna" version="1.8.5"> | 9 <package name="vienna_rna" version="1.8.5"> |
10 <repository changeset_revision="54e961ee33d4" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 10 <repository changeset_revision="6757330f89cd" name="package_vienna_rna_1_8" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
11 </package> | 11 </package> |
12 <package name="pdf_api2" version="2.023"> | 12 <package name="pdf_api2" version="2.023"> |
13 <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> | 13 <repository changeset_revision="b9b7fadfdb69" name="package_perl_pdf_api2_2_023" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" /> |
14 </package> | 14 </package> |
15 <package name="mirdeep2_quantifier" version="2.0"> | 15 <package name="mirdeep2_quantifier" version="2.0"> |
16 <install version="1.0"> | 16 <install version="1.0"> |
17 <actions> | 17 <actions> |
18 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2-quantifier.tar.gz</action> | 18 <action type="download_by_url">https://raw.githubusercontent.com/bgruening/download_store/master/miRDeep2/miRDeep2-quantifier.tar.gz</action> |
19 <action type="move_file"> | 19 <action type="move_file"> |
20 <source>quantifier.pl</source> | 20 <source>quantifier.pl</source> |
21 <destination>$INSTALL_DIR</destination> | 21 <destination>$INSTALL_DIR</destination> |
22 </action> | 22 </action> |
23 <action type="move_file"> | 23 <action type="move_file"> |
24 <source>make_html2.pl</source> | 24 <source>make_html2.pl</source> |
25 <destination>$INSTALL_DIR</destination> | 25 <destination>$INSTALL_DIR</destination> |
26 </action> | 26 </action> |
27 <action type="move_file"> | 27 <action type="move_file"> |
28 <source>convert_bowtie_output.pl</source> | 28 <source>convert_bowtie_output.pl</source> |
29 <destination>$INSTALL_DIR</destination> | 29 <destination>$INSTALL_DIR</destination> |
30 </action> | 30 </action> |
31 <action type="set_environment"> | 31 <action type="set_environment"> |
32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> | 32 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> |
33 </action> | 33 </action> |
34 </actions> | 34 </actions> |
35 </install> | 35 </install> |
36 <readme> | 36 <readme> |
37 | 37 |